prot_A-nodosum_M_contig9038.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9038.1.1
Unique Nameprot_A-nodosum_M_contig9038.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length40
Homology
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.460e-17
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGR+PLWLVAL GGLGVIVVVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: B7T216_VAULI (Photosystem II reaction center protein J n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T216_VAULI)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            M GTGRIPLWL+AL+GGLGV+ VVG+FIFG+YSGLGSSL
Sbjct:    1 MTGTGRIPLWLIALIGGLGVLAVVGSFIFGAYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A7S6ZPA6_9STRA (Photosystem II reaction center protein J n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.340e-14
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            M   GR+PLWLVALVGGLGVI VVGTFIFGSYSGLGSSL
Sbjct:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A7U0QG16_OLILU (Photosystem II reaction center protein J n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0QG16_OLILU)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-13
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRIPLW+VA+V GLG++ V+GTFI+G+YSG+GSSL
Sbjct:    1 MAGTGRIPLWMVAVVAGLGILAVLGTFIYGAYSGIGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: C6KIX8_9STRA (Photosystem II reaction center protein J n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KIX8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.570e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MA TGRIPLWL+ALVGGL VIVV+  FI+GSYSGLGSSL
Sbjct:    1 MASTGRIPLWLIALVGGLAVIVVLSAFIYGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A516ZAG8_9STRA (Photosystem II reaction center protein J n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.910e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRIPLWLVALVGGL VI ++  FI+GSYSGLGSSL
Sbjct:    1 MAGTGRIPLWLVALVGGLAVIAMLSIFIYGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: PSBJ_GRATL (Photosystem II reaction center protein J n=139 Tax=Rhodophyta TaxID=2763 RepID=PSBJ_GRATL)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGR+PLWLVA VGG+ VI V+G FI+GSYSG+GSSL
Sbjct:    1 MAGTGRVPLWLVATVGGIAVITVLGIFIYGSYSGIGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A3R5V0N1_9STRA (Photosystem II reaction center protein J n=13 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5V0N1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MA TGR+PLWLVA V GLG++ +VG FI+GSYSGLGSSL
Sbjct:    1 MASTGRVPLWLVAFVAGLGILTIVGIFIYGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: PSBJ_PHATC (Photosystem II reaction center protein J n=55 Tax=cellular organisms TaxID=131567 RepID=PSBJ_PHATC)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MA TGRIPLWLV LVGGL VI ++G FI+GSYSGLGSSL
Sbjct:    1 MANTGRIPLWLVGLVGGLAVITMLGLFIYGSYSGLGSSL 39          
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: B2XT29_HETAK (Photosystem II reaction center protein J n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT29_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRIPLW+VA VGGLGVI V+  FI+G+YSGLGSSL
Sbjct:    1 MAGTGRIPLWMVATVGGLGVIGVLSLFIYGAYSGLGSSL 39          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D2_ECTSI8.460e-1794.87Photosystem II reaction center protein J n=52 Tax=... [more]
B7T216_VAULI1.160e-1482.05Photosystem II reaction center protein J n=1 Tax=V... [more]
A0A7S6ZPA6_9STRA3.340e-1487.18Photosystem II reaction center protein J n=1 Tax=S... [more]
A0A7U0QG16_OLILU3.920e-1374.36Photosystem II reaction center protein J n=1 Tax=O... [more]
C6KIX8_9STRA5.570e-1382.05Photosystem II reaction center protein J n=1 Tax=A... [more]
A0A516ZAG8_9STRA7.910e-1382.05Photosystem II reaction center protein J n=3 Tax=D... [more]
PSBJ_GRATL1.120e-1276.92Photosystem II reaction center protein J n=139 Tax... [more]
A0A3R5V0N1_9STRA2.270e-1274.36Photosystem II reaction center protein J n=13 Tax=... [more]
PSBJ_PHATC3.230e-1279.49Photosystem II reaction center protein J n=55 Tax=... [more]
B2XT29_HETAK3.230e-1279.49Photosystem II reaction center protein J n=2 Tax=H... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002682Photosystem II PsbJPFAMPF01788PsbJcoord: 1..39
e-value: 2.5E-21
score: 75.3
IPR002682Photosystem II PsbJHAMAPMF_01305PSII_PsbJcoord: 1..39
score: 15.238333
NoneNo IPR availableGENE3D6.10.250.2070coord: 1..39
e-value: 1.6E-17
score: 64.9
IPR037267Photosystem II PsbJ superfamilySUPERFAMILY161021Photosystem II reaction center protein J, PsbJcoord: 6..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12216..12335 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.1.1mRNA_A-nodosum_M_contig9038.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9038 12216..12335 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9038.1.1 ID=prot_A-nodosum_M_contig9038.1.1|Name=mRNA_A-nodosum_M_contig9038.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=40bp
MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002682PSII_PsbJ
IPR037267PSII_PsbJ_sf