mRNA_A-nodosum_M_contig905.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig905.1.1
Unique NamemRNA_A-nodosum_M_contig905.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 9.520e-67
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKKA  KK++NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 192 bits (488), Expect = 4.420e-61
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKAS-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKKA+ GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.880e-60
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKKA  K K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.990e-59
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKAS-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKKA+ GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 186 bits (473), Expect = 8.010e-59
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+S KAPKKA+   KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 184 bits (468), Expect = 4.340e-58
Identity = 97/116 (83.62%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ KAPKKA  K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.090e-58
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKAS--GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKK    GK +  KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.210e-57
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+  APKKA GK+ S KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.780e-57
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    7 KTPSKKSVKAPKKAS-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            KTPSK+S KAPKKAS G  KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Match: A0A482SFE7_9ARCH (Histone domain-containing protein n=2 Tax=archaeon TaxID=1906665 RepID=A0A482SFE7_9ARCH)

HSP 1 Score: 177 bits (448), Expect = 5.660e-55
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MAKTPS----KKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTP+    KK+VK PKKA+G KK  KRTESYS+YIY+VLKQVHP+TGISKRGMSI+NSFIND+FER+A ES +L+RYNKK+TLSSRE+QTAVRL+LPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPAPSVGKKAVKTPKKATGGKKHAKRTESYSTYIYRVLKQVHPNTGISKRGMSILNSFINDIFERIALESSRLSRYNKKSTLSSREIQTAVRLLLPGELAKHAVSEGTKAVTKFTS 119
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig905.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI9.520e-6795.69Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA4.420e-6188.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA3.880e-6086.21Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJT3_9STRA2.990e-5988.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC8.010e-5985.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
H2B_OLILU4.340e-5883.62Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA5.090e-5883.90Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A6U6DWX5_9STRA2.210e-5785.34Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA4.780e-5786.09Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
A0A482SFE7_9ARCH5.660e-5579.83Histone domain-containing protein n=2 Tax=archaeon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig905contigA-nodosum_M_contig905:31647..32061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size415
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue4.7e-68
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size351
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870353.893092-UTR-A-nodosum_M_contig905:31646..317101680870353.893092-UTR-A-nodosum_M_contig905:31646..31710Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig905 31647..31710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870353.906868-CDS-A-nodosum_M_contig905:31710..320611680870353.906868-CDS-A-nodosum_M_contig905:31710..32061Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig905 31711..32061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig905.1.1prot_A-nodosum_M_contig905.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig905 31711..32061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig905.1.1

>prot_A-nodosum_M_contig905.1.1 ID=prot_A-nodosum_M_contig905.1.1|Name=mRNA_A-nodosum_M_contig905.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MAKTPSKKSVKAPKKASGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at A-nodosum_M_contig905:31647..32061-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig905.1.1 ID=mRNA_A-nodosum_M_contig905.1.1|Name=mRNA_A-nodosum_M_contig905.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=415bp|location=Sequence derived from alignment at A-nodosum_M_contig905:31647..32061- (Ascophyllum nodosum dioecious)
ATGGCCAAGACTCCTTCGAAGAAGTCCGTGAAAGCACCCAAAAAGGCCAG
TGGCAAGAAGAAGTCCAACAAGAGGACCGAGTCGTACTCGTCCTACATCT
ACAAAGTACTTAAGCAAGTTCACCCGGACACAGGAATTTCGAAACGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTTGCTGG
TGAGTCTGGCAAGCTTACCCGCTACAACAAGAAGGCTACTCTATCCTCAC
GCGAAGTACAGACTGCAGTGCGTCTGATGCTTCCAGGAGAGCTTGCCAAG
CACGCCGTTTCTGAGGGCACGAAGGCCGTCACCAAGTTTACTTCATCCTA
AGTATTTTGTCAAAGATTCGGCGTGTGCACGCTATTCGTCGCCAGCCTCC
CTAAACCACCTGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig905:31647..32061-

>mRNA_A-nodosum_M_contig905.1.1 ID=mRNA_A-nodosum_M_contig905.1.1|Name=mRNA_A-nodosum_M_contig905.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig905:31647..32061- (Ascophyllum nodosum dioecious)
ATGGCCAAGACTCCTTCGAAGAAGTCCGTGAAAGCACCCAAAAAGGCCAG
TGGCAAGAAGAAGTCCAACAAGAGGACCGAGTCGTACTCGTCCTACATCT
ACAAAGTACTTAAGCAAGTTCACCCGGACACAGGAATTTCGAAACGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTTGCTGG
TGAGTCTGGCAAGCTTACCCGCTACAACAAGAAGGCTACTCTATCCTCAC
GCGAAGTACAGACTGCAGTGCGTCTGATGCTTCCAGGAGAGCTTGCCAAG
CACGCCGTTTCTGAGGGCACGAAGGCCGTCACCAAGTTTACTTCATCCTA
A
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