prot_A-nodosum_M_contig904.5.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig904.5.2
Unique Name	prot_A-nodosum_M_contig904.5.2
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	439

Homology

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BLAST of mRNA_A-nodosum_M_contig904.5.2 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 3.830e-122
Identity = 244/414 (58.94%), Postives = 280/414 (67.63%), Query Frame = 0

Query:    1 MFRRSQHPASRLSNAEMKKLEQLFLMVDSCTVDMGRGGQDSTTAAQLADAINGYPNATIVYEVMRRIRKCFKSSNPRVVARALYLTDVLMESCGPHARREVGSDKFLKLVCKLCKVTKTKMDPAWHTVAAQAQGHLAHWAEASEQTLGPGNRFSQAYENLRRDGVQFRSSSSLGPGARRSSEARSGFGNGGGSGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVVESFRSPRTGRRQPGVGMLESGDVGYDEEAELAKAIMESSLGVAGNGSQGGGARGPGDLAAA------AEDGDLLSMVPPTIEALMDIMESSKDMAELLDNDAAPDVVDLTRGLVEQVIKKVEELEREGNPDEKDMDRYLKAHDDLQTVLRVYEGVLDGKNTLPLT 408
            MFRRS HPAS+L+N E+KKLEQLFLMVD+CT+DM RG QD  T++QLADAINGYPNAT+VYEVMRRIRKCFKSSN +VV RAL LTD LM+SCG HARREV SDKFLKL+ KLCKVTKT++DP+W TV+ +AQ  +  WAEASE+ +G G+RF+Q YENLRRDGV F                R G G+GG +G                                    XXXXXXXXXXXXXXXX     FRS        G  +L  GD GYDEEA+LA AI  SS  ++G               A       AE+G+LLSMVPPTIEALMDIME SKD+ ELL N+ APDVVD TR LV+QVIKKVE+L   GNPDEKD+DRYLKAHDDLQTVLRVYEGV+DG  TLPL+
Sbjct:    1 MFRRS-HPASKLTNTELKKLEQLFLMVDNCTLDMQRG-QD--TSSQLADAINGYPNATMVYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKLIGKLCKVTKTRLDPSWQTVSERAQDLVVGWAEASERMVGSGSRFTQLYENLRRDGVLF----------------RGGSGSGGRNGA--------------------------------IGAXXXXXXXXXXXXXXXXXXXXRFRSA-------GGSVLRPGDEGYDEEADLAAAIFASS--ISGTXXXXXXXXXXXXXXAVNSGLPTAENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLS 353

[Close]

BLAST of mRNA_A-nodosum_M_contig904.5.2 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 4.850e-110
Identity = 243/424 (57.31%), Postives = 277/424 (65.33%), Query Frame = 0

Query:    1 MFRRSQHPASRLSNAEMKKLEQLFLMVDSCTVDMGRGGQDSTTAAQLADAINGYPNATIVYEVMRRIRKCFKSSNPRVVARALYLTDVLMESCGPHARREVGSDKFLKLVCKLCKVTKTKMDPAWHTVAAQAQGHLAHWAEASEQTLGPGNRFSQAYENLRRDGVQFRSSSSLGPGARRSSEARSGFGNGGGSGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVVESFRSPRTGR-RQPGVGMLESGDVGYDEEAELAKAIMESSLG-----VAGNGSQGGGARGPGDLAAAAEDGDLLSMVPPTIEALMDIMESSKDMAELLDNDAAPDVVDLTRGLVEQVIKKVEELEREGNPDEKDMDRYLKAHDDLQTVLRVYEGVLDGKNTLPLTNNLADLATGG 418
            MFRRS HPAS+L+N E+KKLEQLFLMVDSCT+DM RG     T++QLADAINGYPNAT+VYEVMRRIRKCFKSSN +VV RAL LTD LM+SCG HARREV SDKFLK++ KLCKVTKT++DP+W  V+ +AQ  +A WA  SE+ +G G+RF+Q YENLRRDGV FR  S                                                    XXXXXXXXXXXXXXXXXXXXXXX           GR R  G  +L  GD  YDEEA+LA AI  SS+                 R        AE+G+LLSMVPPTIEALMDIME SKD+ ELL N+ APDVVD TR LV+QVIKKVE+L + GNPDEKD+DRYLKAHDDLQTVLRVYEGV+DG  TLPL+       T G
Sbjct:    1 MFRRS-HPASKLTNTELKKLEQLFLMVDSCTLDMQRG---QNTSSQLADAINGYPNATMVYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKVIGKLCKVTKTRLDPSWQMVSERAQELVAGWA--SERMVGSGSRFTQLYENLRRDGVPFRGGSXX--------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRFRSAGGSVLRPGDESYDEEADLAAAIFASSISGTVXXXXXXXXXXXXXRAVNSGLPTAENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGXXXTRG 368

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig904.5.2 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig904.5.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEH3_ECTSI	3.830e-122	58.94	VHS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JQS7_9PHAE	4.850e-110	57.31	VHS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 350..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 418..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..271
None	No IPR available	PANTHER	PTHR45898:SF4	TARGET OF MYB PROTEIN 1	coord: 26..402
None	No IPR available	CDD	cd03561	VHS	coord: 26..162 e-value: 1.61085E-19 score: 82.3124
None	No IPR available	SUPERFAMILY	89009	GAT-like domain	coord: 317..401
IPR002014	VHS domain	SMART	SM00288	VHS_2	coord: 23..164 e-value: 0.0012 score: 17.9
IPR002014	VHS domain	PFAM	PF00790	VHS	coord: 40..161 e-value: 6.0E-10 score: 39.1
IPR002014	VHS domain	PROSITE	PS50179	VHS	coord: 31..168 score: 17.417603
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 12..177 e-value: 5.4E-20 score: 73.5
IPR008942	ENTH/VHS	SUPERFAMILY	48464	ENTH/VHS domain	coord: 25..167
IPR044836	TOM1-like protein, plant	PANTHER	PTHR45898	TOM1-LIKE PROTEIN	coord: 26..402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig904	contig	A-nodosum_M_contig904:50856..73274 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig904.5.2	mRNA_A-nodosum_M_contig904.5.2	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig904 50798..73274 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig904.5.2 ID=prot_A-nodosum_M_contig904.5.2|Name=mRNA_A-nodosum_M_contig904.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=439bp
MFRRSQHPASRLSNAEMKKLEQLFLMVDSCTVDMGRGGQDSTTAAQLADA
INGYPNATIVYEVMRRIRKCFKSSNPRVVARALYLTDVLMESCGPHARRE
VGSDKFLKLVCKLCKVTKTKMDPAWHTVAAQAQGHLAHWAEASEQTLGPG
NRFSQAYENLRRDGVQFRSSSSLGPGARRSSEARSGFGNGGGSGRSFGVG
GGSFRSSVGGGSGFGSSVGGGGGFRSSAGGGGGFRSSAGGGGGFGSSVVE
SFRSPRTGRRQPGVGMLESGDVGYDEEAELAKAIMESSLGVAGNGSQGGG
ARGPGDLAAAAEDGDLLSMVPPTIEALMDIMESSKDMAELLDNDAAPDVV
DLTRGLVEQVIKKVEELEREGNPDEKDMDRYLKAHDDLQTVLRVYEGVLD
GKNTLPLTNNLADLATGGARGPLGNGRCVDSSDDDEPLV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002014	VHS_dom
IPR008942	ENTH_VHS
IPR044836	TOL_plant