mRNA_A-nodosum_M_contig9.100.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9.100.1
Unique NamemRNA_A-nodosum_M_contig9.100.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9contigA-nodosum_M_contig9:1779006..1779436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size364
Hectar predicted targeting categoryother localisation
Exons3
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870338.4135764-CDS-A-nodosum_M_contig9:1779007..17792961680870338.4135764-CDS-A-nodosum_M_contig9:1779007..1779296Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 1779008..1779296 -
1680870338.4292226-CDS-A-nodosum_M_contig9:1779356..17793981680870338.4292226-CDS-A-nodosum_M_contig9:1779356..1779398Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 1779357..1779398 -
1680870338.4407017-CDS-A-nodosum_M_contig9:1779407..17794361680870338.4407017-CDS-A-nodosum_M_contig9:1779407..1779436Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9 1779408..1779436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9.100.1prot_A-nodosum_M_contig9.100.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9 1779008..1779436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9.100.1

>prot_A-nodosum_M_contig9.100.1 ID=prot_A-nodosum_M_contig9.100.1|Name=mRNA_A-nodosum_M_contig9.100.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
EAKKRENEAKLRRERSVGTSFDGLTRGVSAAVGLRQSLPNFSRGIVPKFP
VECSPSEYIAWERRFEVFIAAQGLRHAISPDAPEIAVISCTNNAYLFGQF
GEDLVTNHRRVWGYISEATA
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mRNA from alignment at A-nodosum_M_contig9:1779006..1779436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9.100.1 ID=mRNA_A-nodosum_M_contig9.100.1|Name=mRNA_A-nodosum_M_contig9.100.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=431bp|location=Sequence derived from alignment at A-nodosum_M_contig9:1779006..1779436- (Ascophyllum nodosum dioecious)
GAAGCAAAAAAACGGGAAAATGAGGCAAAGTTGGACAGGCTTCGGAGGGA
AAGGTCGGTGGGCACATCCTTCGACGGGCTAGGTGGTGGTAATTCATCTG
ATCGTCGAGGAACCGCTGCTTCGACTATGGGTCCCATGTGGACACGTGGG
GTAAGTGCCGCTGTTGGTTTAAGGCAAAGTTTGCCGAATTTTTCTCGGGG
TATTGTACCGAAATTCCCCGTGGAATGTTCTCCCTCCGAATATATTGCTT
GGGAGCGACGCTTTGAGGTCTTTATAGCAGCCCAGGGCCTGCGTCACGCT
ATCTCCCCTGACGCTCCTGAAATAGCTGTAATCAGCTGCACAAACAACGC
ATACCTCTTTGGCCAGTTTGGCGAGGACCTTGTCACGAACCACAGACGGG
TATGGGGGTACATTTCCGAAGCGACTGCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9:1779006..1779436-

>mRNA_A-nodosum_M_contig9.100.1 ID=mRNA_A-nodosum_M_contig9.100.1|Name=mRNA_A-nodosum_M_contig9.100.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig9:1779006..1779436- (Ascophyllum nodosum dioecious)
GAAGCAAAAAAACGGGAAAATGAGGCAAAGCTTCGGAGGGAAAGGTCGGT
GGGCACATCCTTCGACGGGCTGACACGTGGGGTAAGTGCCGCTGTTGGTT
TAAGGCAAAGTTTGCCGAATTTTTCTCGGGGTATTGTACCGAAATTCCCC
GTGGAATGTTCTCCCTCCGAATATATTGCTTGGGAGCGACGCTTTGAGGT
CTTTATAGCAGCCCAGGGCCTGCGTCACGCTATCTCCCCTGACGCTCCTG
AAATAGCTGTAATCAGCTGCACAAACAACGCATACCTCTTTGGCCAGTTT
GGCGAGGACCTTGTCACGAACCACAGACGGGTATGGGGGTACATTTCCGA
AGCGACTGCT
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