mRNA_A-nodosum_M_contig906.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig906.1.1
Unique NamemRNA_A-nodosum_M_contig906.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7G7F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.050e-10
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  376 SCQETATTCSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG 558
            S Q    TC  GI+GI+++ +CC +SCG+CGG GC++  GG E CC   +  SG  C   G
Sbjct:   56 SLQAEVETCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVYG 116
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.250e-9
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  400 CSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELC 546
            C+NG+ GIE +GVCC  SCG CGG+GCS    G   CCT +I + GE+C
Sbjct:  201 CTNGVSGIESDGVCCEISCGQCGGSGCSMRGNGAASCCTSTILEVGEVC 249
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.100e-8
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  400 CSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG 558
            C  GI+GI+++ +CC +SCG+CGG GC++  GG E CC   +  SG  C  +G
Sbjct:  145 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTG 197
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.360e-8
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  397 TCSNGIIGIEENGV-CCPTSCGTCGGAGCSTFTG----GPEDCCTRSIWQSGELCDES 555
            TCSNG+ GI+ NGV CCP  CG CGGAGC+T       G + CC  SI  S E CDE+
Sbjct:  346 TCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDET 403
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.920e-8
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  400 CSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG 558
            C  GI+GI+++ +CC +SCG+CGG GC++  GG E CC   +  SG  C  +G
Sbjct:   25 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTG 77
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BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.270e-7
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  397 TCSNGIIGIEENGV-CCPTSCGTCGGAGCSTFTG----GPEDCCTRSIWQSGELCDESG 558
            TC+NGI GI+ NGV CCP  CG C G GC+ F      G + CC  +I  SG LC E+G
Sbjct:   24 TCTNGIEGIDGNGVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETG 82
[Close]
BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.750e-7
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:  400 CSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG 558
            C  GI+GI+ + VCC TSCG+CGG GCS   GG   CC   +  SG  C  +G
Sbjct:  270 CDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTG 322
[Close]
BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-7
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:  400 CSNGIIGIEENGVCCPTSCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG 558
            C  GI+GI+ + VCC +SCG+CGG+GC+   GG + CC   +  SG  C  +G
Sbjct:  136 CDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTG 188
[Close]
BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-6
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  388 TATTCSNGIIGIEENG-VCCPTSCGTCGGAGCSTFTG-----GPEDCCTRSIWQSGELCDES 555
            + TTCSNG+ GI+ NG VCCP  C  CGG+GC T  G     G E CC   +  SG  CD++
Sbjct:  523 SVTTCSNGVQGIDGNGIVCCPMECNQCGGSGC-THAGRAAGLGAESCCGSGVKASGRYCDDT 583
[Close]
BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-6
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:  388 TATTCSNGIIGIEENGV-CCPTSCGTCGGAGCSTFTG----GPEDCCTRSIWQSGELCDES 555
            T  TCSNG+ GI+ NGV CCP  C  CGG GC+T       G E CC   I  SG  CD++
Sbjct:  541 TVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDT 601
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig906.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G7F0_ECTSI7.050e-1044.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTS2_ECTSI4.250e-955.10Similar to Gram-negative bacteria-binding protein ... [more]
D7G5D5_ECTSI5.100e-845.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC43_9PHAE5.360e-855.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3T6_ECTSI5.920e-845.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN1_ECTSI1.270e-750.85Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G3U7_ECTSI3.750e-749.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE5.580e-745.28AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUJ9_ECTSI1.700e-648.39Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7FQV4_ECTSI1.710e-649.18Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig906contigA-nodosum_M_contig906:164640..168278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY01
PFAMsLRRNT,LRR_8
Model size559
Max annot lvl2759|Eukaryota
KEGG koko:K13023
Hectar predicted targeting categoryother localisation
Exons7
Evalue6.38e-12
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size558
COG categoryU
BRITEko00000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig906.1.1prot_A-nodosum_M_contig906.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig906 164640..168278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.3148253-CDS-A-nodosum_M_contig906:164639..1646951680870355.3148253-CDS-A-nodosum_M_contig906:164639..164695Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 164640..164695 +
1680870355.3268003-CDS-A-nodosum_M_contig906:165341..1654161680870355.3268003-CDS-A-nodosum_M_contig906:165341..165416Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 165342..165416 +
1680870355.339014-CDS-A-nodosum_M_contig906:166094..1661661680870355.339014-CDS-A-nodosum_M_contig906:166094..166166Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 166095..166166 +
1680870355.3591633-CDS-A-nodosum_M_contig906:166460..1665321680870355.3591633-CDS-A-nodosum_M_contig906:166460..166532Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 166461..166532 +
1680870355.369846-CDS-A-nodosum_M_contig906:167043..1670941680870355.369846-CDS-A-nodosum_M_contig906:167043..167094Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 167044..167094 +
1680870355.3866384-CDS-A-nodosum_M_contig906:167791..1678561680870355.3866384-CDS-A-nodosum_M_contig906:167791..167856Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 167792..167856 +
1680870355.4018602-CDS-A-nodosum_M_contig906:168111..1682781680870355.4018602-CDS-A-nodosum_M_contig906:168111..168278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig906 168112..168278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig906.1.1

>prot_A-nodosum_M_contig906.1.1 ID=prot_A-nodosum_M_contig906.1.1|Name=mRNA_A-nodosum_M_contig906.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MLTELPDGVFSDLEEMQVLSLVNNKLTELKQDVFYGFADEIVSLRLSDNN
LSELPAGLFSASGSLKYLSLDGNNLMSLPANIFSPLTGLFELDLRGNENL
QCVPTVPESIPPTIIYLPENYDETASCQETATTCSNGIIGIEENGVCCPT
SCGTCGGAGCSTFTGGPEDCCTRSIWQSGELCDESG
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mRNA from alignment at A-nodosum_M_contig906:164640..168278+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig906.1.1 ID=mRNA_A-nodosum_M_contig906.1.1|Name=mRNA_A-nodosum_M_contig906.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3639bp|location=Sequence derived from alignment at A-nodosum_M_contig906:164640..168278+ (Ascophyllum nodosum dioecious)
ATGCTCACGGAGCTACCTGACGGCGTTTTCTCTGACCTCGAAGAAATGCA
AGTCTTGTGAGTGACTGGAAAAGCCTCTAAAACAGAATCCATCCGATAGT
AGAAGTGTTAACTAAATGTGCGATCAGATCGTATCACTTGTGGAAGGAAG
CATCAAGATCGTTAGCTATCTAGCTGTACACTCGAGGGTTTCATCACATC
AGTGGTGTCGAATGACCCGTCGTTCGGTTGATGTTTACAAGGAAGAAAGG
CATGAGCTGATTGATGGCGGGCGTTGAAACGAGGAAAGATCCACTGGGAT
AGCATGTGTATGTCGTATGACGTCCCTGAATTAATCGATCACCGTACGTC
ACTCGATGGACAGCGTACGTCTTGTCCTCGTTGCCACGATTGAATCAAAA
TATGATTTTTGCGGGGGCAATCGCACATCGGTCGATGGCGCCAAGTAATA
CTCTAGCTTACTAGTGCCAACCCCGAATCTGTCCGGTCCTATAGAAACAT
TTCTTGTCTATCGCGGGTTCACGCCTGCACATTTTTATCGCGAATACAAG
TTGAACCTTTTTACTCTATTCAATCACTAGTTCAAGTTAGCCTTACTATC
GTTCTTTCAAGAAGTCGTTGAACCACCGAGGTGCGGTGGCAGCGAAGTAT
CGCGCGTGTTTTTGCTGCCGAGATAATCAAGCGTTCGTTGGCGTCAAACC
AGGAGTCTTGTAAACAACAAGCTGACCGAGCTGAAGCAGGACGTCTTCTA
CGGCTTTGCGGATGAGATTGTTTCCTTGTGAGTTTTTCCGATCGAGCAGC
GTCGCGTTCAAGCTGTTGGGCTAGGTTGCATTCAGTTGAAGAAATGAAAT
TGGAGTGAACTACCGTTCAATTGGAATAAAATGGCGTTTGAATGAGTTCA
AAATAATCCTTAATGCAGAAGCTCACCTAACTCTCCATCCGGTGAACAGT
ACGAGTTTTTGTGGTTCTCAAAATCCTGGTCATACGCCGTGCCTGTTTCT
CCCCCTTGGGGTAGTCCTGTAGAGCGAATTCTAAGCCGACTGAGAGCCTG
GTACCAAGGTTAATCTCATTATAACGGGACTTAAACCTACGACTTCAAGG
CCTTGCCGGCGACACCTTTTTTACAGTTGTTATTTATTGTGACTCGCGGT
AAAACCCTTCGTACAGGCGCGCGATGCAGCATAGGCGTAACCGATGTTAT
CCAACCACATCGAATGTTGCAGGGTAGAGCAATATTGGTCGTTTGAACAA
GGCTCCTGCTGGTCTAAGGTGCCTGGTGTTCTATCTTTATCCTGAACACT
GCACGGGATGCAAAAATGTATGAGGTACAACCAATATTTCTTCTTGTGAA
GTAAGCAGCAACCGATCTCGGCACAATGAACATCAGTTCGCCTTTCGGCG
GAGCTTCTGTTCTACCCATATTCCCTTTCCGCCCTCTTTCCATCACAACG
AGCAGGCGTCTGTCAGATAATAACTTGTCCGAATTACCGGCGGGCTTGTT
TTCGGCCTCGGGGAGCTTGAAGTATCTGTGAGTCTCGGTACGTTTGATGA
CTTTTTCGTTATGTTCCAGCGCCAAGGTTTTAGACGTCTACATAATAATA
TCTCTACAGCTTCATCGGTAAGGTACCTATTTGTCGTATTCCAGAGGTTA
CTTCCCAACCTCGCGATGTTCTCTTTTTTCGCGGCTGCGGGTGGACTACG
GCAGGAACAGGCGACCCAATGTATCTCGCGGTAAATATCTGGAGCATGCT
TAACGACATTTTGTTTGCTAGTTGCCCAAGCTGCCAATTTATTCTCCGTG
CATTTTGTTTTCGGATCTCAGGTCGCTCGACGGAAACAATCTGATGAGTC
TCCCTGCGAATATATTCTCGCCCTTGACCGGACTCTTTGAACTGTGAGTG
ACAAATGTAATGAAAAGGTGGCACGTTAGTGACGTGAGGCTTCGCACTTT
GGTTCACAGGAGGACCTGGACCATGTGCCCACCACCCCGGTCAAGGTTAT
GCTACTGAATTATAAGTACTAGTATTTCCTAAATATAAATGTGATATTAC
CCAGTAAACTCTCGGCGGTGAACGCCATCGGTACTCAATGGTTGGACCTG
ATAAACACGGGACTGACCCTGTGGCGAATGACGGTATAAATGAACGCAGT
CGCGGAAAGCGGGAGGACTCTTGTGAGTAAGCACCATATTCAGCCTGAGG
GCGGACCATGAACGGGCTAACGCGGGACGAGACGGCTGAACCCGTTTCGC
GAGACCAAAATCCCAGACGCGAACAGGGATAAGGAGAAAAACATTTCCCC
TGCTCAGCTCACCACGGGTAGGATTGGCAACCATACGCGATTGATCCATA
CCCGGCTGAGCTTGCTGACTGTGCATGCAAACATACTGCCCATCTGCTGT
ACAGGGATTTGAGGGGCAACGAAAATCTTCAATGCGTTCCAACCGTTCCA
GAATCGTGAGTGCAGAGCAGCCGGGGCCAGAAAACACCAGAGAGATGTCG
GTCACCACAGCGGAATATCGTTTATGTTGCGAATATTGCGATTGGTAGGC
TTGGATGCTACACTACTCCTTGTAGCATGCGTGCTGGACGAATGACGAAA
TGTGAACGTATAGATCGATTCTATTCTCTTGCGAAGGACGAAGTACTTGA
ATAATGATTCATATCTGCACTTCTTTGTCTAATATTAAGATTGTTTGAAG
TTTGAAGCTCCAGTGTTCTTGAAAAAGGTCAAATTTAGTCGATCACCAAA
CAACCTTAAGAAGGAGAAGATGTCCTTAAGGCGTAGGGAGAAAACGCAAT
CGTGATTGATTGATGCTCTTGGCAGCAGTACGCTTTCTTCCGTCACTTCC
CTCAGGGCCTTGCCTTGATATGCCGTGGAATAGTATATATATATATGCCT
CGTCAGGAAATCCATAGTTCGTAACGTCAAAAAGAGAGAGCGTTTCGAAA
TGTCTCGTTGTGGCCATTCGGAAAACGAAGCTATTAAGACATATTTTAAT
TGTTTCCTACTCACTGGTCAAGAAACTTAGAGGGAGAGATAATTGTCTAC
CCCCATGTATGAACTATTGTCTTCGACGGTGACCGTGATGCACGCCATTC
CCTCTGCATTTCTCCTTGTCAAATAATATTTCTGCTGCTGTGATTGCTAC
AGAATTCCTCCAACTATTATCTATCTCCCTGAAAACTACGACGAAACAGC
CAGCTGCCAGGAGACAGGCGAGGCAAAAACTACCGGTTGCAAAATTTGCC
TCGTGGAAGTTCGTTCTTTCGAAGGGGGAAGGCAGGCATCTATATGGCGT
AATAGCTTTCGTTTACCACTCTAATGAAATTGACAAGGAGGAAATCAGCG
AATCCCGTTTGTCATCGGCTGGCGAACGCTGCCCTGAGGTGGACATTTTC
TCGATGAACTCGTTCTTCATATACATTTCTGATTGTGACTTATTTGATGT
TTGGTTGCGCTCTAAGCCACAGCAACCACATGCAGCAACGGAATCATCGG
AATCGAAGAGAACGGTGTATGCTGCCCGACGTCGTGCGGCACATGTGGCG
GAGCCGGCTGCTCAACGTTCACTGGCGGCCCAGAGGACTGCTGCACCCGA
TCAATCTGGCAGAGCGGTGAATTGTGCGATGAGTCTGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig906:164640..168278+

>mRNA_A-nodosum_M_contig906.1.1 ID=mRNA_A-nodosum_M_contig906.1.1|Name=mRNA_A-nodosum_M_contig906.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig906:164640..168278+ (Ascophyllum nodosum dioecious)
ATGCTCACGGAGCTACCTGACGGCGTTTTCTCTGACCTCGAAGAAATGCA
AGTCTTGAGTCTTGTAAACAACAAGCTGACCGAGCTGAAGCAGGACGTCT
TCTACGGCTTTGCGGATGAGATTGTTTCCTTGCGTCTGTCAGATAATAAC
TTGTCCGAATTACCGGCGGGCTTGTTTTCGGCCTCGGGGAGCTTGAAGTA
TCTGTCGCTCGACGGAAACAATCTGATGAGTCTCCCTGCGAATATATTCT
CGCCCTTGACCGGACTCTTTGAACTGGATTTGAGGGGCAACGAAAATCTT
CAATGCGTTCCAACCGTTCCAGAATCAATTCCTCCAACTATTATCTATCT
CCCTGAAAACTACGACGAAACAGCCAGCTGCCAGGAGACAGCAACCACAT
GCAGCAACGGAATCATCGGAATCGAAGAGAACGGTGTATGCTGCCCGACG
TCGTGCGGCACATGTGGCGGAGCCGGCTGCTCAACGTTCACTGGCGGCCC
AGAGGACTGCTGCACCCGATCAATCTGGCAGAGCGGTGAATTGTGCGATG
AGTCTGGA
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