mRNA_A-nodosum_M_contig905.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig905.4.1
Unique NamemRNA_A-nodosum_M_contig905.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig905.4.1 vs. uniprot
Match: A0A6H5L0C1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.190e-38
Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:   10 LTSPGPXXXXXXXXA---QDPLRQGAKAE-DKRPIWPYLKAAKQQFFNVVLASLAITMAVKMVEGKGTRVALEEQIDELERREGVLLSALTDEEWAEGVLKKLGITGGKGGKEALLRELNEVVRTSMLDKESARLETMRSAAVNAS 435
            L+SP P        A   Q  L +G KAE ++R +WPYLKAA+QQFFNV+LA+L+I MAVKMVEGKG RVALEE++ EL+R++GVLL +L+DE WAE V K++G  GGK   EA++ E+ +VV  S+LDKE+A LE MR+AA+  S
Sbjct:   43 LSSPAPTGAPSPTAAAKGQSQLHRGKKAEGEERRLWPYLKAARQQFFNVILATLSIVMAVKMVEGKGARVALEEEMVELQRQQGVLLRSLSDEAWAEDVAKRIGAAGGK---EAVMVEIEKVVAASLLDKETAELEAMRAAALKTS 185
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig905.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0C1_9PHAE2.190e-3856.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig905contigA-nodosum_M_contig905:76335..83637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size858
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_001020.1
Cds size363
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig905.4.1prot_A-nodosum_M_contig905.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig905 76662..83469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870353.9761088-UTR-A-nodosum_M_contig905:76334..766611680870353.9761088-UTR-A-nodosum_M_contig905:76334..76661Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 76335..76661 -
1680870354.0483615-UTR-A-nodosum_M_contig905:83469..836371680870354.0483615-UTR-A-nodosum_M_contig905:83469..83637Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 83470..83637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870353.9871025-CDS-A-nodosum_M_contig905:76661..766811680870353.9871025-CDS-A-nodosum_M_contig905:76661..76681Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 76662..76681 -
1680870354.0013335-CDS-A-nodosum_M_contig905:76914..770641680870354.0013335-CDS-A-nodosum_M_contig905:76914..77064Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 76915..77064 -
1680870354.013547-CDS-A-nodosum_M_contig905:77407..774801680870354.013547-CDS-A-nodosum_M_contig905:77407..77480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 77408..77480 -
1680870354.0273397-CDS-A-nodosum_M_contig905:82745..828381680870354.0273397-CDS-A-nodosum_M_contig905:82745..82838Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 82746..82838 -
1680870354.0375803-CDS-A-nodosum_M_contig905:83442..834691680870354.0375803-CDS-A-nodosum_M_contig905:83442..83469Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 83443..83469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig905.4.1

>prot_A-nodosum_M_contig905.4.1 ID=prot_A-nodosum_M_contig905.4.1|Name=mRNA_A-nodosum_M_contig905.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MAVKMVEGKGTRVALEEQIDELERREGVLLSALTDEEWAEGVLKKLGITG
GKGGKEALLRELNEVVRTSMLDKESARLETMRSAAVNASGDSSRQASKSD
SRGSGNAPPKSATPASKGML*
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mRNA from alignment at A-nodosum_M_contig905:76335..83637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig905.4.1 ID=mRNA_A-nodosum_M_contig905.4.1|Name=mRNA_A-nodosum_M_contig905.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7303bp|location=Sequence derived from alignment at A-nodosum_M_contig905:76335..83637- (Ascophyllum nodosum dioecious)
GCTTCAGGGTTGACTTCCCCCGGACCACCGCCGCCGCCGCCGCCGCCGCC
GGCTCAGGATCCACTACGTCAAGGAGCGAAGGCGGAAGACAAGAGGCCGA
TATGGCCGTACCTCAAGGCCGCGAAACAGCAGTTCTTTAACGTTGTCCTC
GCCTCGTTGGCGATCACCATGGCCGTCAAGATGGTCGAGGGAAAGGCGAG
GTTCATGCGGGGTACCTCGGAAAGATTATTAAGCTCCTGTAGTAGTTTTA
GTTGAAGCACAAAATCTGTTTGGCACTGTCCTGCATGCTTGTCATATAAC
TGTACAGTGCCGTATAGAGTACCGATTCTATGCACGCATCGAAATGCTTT
TACAGTAGTTTGTACCACGGGTAACTACGAAGCGCCAGTAGATGATATCC
GCCGTGCGGGAAGACGATTCCGATGGTGACATTCCCGTGTCCATGCTATT
GCCTTGAATAACCCAAAGAGGCGTTATTGAAGGCCCTGGCACCTTTCCTT
CGAAATTGATCCGAGAGCGCTTGAAGAGCATGACAGCGTACACCGTATTG
TATAACAGCATACTTAACAGGATATACTTGCTTCGTCCCTGGGCATGTTT
CGTCTCTAGACATTTTCAGGTACAGTATCGGTAAATAATATGTTAGGTCA
ATGCCACAGTAGGTGAGAACATTTTTCGTGGTCTTAGGTGGGGCCGGGTT
TGGTGGCGTTTCGAGGCCGGAAAGTCACTGTATAACTTGTCACGCTTCTG
AGCAACGTCCTGACGACCGTCCCGATAAACCTTGGTCGTCCGATGGCAGG
GAACCAGGGTCGCGCTCGAAGAGCAAATCGACGAGCTGGAGCGACGAGAA
GGGGTTTTGTTGAGCGCGCTGACCGATGAGGAATGGGCGGAGGTACTGTT
TATACCAACCTTAACCTTTATAAGTAAAAAGCGACGCGCAATCCTCGATG
CCTCGACTTTTCCTACAAGCGATCGTCCATCCAATGGTAACTTAGGCTGA
TCTCGTAGAGGTTAAGAGCACCTCTCTCAGTCTTGAGACGACGACCGAGG
ACCTCGTAGAATCGGTTTGCTCTCCTTCGGCGCGTTTCAGTTGTGGCAGT
AAGAGAGCTCTTCATACTATTAATAATACTAACTGTGGTACGGTGGTGCT
GGTAGGAGTATCGTCACAACATACGCTGATGTTTGTTTTCTGCTGTTGTA
CGGTAGTGCTTTGGAAGCATTACGCCGTGCAAGGCCGTCAGTTCTAACTA
TTTAATATTTAATATTTTAGATCAATAGCAGTCCTGAAGGGGAACCAGAG
GTACAGACTCGTGCTTCGAGGGTCGTTTGCGATGGTCCGAAGCCCAGAGT
TTGCAGCAGAACTCTGCGCCCCCCTCCCAAAGGACCAGATTTCGACGCAT
CCTTGAGCTCAACGTCAACAAAACCACTCGACGACCATGGGCGCTGGATA
AAAACATACGGGTGCCGGAGTATTCAACGCCAGGCACGAAGCACAATTTG
CAGTCACGCGTCTTTATCGCCGAAAATACCGCGAGACGGTGCATCCGCAG
ACGACAGAAAATGTCCTAAAGGATATTTCTGTTGGCCAAAGTAGACCTCG
CATTGATACAGTAGTAGATCAACGGCCACGGTAGCCTTGCTCCAGGCGGG
TAGGCAGTATGACGCTGAGGCGCGCGCACCCAAATCCGGCTTGTCATAAA
ATCCAAGTCTGTCGTGCATGATGTATCGAAATTCTAGGTTTTCTTCGCCG
AACTGTTTGCACGAGAACGCCTTTGGTCTCATGAGCAAAACTCTGTTAAT
AGTGGTCGCTTGAGGGTGCTTCCGGCGTCGTGATCATGACTCCGTCAAAG
CAATAGTTTACTGTGTGCTGGAGCAGGCGTGCCCACGTACATTGTACCTT
TGTTTCCTGTGGTGTCGTTGGATGACCGTTGGATGGTCGTTGGACGTAAA
ACAGAGAGATATTATAAATAGTACTTTCGCGCTGACAACAGTGCGTTCGT
TCCCACCTTACCCAATGTGTGGCTGCTGCCCAGAGCCTCAACTGACCGAA
GTGATCTCCCCTCAACAAACGTCCGGCGGCACATGTATTAGTCTAATAGT
ATTGGTATTAATAGCGAGGAGAATCGGGTCGTCACCAAAAGTATTAGTCT
ACTGGGCCAATCTTTTGGCTTTAGGAATTGTTTGAAGTCCCCAAAACAAT
CGCTCTGTAATATGGTGTTAAGCGCGCGAAACATGTCTGACGGCCCCGGA
AGCGTACGCGTATTGCCCCGGCAAGACATTTGCTCACGGTGTCCCCATGC
CGGGGAAGGACATGCTTTCGCGAGACATCCCAGGAAAAGTTTGTGATGTC
GACACAAGGTTTGTGGGATTGGTGACCTAGCCCGTTGAAGCCCATCGGCC
GTAAGTGAGATACAAAAAACAAATAACAAAAAAAAAACACCCCCCCAGTA
CAACCATATGTTGTGTGGTGGATTGACTCTGGCAATGGTACGAGATCGGC
CACTTTATGCTAATATTTAATATTAATAGAAGAAATACTGTGGGGTACCA
TTAACATAAATAAACGAATCTTCCGGACACCTCGTACGCAAGCAGCACGC
GCGCGACACGTAGTAAGCTTGCACGATAACGCACTATTTAGAGCTTCTTT
ACTTTACATTTCCTCATCTCATTGTTCAGAGAAGGATAGAGTTCAAAGTC
CAAGAGGTGGACTGTTAGGAGAAAATAATATAACGGAAGATGAGGCTCAA
CGTAACCGATCCGATATATTGACGAACAAAGGATAGCACGAAGAGGGCGA
AAGGTACATTGATGAACAAAGCGATGCAGCTCGACGATGAGCAGGCGCAC
ATTTAGTGTTTAATTCGCTGAGCGCTATTATCTGATGGTGCATGTGATGG
TGTTATCTAATGACGTGTATTTTGGCTTACGTCGATGGGGAAGGAAGCCG
AGGACGTGCATGGCACCGAGAAATGAGATATTCCGTCGGCAACAGGTCTC
TTACCGCCGAACGAGGCACCGCCCCAGTTGCTCGGACTGTACAAGTACCG
AAAATTTGGCGTGCTGGCCACCAACTAGAATCGTTTTCGCAGCCACATGG
ATCCACAACCCTGCTAATTTTTTCCTTCTGCTACTGCAACATGGATCCAC
AACCCTATATTTCACGCCCGAGGAAGCGCAGTAGCGTTGATTGAAAATAT
TGTCACATAAACGGCCAGTTATTTATCAGCCACATTTATCTCAACTCTTA
GCTGGCTATCAATGGGCACCTATTATGGAAATTTGGCTTCAGGTTCGTTG
GTTGCTGGACGTATAATATTGACGTTTAGAGGCGAAACGCGTGCGGTATA
CTATTTTTCACATTCAGCGCTCGTCGCTCGAGTGGCCTTGTAGGTAATCT
GCACACCTGCTAGTGCGGAAATCGTGAGTTCGATTCTTACCAAAGTAGGA
TTTGTGTTCTTTCTTCCGTAACGGAAAGCGTGGGAATTTGAGTTAGTAGT
AAAATTCAACCATTGGTTGACGAGTTGTAACATTGCTGAACTTGCATCGC
GATAAAAAATCGCAAGGCGTGAACCGGGGAGATATGGAAGATCCTTAGTG
ATCATAGGCAGGATGGTAATGATGAGGTCCATCAGCTACTGTATAAGTGA
GATTGAAGAAAAGAAAAGGAAAGAAAGTGCAACAGTTACCGGTTCTCGTT
AATATTCACGTACGCCCGGTACAGCAGTGATGATCTCGATTCAAGGCAGC
TGTCTACCTCTTTACACTCCTCCCATGGCACTAAGTTGCTGTCACCCGTG
CACCGAATTCCTTTAAAAAAAAAAAAAAAATCAGAGCATTTAATGGGAAC
GTCTCAATACTGACGACGGTCGAGATTTCCTCCCAGTTCCCGTTTCATAC
GTCAAGTAACCGGGAACAGTGAGATGTGGCCGCAAGTATTGGGAGAGCAC
GCGTACACGATCATGTCCTTGGGATATCGTGAGAAATTTTGCACTGTAAG
TTTCATGTGCGTTCAATTTTTTATCGCACTAAGGGGACAGATATATCGTT
GTATTGCACCCCCTCCCTTCAAGTACAGAAATAGCTGATAGGAGAATCAA
TTGCTGCAATCGCCAGCTATTTTGCTGTAGCCTTTCCCGTCGACGCGACG
ACTGTTACTGGTACACCCGGGGTGAATCGACCACGGTGATGCGTATCTCC
TCTACACCTGCCCCCTCTCTTATTTCGGTTGGCTTACGTCTTTTGGGTCT
AGGCCCAACCCCCTCAGCAGCAGACTGCTACTGCTGCGTGTCCTCGTCCA
ACTGTAGTTGTCTTGGCTGTCCTCTGTGTCCGGATAGGATCCCTTCCCTG
GCCTTCCGACCATCCCGAAGGAGCAGCTGACTTATCGTGAAGTCTAAAGA
GAAGCTGACGCGTGTAGGATTCGCCCGGCCGATAAGGTCCAAACTGACCG
TACCAGAAAAATACCTCGGGTGTCAACCTCGGCAGGTCCATGTATGTACT
TCGTATGTATGTACGGTCAGCACTTTCAGCAGAGTAGGCCGGTCGCCCCG
GTAGCTCCGTTGGTAACCTCGTAACCTTCTGACACGTTGGGACGTGAGTT
CGAATCCCGGTAACCGGGATTTTTCCTCACTAAAAAGTAAAAAATAAAAA
TAAAAATGCCCAACAAGCGGAGAACGATTAAAATCGTTTGTACACAAAAT
TCGACTTCACGGTCGGCGAGGGAAAATAACGGCTGAATCTTTCTCGCGAG
AAAAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAAAAATCCTGTGT
GACCTCCCTCCTGTGTGAACCCCGGCTGGTACATCCAACGAACTTGAAGT
CCAGAATCAATGGGAAGAAAACACACAACAAAAAACATGGATCAACCGGG
TAAGGTTACCTCTCCTTGTCAGCTAAACAGGAAAATAACTCTTCTCCCTG
CCCCCGTTCGCGCCTGAAAATTTGATCTCGCGAGACTGGTTAGGTAGTCC
CGCCCCGCGTCAGCCCGCTCATTCTCCACACTCGTACGGCGTCATAGTCC
AATCTGGGTCTTACTCACAGGATGTATCCCGCTTTCCGTGACGGCGTCAT
AGTCCATTTATATATATGCCTTCAACCACCATCGGGTCAGCAGTCCCGAG
TTGATCAGGTCACGAAATTTCGTACCGACGACGTTCACAGCCGAGAGGCC
GTCGGCGCAGGGCCAGTCAGCCCCATGGTAAGTTCCAGTAAGTATAAAGA
CGCGGTTCTGGTGTACGAAAGGCTTTGACTGTTTTTCAGAGATTTGAAGA
AAATACAGTACCTAAGTAAAGACGGTGAAACACCTTCTAATACAATAGGG
GTCATCGCTCCCTCTACCTCCAGTCCGTGCTTCTATCGCTATTGGTTGTG
CCGCATTTCGCTTCAAGGACTGCGCAAACAACCTTGCAACACGTGCTTAG
TACGATATATCGTAGCTGACGCTGTGCATCCAAACCAAACCCCCATTATG
TGCAATAAATCAGAACCGGGACAGTTTTATCTTCCGGCTGAGGGCGGTGG
TATTTGGCGTTACCCCAGTGATGGCCTATTTTGGTATTTGCACCCCCGGG
TTGTGCCGGAGGGTTGTTAATGAAGGATATGTTTTGCTTCAACGCGTTGC
CTACTGTACCAGTGTCAGCATTTGGTCTGTCGTATGCTTCTTAGGCACCT
AATGCATTAAACCTATCGCAAAAAAAAATAGCTTAGCGGTTCCTACTCGT
GTTGGGTAGACAACTTATTTCCAGGCCATTGGGTATGACTGCATTGCTCT
CGGAAAACGATGTGATCAACGTAGGTAAGTTAGTACAAGCAGATCGTACT
CGTAGACAGCAGTCGTTTCAAAGCGCAAGGAGACTTTGAGACCATTTTAG
GATACTACAATTATAATAAAGCAAGACGTTACTCCTCAACATGCTGAAGA
ACTTAACACCACCCAATACACTTCCGTTTCACCGTGTGATGCATGTAAAG
TACTCTACGTCGTATGCTGCGATATGATTCTTTCACACTGTCATATACCT
GGTACCTGGTATCATACTGTCCCATGATGTAAGCATTTTCATACATACGC
CCGCGCCGCCTCTTTGCCTCCGATTCCTTGCGTTTCGTTTTGGGTCGCTT
GCCACAGGGCGTCTTGAAGAAGCTTGGAATCACCGGAGGCAAGGGAGGCA
AGGAGGCGCTACTGAGAGAGTTAAACGAAGGTGCCACAAGCTCTTCGCTT
CAGGGGCAACAGAGACAAGACGTGTAATGTTGTGGTGCTCGTGCTGTTGT
GCGCGGCGGGTGTGAAGTAAAATAAGGTCTGCAATAGAGGTATGCGGAGC
GGAACAAAGTAGTATTTACTATATACTAATACTCTGTAGAGAACGTTGGA
CTGTTCTGGTCTCCGTCGACCCATCTGGTGTGATACACCGAAGTGTATAT
TAATTCACGGTTATGTTAGTCAGAGGAGGAAATAATGACCCTGTGGATCT
CTCACCTCGCCAACTCCCCGCTCCCCCTTTGCTGCCACCGATCCCATTAC
GAAAACCTTGCTTGCCATATCAGTGGTGAGGACAAGCATGCTTGACAAGG
AGTCCGCGAGACTCGAGACCATGCGATCCGCCGCGGTGAACGCTAGCGGG
GATAGCAGCAGGCAAGCTTCGAAGTCAGACTCTCGAGGAAGTGGTAACGC
CCCTCCGAAGTCGGCAACTCCGGGTGAGCGTTCAACATCGATGATTTTTG
ACAGTCGACGTATTACTCGTGCCTTGTAGCTTATAGCTATAACAAAAGTA
TTTATTTCGACGGGTTAGGGTTAACGAGGGCTGGTCCTGAGGTAGCCCCC
GGGAAAAAAAAGCAAAAAAAGACTGGCGCCTGGTCTTACCATCTCCCCCG
TTGCCCTTTGTCACGCCCTTGTCCTTTACTTGTTCCTTATGCCCGCCGCC
ATGAAGCCTCGAAGGGCATGCTGTAGTCCGTAGTACACGTTTCTGGAGCC
AAACGGTAGGTTCCTGACGGAAGGACCCGCTGTCGACATAGCCAGAAAAA
TGCTTGACGGTTATAAGCCTGGAAATATTTAGCAGGATTCGGCGAACGAT
GCGTAAAGCTATGCATAATTTACTTCGCGTTAAAACAAGGAAGATGTCTC
CAGGAAAACATACAAGTAGAAGCTGCGCCAAACCTTGGAACACCGTCAGG
CAGCGCAGATAAGTCTACCGTTGACCAGATTGATTGTACTGTACCATTTT
TCTATGTGTTTGACCTTTCGGAAATCCACTCGTACGCGGGGTTTTCATGA
TTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig905:76335..83637-

>mRNA_A-nodosum_M_contig905.4.1 ID=mRNA_A-nodosum_M_contig905.4.1|Name=mRNA_A-nodosum_M_contig905.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig905:76335..83637- (Ascophyllum nodosum dioecious)
ATGGCCGTCAAGATGGTCGAGGGAAAGGGAACCAGGGTCGCGCTCGAAGA
GCAAATCGACGAGCTGGAGCGACGAGAAGGGGTTTTGTTGAGCGCGCTGA
CCGATGAGGAATGGGCGGAGGGCGTCTTGAAGAAGCTTGGAATCACCGGA
GGCAAGGGAGGCAAGGAGGCGCTACTGAGAGAGTTAAACGAAGTGGTGAG
GACAAGCATGCTTGACAAGGAGTCCGCGAGACTCGAGACCATGCGATCCG
CCGCGGTGAACGCTAGCGGGGATAGCAGCAGGCAAGCTTCGAAGTCAGAC
TCTCGAGGAAGTGGTAACGCCCCTCCGAAGTCGGCAACTCCGGCCTCGAA
GGGCATGCTGTAG
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