mRNA_A-nodosum_M_contig90.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig90.33.1
Unique NamemRNA_A-nodosum_M_contig90.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig90.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig90contigA-nodosum_M_contig90:491980..496493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4085
Hectar predicted targeting categoryother localisation
Exons3
Cds size2691
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870338.8538282-UTR-A-nodosum_M_contig90:491979..4923461680870338.8538282-UTR-A-nodosum_M_contig90:491979..492346Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 491980..492346 +
1680870338.8947678-UTR-A-nodosum_M_contig90:495172..4951761680870338.8947678-UTR-A-nodosum_M_contig90:495172..495176Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 495173..495176 +
1680870338.9067564-UTR-A-nodosum_M_contig90:495470..4964931680870338.9067564-UTR-A-nodosum_M_contig90:495470..496493Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig90 495471..496493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870338.8651638-CDS-A-nodosum_M_contig90:492346..4930391680870338.8651638-CDS-A-nodosum_M_contig90:492346..493039Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 492347..493039 +
1680870338.8806546-CDS-A-nodosum_M_contig90:493174..4951721680870338.8806546-CDS-A-nodosum_M_contig90:493174..495172Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig90 493175..495172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig90.33.1prot_A-nodosum_M_contig90.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig90 492347..495172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig90.33.1

>prot_A-nodosum_M_contig90.33.1 ID=prot_A-nodosum_M_contig90.33.1|Name=mRNA_A-nodosum_M_contig90.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=897bp
MVDVSYSYRKRRTEGCGKRTTFGATGTRMTEYCTRDTKSGMGDVRRKKCI
NEGCGKRSTFGVAGTKMANYCAQHAKNGMVDVCSKKCKTEGCGKRPSFGV
AGTRVVEYCAQHAPDGMVNVRSKKCRTEGCGKCAWFGVAGTRMVEYCAQH
APDEMVDVCSRKCRTEGCSKRSSFGVAGTRTVEYCAQHSKNGMVNVCSRK
CRTEGCSKRSLFRVAGTRTVEYCAQHSKNGMCKTEGCGKRPSFGVAGTRM
MEYCAHHAKDGMVNVRSRKCRTKGCGKCPAVVGTKMAEYCAQHAPDGMVD
VCYSYRKRRTEGCGKRTTFGVTGTRMTEYCTRDTKGGMGDVCTKKCRTEG
CGKRSSFGVAGTKMANYCAQHAKNGMVDVCSKKCKTEGCGRRPSFGVAGT
RMAEYCAQHAPDGMVNVRRKKCRTEGCGKCASFGVVGTRMVEYCAQHAPD
EMVDVYSRKCRTEGCSKRSSFGVAGTRTVEYCAQHSKNGMVDVCSRKCKT
EGCGKRPSFGVAGTKMAKYCAQHAKNGMVDVCSIKCKTEGCGKRPSFGVA
GTRMMEYCAHHAKNGMVNVRNRKCRTRGCGKCPSFGVAGTKMAEYCAQHA
KNGMVDVCSRKCTDDSCSKRSSFGVAGTKITNYCAQHAKSGMVDVCSKKC
KTEGCGRRPSFGVAGTRMVEYCAQHAPDGMVNVRSRKGRTEGCGKYPSFG
VAGTRMVEYCAQHAKNGMADVCSKKYRTEGCGKQPSFGVAGTRTAEYCAF
HAPDEMVKFSLNCARRGCNKHTPFGGAGVRQVKYCAHHTRPTRGVGGYGR
REIGPHRSGKETIGDPCSSGVKRKTIHPYTAQASPLSGGSGGSRKRVPLP
DMTSTALKRAIAQQSAAGAVTLPWSDGQKSPIKRDSYLKTELQLSL*
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mRNA from alignment at A-nodosum_M_contig90:491980..496493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig90.33.1 ID=mRNA_A-nodosum_M_contig90.33.1|Name=mRNA_A-nodosum_M_contig90.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4514bp|location=Sequence derived from alignment at A-nodosum_M_contig90:491980..496493+ (Ascophyllum nodosum dioecious)
GCTGTGGGCAACATATCAAGGGTGAGACGTTCGATTTCTCCAGCCGCATA
AACTGCCGAACCGAAGGCTACGGTAAGCATCCATATTTTGGAGTGACCGA
CACAGAAATTGGTGGAGTACTTTTCACAGCACGCCCCCGATAGAACAGTC
GACGTCCGCAAAAGAAGGTGCAGAAGGTTGCGGCAAGCGGTTGTCGTTTG
GAGTGGCCGGCACCAGAATGGCGGAGTAAGGTACATATCACACGAAGAGC
GGAGTGGTCGACGTCTGCAGAAGAAAGCGAAGAACCGAAGGCTGCGGCAA
GTGTCCGTCGTTCGGAGTGGTCGGGACAAGAACGGCGGAGTACTGCGCAC
AGCATGCGAAGGACGGGATGGTCGACGTGTCCTACAGCTACAGAAAGCGC
AGAACCGAAGGCTGCGGCAAGCGAACGACATTCGGAGCGACCGGCACCAG
AATGACCGAGTACTGTACACGGGACACGAAGAGTGGGATGGGCGACGTGC
GCAGAAAAAAGTGCATCAACGAAGGATGTGGCAAGCGTTCGACGTTCGGA
GTGGCCGGCACAAAAATGGCGAATTACTGTGCACAGCACGCAAAGAACGG
GATGGTCGACGTCTGTAGCAAAAAGTGCAAAACCGAAGGATGTGGCAAGC
GACCATCGTTCGGAGTGGCCGGCACCAGAGTGGTCGAGTACTGTGCACAG
CACGCCCCGGACGGAATGGTCAACGTCCGCAGCAAAAAGTGCAGAACCGA
AGGCTGCGGCAAGTGTGCTTGGTTCGGAGTGGCCGGCACCAGAATGGTGG
AGTACTGTGCACAGCACGCCCCGGACGAGATGGTCGACGTGTGCAGCAGA
AAGTGTAGAACCGAAGGCTGTAGCAAGCGATCGTCGTTCGGAGTGGCGGG
AACAAGAACGGTGGAGTACTGTGCACAGCACTCGAAGAACGGGATGGTCA
ACGTGTGCAGCAGAAAGTGCAGAACCGAAGGCTGCAGCAAGCGATCGTTG
TTCCGAGTGGCGGGAACAAGAACGGTGGAGTACTGTGCACAGCACTCGAA
GAACGGGATGGTCGACGTCTGCAGCAGAAAGTGCAAAACCGAAGGATGTG
GCAAGCGACCGTCGTTCGGAGTGGCCGGCACAAAAATGGCGAAATACTGT
GCACAGCACGCGAAGAACGGGATGGTCGACGTCTGCAGCATAAAGTGCAA
AACCGAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGGCCGGCACCAGAA
TGATGGAGTACTGTGCACATCACGCGAAGGATGGGATGGTCAACGTCCGC
AGCAGAAAGTGTAGAACAAAAGGTTGTGGCAAGTGTCCGGCGGTAGTCGG
GACAAAAATGGCGGAGTACTGTGCACAGCACGCCCCGGACGGGATGGTCG
ACGTGTGCTACAGCTACAGAAAGCGCAGAACCGAAGGCTGCGGCAAGCGA
ACGACGTTCGGAGTGACCGGCACCAGAATGACGGAGTACTGTACACGGGA
CACGAAGGGCGGGATGGGCGACGTGTGCACCAAAAAGTGCAGAACCGAAG
GGTGTGGCAAGCGTTCGTCGTTCGGAGTGGCCGGCACAAAAATGGCGAAC
TACTGTGCACAGCACGCGAAGAACGGGATGGTCGACGTCTGTAGCAAAAA
GTGCAAAACCGAAGGATGTGGCAGGCGACCGTCGTTCGGAGTGGCCGGCA
CCAGAATGGCGGAGTACTGTGCACAGCACGCCCCGGACGGAATGGTCAAC
GTCCGCCGCAAAAAGTGCAGAACCGAAGGCTGCGGCAAGTGTGCGTCGTT
CGGAGTGGTCGGCACCAGAATGGTGGAGTACTGTGCACAGCACGCCCCGG
ACGAGATGGTCGACGTGTACAGCAGAAAGTGTAGAACCGAAGGCTGCAGC
AAGCGATCGTCGTTTGGAGTGGCGGGAACAAGAACGGTGGAGTACTGTGC
ACAGCACTCGAAGAACGGGATGGTCGACGTCTGCAGCAGAAAGTGCAAAA
CCGAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGGCCGGCACAAAAATG
GCGAAATACTGTGCACAGCACGCGAAGAACGGGATGGTCGACGTCTGCAG
CATAAAGTGCAAAACCGAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGG
CCGGCACCAGAATGATGGAGTACTGTGCACATCACGCGAAGAATGGGATG
GTCAACGTCCGCAACAGAAAGTGTAGAACCAGAGGCTGCGGCAAGTGTCC
GTCGTTCGGAGTGGCCGGCACCAAAATGGCGGAGTACTGTGCACAGCACG
CGAAGAACGGAATGGTCGACGTGTGCAGCAGAAAGTGCACAGACGATAGC
TGCAGCAAGCGATCGTCGTTCGGAGTAGCCGGAACAAAAATAACAAATTA
CTGTGCACAGCACGCGAAGAGCGGGATGGTCGACGTCTGCAGCAAAAAGT
GCAAAACCGAAGGATGTGGGAGGCGACCGTCGTTCGGAGTGGCCGGCACC
AGAATGGTGGAGTACTGTGCACAGCACGCCCCGGATGGGATGGTCAACGT
CCGCAGCAGAAAGGGCAGAACCGAAGGCTGCGGCAAGTACCCGTCGTTCG
GAGTGGCCGGCACCAGAATGGTGGAATATTGTGCACAGCATGCGAAGAAC
GGGATGGCTGACGTGTGCAGCAAAAAGTACAGAACCGAAGGCTGCGGCAA
GCAACCGTCGTTCGGAGTGGCAGGAACAAGAACGGCGGAGTACTGTGCAT
TCCACGCCCCGGACGAGATGGTCAAGTTCAGTCTAAATTGTGCCCGCCGA
GGGTGCAATAAACATACGCCGTTCGGAGGGGCTGGGGTGAGGCAGGTGAA
GTACTGTGCACATCACACTAGGCCCACACGCGGCGTCGGGGGATACGGGA
GGCGAGAGATTGGTCCCCACCGCTCCGGGAAGGAAACCATTGGTGACCCA
TGTTCGAGTGGCGTAAAACGGAAAACCATTCATCCTTATACCGCCCAGGC
AAGCCCCCTATCGGGTGGTAGCGGGGGTTCTCGTAAGCGGGTACCACTCC
CAGACATGACATCTACGGCTTTGAAGCGAGCAATTGCTCAGCAGTCGGCT
GCAGGAGCGGTGACTTTGCCGTGGAGCGACGGACAAAAATCTCCCATCAA
GCGAGATTCTTATTTGAAGACGGAACTGCAGCTGTCGTTGTAGTCAGGTA
CAGCATGCCCGTAAGCCGGTCAGGCTTAGTATCAGTTAGTTATAACTTTT
CCGGCGACCGAAGCTCATTTATTGGATTTTGCATTTGTTCGGAGTGAAGA
GGTATCCCCGCCCCGTCCCGCCTTGTTTATGGTTCTTCTTTCTGTTTCAT
TCCAAGGCGGTGAGCTCAGCTAAGGTATCTCTGCTCCTCGTTGACCCTCA
AGACCTAGTAGTTGCAGCCAGCGGAGAAGAAAACACCCTACTTGTGCTTA
ACACGCCCTTGTTCTATCGTTCTCCCGTCTTTCGAACTCAGGTACTGTGG
TGAAGAACGCGGTAATGGTTTCAAAACTGTAGCCGCTGAGACGCTGCTAG
GTCTGGTGAGGGTCCTACAATGTTTACCTCCGGAAAAAGGTTTTGCAGTT
TCCGTTGATTTATCCACATAGCGTCGAGTTCTTTATTTCACACTGGTACT
TTTTTAGTTGTTCCCATCCTAGGCATGTATACACTGTCCCATCCTTGAAT
TGCCGGTACTGTACCGTAGAAGTGATGCTGTCGCGACAAAGAAGTTGGTG
TCATCCGCGAATGTGTACTCGTGTGACAAATCCATAGGTATATAGATGTC
TCTAGTTTAGCTACTAAACCGCCTATGATATCGTTCGCGTTGCAACTTTT
TCATTGTTCGTCCTTTTATAAGCTGTTGCCAATAATGTTGCTGGTCATCA
ACTTCAGCGGAAGACTGGGCATGACAGGGTCTGGTTGCTAATCCTACTTG
TGGTCAGACGAACAGTAAAACATTAATTTGGCCTGTCCCTACTACAGTAG
AGCTATTGGCTTTAGGGTTGAGTTGACAGAAATATACGGGCTCAGTATGA
CGTTGCCCGATTATGTATAATAGGACGCTGTTGATGTGCTTCGAGAAACC
TCTGGCCGCATCGAAACCTTCTAAGCGTCCACCTAGTCAGAGTGAAAATT
GTCAGAACGTTTAGGTGGGAACGTCGGCTTGCAAGGACAACAACTGTTAA
GAAGCTCAAGGTAGATATGTTGCGTGGATTGTTTTGAACATTTTTTTGGC
ATTCCTTTTGTATTTGATATCATGCAGTGCGGTTGGAGGTCGATCTTTAC
AACCTGAACAGTACCATGTTGGTAGTGTTTTGAGGCAATTGTCCCTTAAC
AAACCGACAGCGCACCACAAACCGACAGCCCATGACGTAGGATGAAATAT
AGTAAAAAGCCCATGTCAGGCATATGGAGCCCATCGGACGAATAGGCTGT
ATCTGAGGTCGAGATAAGCTATTATCAATGATCGTGGAGGCATCAACTGT
TGTTGAAACGAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig90:491980..496493+

>mRNA_A-nodosum_M_contig90.33.1 ID=mRNA_A-nodosum_M_contig90.33.1|Name=mRNA_A-nodosum_M_contig90.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2691bp|location=Sequence derived from alignment at A-nodosum_M_contig90:491980..496493+ (Ascophyllum nodosum dioecious)
ATGGTCGACGTGTCCTACAGCTACAGAAAGCGCAGAACCGAAGGCTGCGG
CAAGCGAACGACATTCGGAGCGACCGGCACCAGAATGACCGAGTACTGTA
CACGGGACACGAAGAGTGGGATGGGCGACGTGCGCAGAAAAAAGTGCATC
AACGAAGGATGTGGCAAGCGTTCGACGTTCGGAGTGGCCGGCACAAAAAT
GGCGAATTACTGTGCACAGCACGCAAAGAACGGGATGGTCGACGTCTGTA
GCAAAAAGTGCAAAACCGAAGGATGTGGCAAGCGACCATCGTTCGGAGTG
GCCGGCACCAGAGTGGTCGAGTACTGTGCACAGCACGCCCCGGACGGAAT
GGTCAACGTCCGCAGCAAAAAGTGCAGAACCGAAGGCTGCGGCAAGTGTG
CTTGGTTCGGAGTGGCCGGCACCAGAATGGTGGAGTACTGTGCACAGCAC
GCCCCGGACGAGATGGTCGACGTGTGCAGCAGAAAGTGTAGAACCGAAGG
CTGTAGCAAGCGATCGTCGTTCGGAGTGGCGGGAACAAGAACGGTGGAGT
ACTGTGCACAGCACTCGAAGAACGGGATGGTCAACGTGTGCAGCAGAAAG
TGCAGAACCGAAGGCTGCAGCAAGCGATCGTTGTTCCGAGTGGCGGGAAC
AAGAACGGTGGAGTACTGTGCACAGCACTCGAAGAACGGGATGTGCAAAA
CCGAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGGCCGGCACCAGAATG
ATGGAGTACTGTGCACATCACGCGAAGGATGGGATGGTCAACGTCCGCAG
CAGAAAGTGTAGAACAAAAGGTTGTGGCAAGTGTCCGGCGGTAGTCGGGA
CAAAAATGGCGGAGTACTGTGCACAGCACGCCCCGGACGGGATGGTCGAC
GTGTGCTACAGCTACAGAAAGCGCAGAACCGAAGGCTGCGGCAAGCGAAC
GACGTTCGGAGTGACCGGCACCAGAATGACGGAGTACTGTACACGGGACA
CGAAGGGCGGGATGGGCGACGTGTGCACCAAAAAGTGCAGAACCGAAGGG
TGTGGCAAGCGTTCGTCGTTCGGAGTGGCCGGCACAAAAATGGCGAACTA
CTGTGCACAGCACGCGAAGAACGGGATGGTCGACGTCTGTAGCAAAAAGT
GCAAAACCGAAGGATGTGGCAGGCGACCGTCGTTCGGAGTGGCCGGCACC
AGAATGGCGGAGTACTGTGCACAGCACGCCCCGGACGGAATGGTCAACGT
CCGCCGCAAAAAGTGCAGAACCGAAGGCTGCGGCAAGTGTGCGTCGTTCG
GAGTGGTCGGCACCAGAATGGTGGAGTACTGTGCACAGCACGCCCCGGAC
GAGATGGTCGACGTGTACAGCAGAAAGTGTAGAACCGAAGGCTGCAGCAA
GCGATCGTCGTTTGGAGTGGCGGGAACAAGAACGGTGGAGTACTGTGCAC
AGCACTCGAAGAACGGGATGGTCGACGTCTGCAGCAGAAAGTGCAAAACC
GAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGGCCGGCACAAAAATGGC
GAAATACTGTGCACAGCACGCGAAGAACGGGATGGTCGACGTCTGCAGCA
TAAAGTGCAAAACCGAAGGATGTGGCAAGCGACCGTCGTTCGGAGTGGCC
GGCACCAGAATGATGGAGTACTGTGCACATCACGCGAAGAATGGGATGGT
CAACGTCCGCAACAGAAAGTGTAGAACCAGAGGCTGCGGCAAGTGTCCGT
CGTTCGGAGTGGCCGGCACCAAAATGGCGGAGTACTGTGCACAGCACGCG
AAGAACGGAATGGTCGACGTGTGCAGCAGAAAGTGCACAGACGATAGCTG
CAGCAAGCGATCGTCGTTCGGAGTAGCCGGAACAAAAATAACAAATTACT
GTGCACAGCACGCGAAGAGCGGGATGGTCGACGTCTGCAGCAAAAAGTGC
AAAACCGAAGGATGTGGGAGGCGACCGTCGTTCGGAGTGGCCGGCACCAG
AATGGTGGAGTACTGTGCACAGCACGCCCCGGATGGGATGGTCAACGTCC
GCAGCAGAAAGGGCAGAACCGAAGGCTGCGGCAAGTACCCGTCGTTCGGA
GTGGCCGGCACCAGAATGGTGGAATATTGTGCACAGCATGCGAAGAACGG
GATGGCTGACGTGTGCAGCAAAAAGTACAGAACCGAAGGCTGCGGCAAGC
AACCGTCGTTCGGAGTGGCAGGAACAAGAACGGCGGAGTACTGTGCATTC
CACGCCCCGGACGAGATGGTCAAGTTCAGTCTAAATTGTGCCCGCCGAGG
GTGCAATAAACATACGCCGTTCGGAGGGGCTGGGGTGAGGCAGGTGAAGT
ACTGTGCACATCACACTAGGCCCACACGCGGCGTCGGGGGATACGGGAGG
CGAGAGATTGGTCCCCACCGCTCCGGGAAGGAAACCATTGGTGACCCATG
TTCGAGTGGCGTAAAACGGAAAACCATTCATCCTTATACCGCCCAGGCAA
GCCCCCTATCGGGTGGTAGCGGGGGTTCTCGTAAGCGGGTACCACTCCCA
GACATGACATCTACGGCTTTGAAGCGAGCAATTGCTCAGCAGTCGGCTGC
AGGAGCGGTGACTTTGCCGTGGAGCGACGGACAAAAATCTCCCATCAAGC
GAGATTCTTATTTGAAGACGGAACTGCAGCTGTCGTTGTAG
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