mRNA_A-nodosum_M_contig9144.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9144.4.1
Unique NamemRNA_A-nodosum_M_contig9144.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.420e-44
Identity = 76/126 (60.32%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:   10 TDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAPEILFTPRMWNNSGASKGLPEVVVDALSSM 387
            TD+RRLE +R++KEE CYVPLDF +E EE+G+F++K MR+CKGA+ SP LS YE+C++  F++ETD+D  V +TKTF LKSG EL V +GRERFHAPEILFTP +WN  G S+ L + V+DAL+ +
Sbjct: 1485 TDRRRLEYTREMKEEQCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSGYEACDSRDFIDETDKDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFTPGLWNEGGVSRSLSQAVLDALAEL 1610
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.710e-42
Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:   10 TDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAPEILFT----PRMWNNSGASKGLPEVVVDALSSM 387
            TD+RRLE +R++KEE CYVPLDF +E EE+G+F++K MR+CKGA+ SP LS YE+C++  F+++TD D  V +TKTF LKSG EL V +GRERFHAPEILFT    P +WN  G S+ L +VV+DAL+ +
Sbjct:  860 TDRRRLEYTREMKEEHCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSGYEACDSRDFIDDTDTDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFTASHHPGLWNEGGVSRSLSQVVLDALAEL 989
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BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Match: W7TNT9_9STRA (Actin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-6
Identity = 38/136 (27.94%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   13 DKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLSPKLSQYESCETDKFLE-----ETDEDAGVKRTKTFQ------LKSGDELLVTLGRERFHAPEILFTPRMWNNSGASKGLPEVVVDALSSM 387
            +++ LE++R +KE   YV  DFN E   +G+F ++ + + K  R    ++  ES    + L+     E D  +   R           LK+G+EL++++G ERFH  E+ F P+++ + G +  + ++V+ +L+S+
Sbjct: 1117 ERKMLEVARLIKESHAYVAADFNCERGRYGTFEREKIDVMKFHRAQ--IATEESVVPGRRLDMASVREPDGKSNTSRDGRGSVEVRQPLKNGEELVLSVGCERFHCGELFFRPKLFPDIGQTTSVIDLVMKSLASV 1250
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9144.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHM1_ECTSI1.420e-4460.32TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDL2_9PHAE2.710e-4258.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TNT9_9STRA1.010e-627.94Actin-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9144contigA-nodosum_M_contig9144:6690..7440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHM1
PFAMsActin,BRCT,Filamin,Ist1,PARP,PARP_reg,VIT,VWA_3
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.33e-45
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
EC2.4.2.30
DescriptionATP binding
Cds size387
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870370.4658294-CDS-A-nodosum_M_contig9144:6689..67611680870370.4658294-CDS-A-nodosum_M_contig9144:6689..6761Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 6690..6761 -
1680870370.483416-CDS-A-nodosum_M_contig9144:6947..70741680870370.483416-CDS-A-nodosum_M_contig9144:6947..7074Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 6948..7074 -
1680870370.4947445-CDS-A-nodosum_M_contig9144:7252..74401680870370.4947445-CDS-A-nodosum_M_contig9144:7252..7440Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 7253..7440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9144.4.1prot_A-nodosum_M_contig9144.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9144 6690..7440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9144.4.1

>prot_A-nodosum_M_contig9144.4.1 ID=prot_A-nodosum_M_contig9144.4.1|Name=mRNA_A-nodosum_M_contig9144.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
MIKTDKRRLEMSRKLKEELCYVPLDFNVEAEEHGSFRQKVMRICKGARLS
PKLSQYESCETDKFLEETDEDAGVKRTKTFQLKSGDELLVTLGRERFHAP
EILFTPRMWNNSGASKGLPEVVVDALSSM
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mRNA from alignment at A-nodosum_M_contig9144:6690..7440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9144.4.1 ID=mRNA_A-nodosum_M_contig9144.4.1|Name=mRNA_A-nodosum_M_contig9144.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:6690..7440- (Ascophyllum nodosum dioecious)
ATGATCAAGACGGACAAGCGACGACTGGAGATGTCGAGAAAGCTCAAGGA
AGAACTGTGCTACGTGCCCTTGGACTTCAATGTCGAGGCGGAAGAGCACG
GCTCGTTCCGCCAAAAAGTCATGCGTATCTGCAAGGGGGCTCGGCTATCG
CCCAAGCTGTCCCAGTACGAATCTTGCGAAACGGACAAGTGAGCACTTAC
TTTCCAAGCTACCACCTCATATTATATAATATTATAGAGAGCTCTGTTAC
TAATGCCAACAGAGCATTCTGATGGCTCTTAAGTTCTCATGTTCATGTGT
GAGGTTCCCTCCCGCGTTCCCTGAATGGTCCTCTACCACCCTTGCTTCTT
CACGCCGACACGACAGGTTCTTAGAAGAGACCGACGAGGATGCGGGGGTG
AAGAGGACCAAAACCTTTCAGCTTAAGTCGGGAGACGAGCTGTTGGTGAC
TCTAGGAAGGGAAAGATTCCACGCTCCGGAGATATTGTTTACGGTAAGGT
GAACGGCGAATCAGTTCCTTGGTACTCAATAAATGTGCTCGTACTTCTTC
GCACATGTTTCATTTTGCTGTGTACCGAGTAGAGCACATGGAGTCGACTG
GGAAACGGACAACATGTCACCATGCTTGCTTTTTTCCCCTGTTGCTTTCC
GCCACTACTGTACGACGACGCGGTTGCAGCCGCGCATGTGGAACAACTCG
GGAGCATCGAAGGGACTACCAGAAGTGGTGGTGGACGCTCTCTCCAGCAT
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9144:6690..7440-

>mRNA_A-nodosum_M_contig9144.4.1 ID=mRNA_A-nodosum_M_contig9144.4.1|Name=mRNA_A-nodosum_M_contig9144.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:6690..7440- (Ascophyllum nodosum dioecious)
ATGATCAAGACGGACAAGCGACGACTGGAGATGTCGAGAAAGCTCAAGGA
AGAACTGTGCTACGTGCCCTTGGACTTCAATGTCGAGGCGGAAGAGCACG
GCTCGTTCCGCCAAAAAGTCATGCGTATCTGCAAGGGGGCTCGGCTATCG
CCCAAGCTGTCCCAGTACGAATCTTGCGAAACGGACAAGTTCTTAGAAGA
GACCGACGAGGATGCGGGGGTGAAGAGGACCAAAACCTTTCAGCTTAAGT
CGGGAGACGAGCTGTTGGTGACTCTAGGAAGGGAAAGATTCCACGCTCCG
GAGATATTGTTTACGCCGCGCATGTGGAACAACTCGGGAGCATCGAAGGG
ACTACCAGAAGTGGTGGTGGACGCTCTCTCCAGCATG
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