mRNA_A-nodosum_M_contig90.56.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.56.1
Unique NamemRNA_A-nodosum_M_contig90.56.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:943613..944012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size402
Hectar predicted targeting categorymitochondrion
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.5206811-UTR-A-nodosum_M_contig90:943612..9436911680870340.5206811-UTR-A-nodosum_M_contig90:943612..943691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 943613..943691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870340.533692-CDS-A-nodosum_M_contig90:943691..9440121680870340.533692-CDS-A-nodosum_M_contig90:943691..944012Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 943692..944012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.56.1prot_A-nodosum_M_contig90.56.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 943692..944012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.56.1

>prot_A-nodosum_M_contig90.56.1 ID=prot_A-nodosum_M_contig90.56.1|Name=mRNA_A-nodosum_M_contig90.56.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
MSYKVGLFYKRYKRHLSFCQSTGRRGVDTPRRISRALSLRNLVSGYECGR
VFPVGAGPGSPSRDAATSLASRFSLSVETRRRYGWLTMVFPGARLFRAPI
WCPSGSV
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mRNA from alignment at A-nodosum_M_contig90:943613..944012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.56.1 ID=mRNA_A-nodosum_M_contig90.56.1|Name=mRNA_A-nodosum_M_contig90.56.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=400bp|location=Sequence derived from alignment at A-nodosum_M_contig90:943613..944012+ (Ascophyllum nodosum dioecious)
CAGTCGTCTATGCGTTCTGGCAGTCGCTCTACAGACGGCCGTTTGAATTG
CTTCTGCCCGAAGATCCTTTTATAATGATATGTCATATAAGGTCGGGCTT
TTTTATAAACGATACAAAAGGCATTTGAGTTTTTGTCAATCCACTGGGCG
TAGGGGCGTCGACACCCCACGACGAATATCTCGTGCCCTCTCCCTCCGAA
ACCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGTGGGTGCAGGG
CCGGGCTCACCCTCGAGAGATGCAGCCACCTCGCTGGCTTCGCGATTCAG
CCTGTCGGTTGAGACGCGGCGGCGGTATGGTTGGCTGACGATGGTGTTCC
CAGGTGCGCGCCTCTTCCGAGCTCCAATCTGGTGCCCTTCGGGAAGTGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:943613..944012+

>mRNA_A-nodosum_M_contig90.56.1 ID=mRNA_A-nodosum_M_contig90.56.1|Name=mRNA_A-nodosum_M_contig90.56.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig90:943613..944012+ (Ascophyllum nodosum dioecious)
ATGTCATATAAGGTCGGGCTTTTTTATAAACGATACAAAAGGCATTTGAG
TTTTTGTCAATCCACTGGGCGTAGGGGCGTCGACACCCCACGACGAATAT
CTCGTGCCCTCTCCCTCCGAAACCTGGTTTCGGGGTATGAGTGTGGGAGG
GTCTTTCCGGTGGGTGCAGGGCCGGGCTCACCCTCGAGAGATGCAGCCAC
CTCGCTGGCTTCGCGATTCAGCCTGTCGGTTGAGACGCGGCGGCGGTATG
GTTGGCTGACGATGGTGTTCCCAGGTGCGCGCCTCTTCCGAGCTCCAATC
TGGTGCCCTTCGGGAAGTGTG
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