mRNA_A-nodosum_M_contig897.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig897.17.1
Unique NamemRNA_A-nodosum_M_contig897.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig897.17.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.860e-11
Identity = 60/167 (35.93%), Postives = 86/167 (51.50%), Query Frame = 1 
Query:   19 LQEATNEELMSMLRHQSARLQKFEEEYNRLLKS-----------KATSRDCGQVAQRD-------------------LERSQEECQLAKDNARELAERYTALQEKFRTMEGSAGGGHRGADNNKLVERMKGLIGKYKEAQGTIRSLQSQVKELRAHRVA-MSPEGDG 426
            LQ+ATN+ELMS++RH S+RL+  EEEY++L +            + T ++     Q+                    LER+ EE + A++  +E+A+RY+ALQEKFR  EG                    LI KYKEAQG I+ LQ QV+EL+ H+      +GDG
Sbjct:   38 LQDATNDELMSLVRHHSSRLKIVEEEYSKLKQKYIGTFNEHADQQKTVQELRLAMQQQATXXXXXXXXXXXXXXXQQLERAFEERKAAQEGVKEMAKRYSALQEKFR-QEGVV------------------LIAKYKEAQGVIKGLQEQVQELQDHKPPDADADGDG 185
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig897.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2N6_9PHAE5.860e-1135.93GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig897contigA-nodosum_M_contig897:129704..132628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size428
Hectar predicted targeting categoryother localisation
Exons4
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870328.4410021-CDS-A-nodosum_M_contig897:129705..1298131680870328.4410021-CDS-A-nodosum_M_contig897:129705..129813Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 129706..129813 -
1680870328.451765-CDS-A-nodosum_M_contig897:130563..1306331680870328.451765-CDS-A-nodosum_M_contig897:130563..130633Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 130564..130633 -
1680870328.4626243-CDS-A-nodosum_M_contig897:131163..1312911680870328.4626243-CDS-A-nodosum_M_contig897:131163..131291Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 131164..131291 -
1680870328.4799721-CDS-A-nodosum_M_contig897:132508..1326281680870328.4799721-CDS-A-nodosum_M_contig897:132508..132628Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig897 132509..132628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig897.17.1prot_A-nodosum_M_contig897.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig897 129706..132628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig897.17.1

>prot_A-nodosum_M_contig897.17.1 ID=prot_A-nodosum_M_contig897.17.1|Name=mRNA_A-nodosum_M_contig897.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=142bp
TLNPNELQEATNEELMSMLRHQSARLQKFEEEYNRLLKSKATSRDCGQVA
QRDLERSQEECQLAKDNARELAERYTALQEKFRTMEGSAGGGHRGADNNK
LVERMKGLIGKYKEAQGTIRSLQSQVKELRAHRVAMSPEGDG
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mRNA from alignment at A-nodosum_M_contig897:129704..132628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig897.17.1 ID=mRNA_A-nodosum_M_contig897.17.1|Name=mRNA_A-nodosum_M_contig897.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2925bp|location=Sequence derived from alignment at A-nodosum_M_contig897:129704..132628- (Ascophyllum nodosum dioecious)
ACCCTGAACCCGAACGAGCTGCAAGAGGCCACGAACGAGGAGCTCATGAG
TATGTTGAGGCATCAGTCCGCGAGGCTCCAAAAATTCGAAGAGGAGTACA
ACAGGCTCCTCAAGTCCAAGGTATTTGAACTAAAAAACAATAATAGTTCC
TATATTGTGTAAAGTAGTTTTGGTACAGTTTTTGGTCGTGTGCCGTGATG
GATACAAAACACACTGAGAGCAAACGGCCAAAACTATACGACGAACAAAG
TGTTCAGTGTTTTCTTATTGGAGGGGGGGGGGAATTGGAGCGGTTTTTAT
TGAAAATATTTCCCTCTCAACCAATGTGTAGTCTTTTTCCAAGACGCAGC
TTGTGCGACGCCGGGACGTAAAATTGTTTGTGGGCAGACGAGACTCCGGC
GCCCCCACGCAGGCGGCGCCACACTTCGCCACTCCCCGGGATCCTACACC
TGCCCTTCTGATAAACAGCGATCTACACCTTCCTCTCCCCCCCCCCCGCA
TACATGAAAACGGACATATTGACATTGCCCGTTCGCCTCTCATTCGTTAC
ACAAACAAGTAGGTACATTGGAGCGTTCATTGAGTACGCTGACCAGCAGC
AGAGAGTATACTCTTCGGTCGTAGCCTCACCGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGGTATTTATTAATTTGCACATAACCGCGCAAATGTGTGTG
TGTGTCTTGGTTTGGTGTCGTGGTACGGCGGTCTTTGCCCCCTTCCTCAC
CCCTTCCCATTCTCCTCTATTTATGTAATGTTTCGTGGTGACCAAGCTTG
GCTGGCAACCAAAACAAAAGTTGGCAAGGGACCGCTTGCGTTTGGCCCCG
TGACCGGGGCACGTCTTAGACTGGACGTACTTAGAATAGTTTTGCCCCCG
CGAGTCACGGGGAACGGGCCAGGTGAATGGAGTCACAGACGATCCATGTA
CGTGGTATTATCGCGATCGTGCTCACGGCTGTGTTTCCCTCCTTACTCTA
AACAAATGTTTGTTCGCCTTGAGGAAAGAAGAAAAAGAAGAAACAACAAC
GGACAGCTCTTGCTTTTCGTCGTTGATCACCAAAAATATTGATGTCTTTG
CTCCCTCTGCCTCGTCACACGGAACACTCAACCCAAGTCTATCCCACCCC
TTTCTTTGGTTGTAATCGAACGCAAAAATAGTGTAATATCTCTATTGTTA
ATGGTATAAATGACCATCACGACACCAACACCGACTTAGTTGGCACAAAC
TATTTCCACGTGTGCTATATTCTCCCGGTGAAGGCTCCTTCCTCCACCCC
CAACCCCTTATCCCTGTTGATCTCCGTTGCCCTGTAGGCAACCTCTCGAG
ATTGTGGTCAGGTCGCACAGCGAGACCTCGAGCGCTCCCAAGAGGAATGC
CAGCTGGCGAAAGACAACGCCAGAGAGCTGGCCGAGCGGTACACAGCCCT
GCAAGAGAAGTTTAGGCAAGTGGCAACGTCGCACTTGCGCACGCTTACGG
GACTTCGGAGGCCAGGGAACCAAGACGCGACTTGTGTTTGTGTTCCTTTA
TAAGCATCATCTTGACATGGTTGAGAGGGGTATGCGAGTGTGCGCTCGGT
TTCCTACGAAATAGCGTGGGTATTTTGCCCCAAAGTCTCGGGCAAAGACA
ACATAAGACTCTCATGCTTCTTGGGAGACCTAGGCGTTGGTGTGATTTTT
CACTGTTATCTGCACATGCGTAAATGTTTGTAACCGTCTGCGGCGTGGAT
CGGGTCTCGCGCGTTTTTTATTTATTTTACCGCCCACGCTTCTCTACAAA
GTACAACACCGAGCGGAGGGGTTGTTGGGGGGTTCGGAGCAAAACACGGT
CCTCACTGTAGCCTTAGCAAAAATCTTTGACGGACGCCCATTCTTGACCG
AGGGATATGATGCCTCGCCTCGTCGATTTTGGTGTGTGATATTTCTCGAC
TGCCTTGTGTTTGTCCCGCGATGCCCCGTTTGTCTGTTTCGATAGAACAA
TGGAAGGCAGCGCCGGGGGCGGGCATCGTGGCGCGGACAACAACAAGCTC
GTCGAAAGGATGAAGGTAAGCGCCTTGACCCTTAGATCTTGCCCGTCTGT
CTCATTGGCCGTGTCTGGCTCCTACCCCTGCCTTCTTGAGCCTCGCTCCG
TCGGTGAGAGAGGGTGTGCGTTTTGAGCGCTTTAGACCCGAGACGACCCA
CTCGTCGCTAGGAATGGAGGGGCGAGCGACCCGCGTCGATGCTCGCGTAT
TTTACTCATGCGCCCCCTCCCCCCGGCCATCTCCTCCGTGTGTTCTAATC
GGGTCACGGCCCTCTTGCTCTCTTGATACCACGAGTACGTTTCGTATTAC
CTTTTGCGGTAACTTTTGCAGTACCTTTGGTCGTGCATACAAGCTATGAA
AGACATGTAGGTATGAACTGTGGCCGCCGCCTTGGGAGGGTCTTGAATCC
TACCTGGTAATTTTTTCTAACGCACAACAAAAGTAATGAGGGTTCGGACA
GCAGTCCGTGTTTGTTTCGTCGCGAAACCATCTCAAAACACTCGCGCAGA
CAGGAGACGCTCACCTTCCCACCCGCGCACCCCCGACCGCCGGGTGGACT
GTCGAGCGAACTGACTCCTATTGTGTCTGCTTTCCTACCTTCCTCGCGGG
TTGTCTCTCGTGCCCCACCCGACACGCGTCCTTCCCTTGAAGACATGGAT
GAAACGATTCGCTGGTGTACATGTGTACATGATGTATGTGTGTGTTGTGG
TCCATCCCCTTTCCTTAACGCCTCCGCATGACGAATCTCGACGGCCGGCC
TGATGGCTTATCCAGGGCCTGATCGGGAAGTACAAAGAAGCGCAAGGCAC
CATCAGATCGCTCCAGAGCCAGGTGAAGGAGCTTCGGGCGCACAGGGTCG
CGATGTCGCCGGAAGGGGACGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig897:129704..132628-

>mRNA_A-nodosum_M_contig897.17.1 ID=mRNA_A-nodosum_M_contig897.17.1|Name=mRNA_A-nodosum_M_contig897.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at A-nodosum_M_contig897:129704..132628- (Ascophyllum nodosum dioecious)
ACCCTGAACCCGAACGAGCTGCAAGAGGCCACGAACGAGGAGCTCATGAG
TATGTTGAGGCATCAGTCCGCGAGGCTCCAAAAATTCGAAGAGGAGTACA
ACAGGCTCCTCAAGTCCAAGGCAACCTCTCGAGATTGTGGTCAGGTCGCA
CAGCGAGACCTCGAGCGCTCCCAAGAGGAATGCCAGCTGGCGAAAGACAA
CGCCAGAGAGCTGGCCGAGCGGTACACAGCCCTGCAAGAGAAGTTTAGAA
CAATGGAAGGCAGCGCCGGGGGCGGGCATCGTGGCGCGGACAACAACAAG
CTCGTCGAAAGGATGAAGGGCCTGATCGGGAAGTACAAAGAAGCGCAAGG
CACCATCAGATCGCTCCAGAGCCAGGTGAAGGAGCTTCGGGCGCACAGGG
TCGCGATGTCGCCGGAAGGGGACGGT
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