mRNA_A-nodosum_M_contig9090.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9090.1.1
Unique NamemRNA_A-nodosum_M_contig9090.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9090.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.100e-33
Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 1
Query:    1 VGTLNVNGVRSKQVDLRYLLENRRIGCLALQETLLRAADWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYQVGRSSPWSIFVRCTGTQLAQPWIVASVYVPSGKSEGATPMKKIQEQVKALREEFSDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHI 555
            V TLN+NGV+SK++ L+ +L   RI C+ALQET L   DW LN+PGY  +A  GERT+STRG A+LL        VG+SSPW  FVRC G                    G  P++ ++ Q++ LR ++ +D++ +MGD+NR R +V ++         V E + G   D       S R IDHI
Sbjct:   35 VATLNINGVKSKKIQLQRVLAMYRINCIALQETTLTVTDWALNVPGYRTFAVYGERTSSTRGAAILLRNKMGAQTVGKSSPWHTFVRCYGL-------------------GKVPLRTVRNQMRDLRVKYPNDSIILMGDFNRLRPRVEQWFNCAYESIRVWE-LTGKDADLGTRDHGSKRVIDHI 199          
BLAST of mRNA_A-nodosum_M_contig9090.1.1 vs. uniprot
Match: A0A401H027_9APHY (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H027_9APHY)

HSP 1 Score: 83.2 bits (204), Expect = 3.460e-15
Identity = 59/189 (31.22%), Postives = 97/189 (51.32%), Query Frame = 1
Query:    7 TLNVNGVRSKQVDLRYLLENRRIGCLALQETLLRAADWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYQVGRSSPWSIFVRCTG-TQLAQPWIVASVYVPSGKSEGATPMKKIQEQV---KALREEFSDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAV 561
            TLN+NG +SK ++L  LL   +I   A+QETL+      L +PGY  YA+    T   RG A+L+ +S S Y V +     I V+ +G T+ + P  V ++Y+PSG +      K+I+E +   K +        + I+GDWN +  Q+ + +       +VL+    G   +R     + +++DHI V
Sbjct:  180 TLNLNGFKSKAIELEQLLCKEKIKVCAIQETLVTDRAHQLRVPGYTTYAQ--NWTTGFRGQAVLVHQSLSSYLVEQKEGHYIHVKISGLTRNSVPVHVIAIYLPSGGNFVRERRKRIREILAINKRVLTHTPGAPIIILGDWNMSAAQIGQEINPPITGLQVLQ--TRGSPLSRFPVNGAPKSLDHIVV 364          
BLAST of mRNA_A-nodosum_M_contig9090.1.1 vs. uniprot
Match: A0A167TY33_9AGAM (DNase I-like protein (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A167TY33_9AGAM)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-7
Identity = 53/189 (28.04%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   13 NVNGVRSKQVDLRYLLENRRIGCLALQETLLRAADWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYQV--GRSSPWSIFVRCTGTQLAQ-PWIVASVYVPSGKS---EGATPMKKIQEQVKALREEFSDDAMAIMGDWNRTRCQVARFVRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAV 561
            NVNG RSK++ +  ++   ++  LALQETL+    + + I GY+ YA    +    RG ALL+    S Y++    S  W I V+ +G    Q P  V + Y+PSG +   E       +  + + + ++     + +MGD NR    V + +R     + +      G   TR   R    ++DH+ V
Sbjct:  180 NVNGFRSKKIQVEDMVHREKVAVLALQETLVEQKQYPVIIDGYNTYAV--PKQEGFRGQALLVDNDLSSYELPHDESKHW-IHVKVSGLLGVQGPVNVFAGYLPSGGAYAGERTRLFNYLLLRCENILKKEPGALILVMGDLNRRSGPVDKALRK---RYALTRYDPTGSDFTRWPLRGKPSSLDHMLV 362          
BLAST of mRNA_A-nodosum_M_contig9090.1.1 vs. uniprot
Match: A0A0D0DHR2_9AGAM (Uncharacterized protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0DHR2_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 9.430e-6
Identity = 56/198 (28.28%), Postives = 88/198 (44.44%), Query Frame = 1
Query:    1 VGTLNVNGVRSKQVDLRYLLENRRIGCLALQETLLRAADWNLNIPGYHCYARCGERTASTRGVALLLSKSESGYQVGRSSPW-SIFVRCTGTQL------AQPWIVASVYVPSG---KSEGATPMKKIQEQVKALREEFSDDAMAIMGDWNRTRCQVARFVRAV-DPEFEVLEPVAGGRVDTRGTRRRSDRT--IDHI 555
            V T N+NG  SK+  +   L  + +   ALQETL+ A  + + + GY  +A         RG A+L+  S   Y V  +      + R    ++       +P  V +VY+PSG   +S        +Q  V  ++   SD  + I+GD+N T   V ++   + D   + L PV  G   TR   R   R+  IDH+
Sbjct:  186 VATWNINGFPSKKHQVIDFLHEQSVAICALQETLVSATQYPIQVSGYVTFAL--PWVEGFRGWAILVDSSLPAYLVHHADDQLEGYRRLLHVKVNNFLPDKKPLHVLAVYLPSGGNFRSARKQCYSVVQSVVDGIKRRESDAHVLILGDFNDTDVSVDKWNATLFDRGLKRLRPV--GSPLTRFPVREQSRSAAIDHM 379          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.100e-3339.46Reverse transcriptase domain-containing protein n=... [more]
A0A401H027_9APHY3.460e-1531.22LINE-1 retrotransposable element ORF2 protein n=1 ... [more]
A0A167TY33_9AGAM2.820e-728.04DNase I-like protein (Fragment) n=1 Tax=Fibularhiz... [more]
A0A0D0DHR2_9AGAM9.430e-628.28Uncharacterized protein n=1 Tax=Paxillus rubicundu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9090contigA-nodosum_M_contig9090:6000..6560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5297.GMQ_19178T0
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size561
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.05e-10
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size561
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870357.6822736-CDS-A-nodosum_M_contig9090:5999..65601680870357.6822736-CDS-A-nodosum_M_contig9090:5999..6560Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9090 6000..6560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9090.1.1prot_A-nodosum_M_contig9090.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9090 6000..6560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9090.1.1

>prot_A-nodosum_M_contig9090.1.1 ID=prot_A-nodosum_M_contig9090.1.1|Name=mRNA_A-nodosum_M_contig9090.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=187bp
VGTLNVNGVRSKQVDLRYLLENRRIGCLALQETLLRAADWNLNIPGYHCY
ARCGERTASTRGVALLLSKSESGYQVGRSSPWSIFVRCTGTQLAQPWIVA
SVYVPSGKSEGATPMKKIQEQVKALREEFSDDAMAIMGDWNRTRCQVARF
VRAVDPEFEVLEPVAGGRVDTRGTRRRSDRTIDHIAV
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mRNA from alignment at A-nodosum_M_contig9090:6000..6560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9090.1.1 ID=mRNA_A-nodosum_M_contig9090.1.1|Name=mRNA_A-nodosum_M_contig9090.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at A-nodosum_M_contig9090:6000..6560+ (Ascophyllum nodosum dioecious)
GTGGGTACTCTAAACGTCAATGGAGTGCGGAGTAAACAAGTCGACCTCCG CTATCTACTGGAGAACAGACGAATTGGGTGCCTGGCGCTACAAGAGACAT TATTGCGTGCAGCGGACTGGAACCTCAACATCCCCGGCTATCATTGCTAT GCGAGATGCGGGGAGCGGACTGCCTCTACCAGAGGGGTAGCTCTGCTTCT TAGCAAATCCGAGAGTGGATACCAGGTGGGCCGTAGCTCACCGTGGTCGA TATTCGTGCGATGTACGGGGACCCAACTAGCCCAACCCTGGATAGTGGCA AGTGTGTATGTACCTTCTGGCAAATCCGAGGGGGCAACCCCGATGAAGAA AATACAGGAACAAGTAAAAGCGTTGAGGGAGGAATTTTCCGATGACGCAA TGGCCATCATGGGCGACTGGAACCGTACTCGTTGTCAGGTTGCGAGGTTT GTGCGGGCCGTCGACCCGGAGTTCGAGGTATTGGAACCGGTGGCAGGGGG AAGGGTCGACACCCGTGGGACTCGACGGCGTTCTGACCGCACGATCGATC ATATTGCAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9090:6000..6560+

>mRNA_A-nodosum_M_contig9090.1.1 ID=mRNA_A-nodosum_M_contig9090.1.1|Name=mRNA_A-nodosum_M_contig9090.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=561bp|location=Sequence derived from alignment at A-nodosum_M_contig9090:6000..6560+ (Ascophyllum nodosum dioecious)
GTGGGTACTCTAAACGTCAATGGAGTGCGGAGTAAACAAGTCGACCTCCG
CTATCTACTGGAGAACAGACGAATTGGGTGCCTGGCGCTACAAGAGACAT
TATTGCGTGCAGCGGACTGGAACCTCAACATCCCCGGCTATCATTGCTAT
GCGAGATGCGGGGAGCGGACTGCCTCTACCAGAGGGGTAGCTCTGCTTCT
TAGCAAATCCGAGAGTGGATACCAGGTGGGCCGTAGCTCACCGTGGTCGA
TATTCGTGCGATGTACGGGGACCCAACTAGCCCAACCCTGGATAGTGGCA
AGTGTGTATGTACCTTCTGGCAAATCCGAGGGGGCAACCCCGATGAAGAA
AATACAGGAACAAGTAAAAGCGTTGAGGGAGGAATTTTCCGATGACGCAA
TGGCCATCATGGGCGACTGGAACCGTACTCGTTGTCAGGTTGCGAGGTTT
GTGCGGGCCGTCGACCCGGAGTTCGAGGTATTGGAACCGGTGGCAGGGGG
AAGGGTCGACACCCGTGGGACTCGACGGCGTTCTGACCGCACGATCGATC
ATATTGCAGTG
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