mRNA_A-nodosum_M_contig9038.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9038.1.1
Unique NamemRNA_A-nodosum_M_contig9038.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 8.460e-17
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MAGTGR+PLWLVAL GGLGVIVVVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: B7T216_VAULI (Photosystem II reaction center protein J n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T216_VAULI)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            M GTGRIPLWL+AL+GGLGV+ VVG+FIFG+YSGLGSSL
Sbjct:    1 MTGTGRIPLWLIALIGGLGVLAVVGSFIFGAYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A7S6ZPA6_9STRA (Photosystem II reaction center protein J n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.340e-14
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            M   GR+PLWLVALVGGLGVI VVGTFIFGSYSGLGSSL
Sbjct:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A7U0QG16_OLILU (Photosystem II reaction center protein J n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0QG16_OLILU)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-13
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MAGTGRIPLW+VA+V GLG++ V+GTFI+G+YSG+GSSL
Sbjct:    1 MAGTGRIPLWMVAVVAGLGILAVLGTFIYGAYSGIGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: C6KIX8_9STRA (Photosystem II reaction center protein J n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KIX8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.570e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MA TGRIPLWL+ALVGGL VIVV+  FI+GSYSGLGSSL
Sbjct:    1 MASTGRIPLWLIALVGGLAVIVVLSAFIYGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A516ZAG8_9STRA (Photosystem II reaction center protein J n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.910e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MAGTGRIPLWLVALVGGL VI ++  FI+GSYSGLGSSL
Sbjct:    1 MAGTGRIPLWLVALVGGLAVIAMLSIFIYGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: PSBJ_GRATL (Photosystem II reaction center protein J n=139 Tax=Rhodophyta TaxID=2763 RepID=PSBJ_GRATL)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MAGTGR+PLWLVA VGG+ VI V+G FI+GSYSG+GSSL
Sbjct:    1 MAGTGRVPLWLVATVGGIAVITVLGIFIYGSYSGIGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: A0A3R5V0N1_9STRA (Photosystem II reaction center protein J n=13 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5V0N1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MA TGR+PLWLVA V GLG++ +VG FI+GSYSGLGSSL
Sbjct:    1 MASTGRVPLWLVAFVAGLGILTIVGIFIYGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: PSBJ_PHATC (Photosystem II reaction center protein J n=55 Tax=cellular organisms TaxID=131567 RepID=PSBJ_PHATC)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MA TGRIPLWLV LVGGL VI ++G FI+GSYSGLGSSL
Sbjct:    1 MANTGRIPLWLVGLVGGLAVITMLGLFIYGSYSGLGSSL 39
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BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Match: B2XT29_HETAK (Photosystem II reaction center protein J n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT29_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL 117
            MAGTGRIPLW+VA VGGLGVI V+  FI+G+YSGLGSSL
Sbjct:    1 MAGTGRIPLWMVATVGGLGVIGVLSLFIYGAYSGLGSSL 39
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D2_ECTSI8.460e-1794.87Photosystem II reaction center protein J n=52 Tax=... [more]
B7T216_VAULI1.160e-1482.05Photosystem II reaction center protein J n=1 Tax=V... [more]
A0A7S6ZPA6_9STRA3.340e-1487.18Photosystem II reaction center protein J n=1 Tax=S... [more]
A0A7U0QG16_OLILU3.920e-1374.36Photosystem II reaction center protein J n=1 Tax=O... [more]
C6KIX8_9STRA5.570e-1382.05Photosystem II reaction center protein J n=1 Tax=A... [more]
A0A516ZAG8_9STRA7.910e-1382.05Photosystem II reaction center protein J n=3 Tax=D... [more]
PSBJ_GRATL1.120e-1276.92Photosystem II reaction center protein J n=139 Tax... [more]
A0A3R5V0N1_9STRA2.270e-1274.36Photosystem II reaction center protein J n=13 Tax=... [more]
PSBJ_PHATC3.230e-1279.49Photosystem II reaction center protein J n=55 Tax=... [more]
B2XT29_HETAK3.230e-1279.49Photosystem II reaction center protein J n=2 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9038contigA-nodosum_M_contig9038:12216..12335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog251229.Chro_1946
Preferred namepsbJ
PFAMsPsbJ
Model size120
Max annot lvl1117|Cyanobacteria
KEGG koko:K02711
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.07e-12
EggNOG OGs2EGJI@1|root,33ABP@2|Bacteria,1GAM0@1117|Cyanobacteria,3VKSC@52604|Pleurocapsales
DescriptionOne of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation
Cds size120
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870350.5664635-CDS-A-nodosum_M_contig9038:12215..123351680870350.5664635-CDS-A-nodosum_M_contig9038:12215..12335Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9038 12216..12335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9038.1.1prot_A-nodosum_M_contig9038.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9038 12216..12335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9038.1.1

>prot_A-nodosum_M_contig9038.1.1 ID=prot_A-nodosum_M_contig9038.1.1|Name=mRNA_A-nodosum_M_contig9038.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=40bp
MAGTGRIPLWLVALVGGLGVIVVVGTFIFGSYSGLGSSL*
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mRNA from alignment at A-nodosum_M_contig9038:12216..12335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9038.1.1 ID=mRNA_A-nodosum_M_contig9038.1.1|Name=mRNA_A-nodosum_M_contig9038.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12216..12335- (Ascophyllum nodosum dioecious)
ATGGCAGGAACAGGAAGAATACCACTTTGGCTAGTTGCATTAGTTGGTGG
ATTAGGAGTTATTGTTGTGGTTGGTACTTTTATTTTTGGTTCGTATTCTG
GATTAGGCTCTTCGCTTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9038:12216..12335-

>mRNA_A-nodosum_M_contig9038.1.1 ID=mRNA_A-nodosum_M_contig9038.1.1|Name=mRNA_A-nodosum_M_contig9038.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=120bp|location=Sequence derived from alignment at A-nodosum_M_contig9038:12216..12335- (Ascophyllum nodosum dioecious)
ATGGCAGGAACAGGAAGAATACCACTTTGGCTAGTTGCATTAGTTGGTGG
ATTAGGAGTTATTGTTGTGGTTGGTACTTTTATTTTTGGTTCGTATTCTG
GATTAGGCTCTTCGCTTTAA
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