prot_A-nodosum_M_contig897.17.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig897.17.1
Unique Nameprot_A-nodosum_M_contig897.17.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length142
Homology
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BLAST of mRNA_A-nodosum_M_contig897.17.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.860e-11
Identity = 60/167 (35.93%), Postives = 86/167 (51.50%), Query Frame = 0 
Query:    7 LQEATNEELMSMLRHQSARLQKFEEEYNRLLKS-----------KATSRDCGQVAQRD-------------------LERSQEECQLAKDNARELAERYTALQEKFRTMEGSAGGGHRGADNNKLVERMKGLIGKYKEAQGTIRSLQSQVKELRAHRVA-MSPEGDG 142
            LQ+ATN+ELMS++RH S+RL+  EEEY++L +            + T ++     Q+                    LER+ EE + A++  +E+A+RY+ALQEKFR  EG                    LI KYKEAQG I+ LQ QV+EL+ H+      +GDG
Sbjct:   38 LQDATNDELMSLVRHHSSRLKIVEEEYSKLKQKYIGTFNEHADQQKTVQELRLAMQQQATXXXXXXXXXXXXXXXQQLERAFEERKAAQEGVKEMAKRYSALQEKFR-QEGVV------------------LIAKYKEAQGVIKGLQEQVQELQDHKPPDADADGDG 185
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE5.860e-1135.93GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
NoneNo IPR availableCOILSCoilCoilcoord: 12..39
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 48..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:129706..132628 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.17.1mRNA_A-nodosum_M_contig897.17.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig897 129704..132628 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig897.17.1 ID=prot_A-nodosum_M_contig897.17.1|Name=mRNA_A-nodosum_M_contig897.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=142bp
TLNPNELQEATNEELMSMLRHQSARLQKFEEEYNRLLKSKATSRDCGQVA
QRDLERSQEECQLAKDNARELAERYTALQEKFRTMEGSAGGGHRGADNNK
LVERMKGLIGKYKEAQGTIRSLQSQVKELRAHRVAMSPEGDG
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