prot_A-nodosum_M_contig896.21.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig896.21.1
Unique Nameprot_A-nodosum_M_contig896.21.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length486
Homology
BLAST of mRNA_A-nodosum_M_contig896.21.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 3.600e-124
Identity = 195/324 (60.19%), Postives = 243/324 (75.00%), Query Frame = 0
Query:  148 RRGRGAISTVAVTLASSDANEKSLPVEGRIQEVSEKVLPGSRPSKGAENQDEAAIKYANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKELFFDYATALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFALLLMMREDGVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKTGHAEMATMMFEMALEENVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIKPQVMDLLTALGLEPKLMRNNEGCIVLQSDALQGYVTR 471
            R GRG  + V+   A +D++E    V  +  E    + PG+   +GAE QDEAA++YA  GDW+K++QLIKAMRD D  PSV AYVATIEACRK   +D+A+ LL DM +VC+PEDL   +A  HPN   VTQT++VF L +MMR+D + P +ETYRAIMGL SKE LW +SLLL++HL+R+GLVPGKFV+DEIC+VLFKTGH EMATM+FE AL + +  EE    +   LDLHNHT STALAAVR+ LLDM RKPA R +HDP + L ++TGMGNNSKDGEAVIKP+VM+LL+ +GLEP +MRNNEGCIVLQ   LQ Y+ R
Sbjct:  110 RAGRGG-ALVSPLSAKADSDESG--VMDKKAEFYGNLAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKI--EELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMAR 428          
BLAST of mRNA_A-nodosum_M_contig896.21.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.490e-73
Identity = 138/341 (40.47%), Postives = 200/341 (58.65%), Query Frame = 0
Query:  171 LPVEGRIQEVSEKVLPGSRPSKGAENQDEAAIKYANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKELFFDYATALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFAL---------------LLMMREDGVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKTGHAEMATMMFEMALEENVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIKPQVMDLLTALGLEPK-----------------LMRNNEGCIVLQSDALQGYVTRLTSGANKT 479
            +   G++ + S  V PG+  +      ++A  KYA+ G+W KA+ LI  MR+ +L PS+ AY  TI A R+ L FD A ALL DM+  CMP DLFA++A   P+DA  TQT+ VFAL               LL MR D + P  +TYRA+MG+C+K+ LWHLSLLLL+H+R  G+ PGKF+++EICTVL   G  ++A +++E +L E V   E     +  +DLH+ T +TA AAVR AL DM+R+P+GR +HDP  P+ ++TG+G  S++G AVIKP ++D+L      P                  + ++N GC+ +Q   LQ +     +    T
Sbjct:    1 MAARGQVADAS--VPPGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQLEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYERSLGEGVF--EPWIEDDNKVDLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWARARLAAVGAT 337          
BLAST of mRNA_A-nodosum_M_contig896.21.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.040e-48
Identity = 99/296 (33.45%), Postives = 163/296 (55.07%), Query Frame = 0
Query:  205 ANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKELFFDYATALLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFALLLMMRED-GVSPVQETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKTGHAEMATMMFEMAL-EENVSGEETTG---------------------VSNGLLDLHNHTASTALAAVRIALLDMVRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIKPQVMDLLTALGLEPKLMRNNEGCIVLQSDALQGYVTRLTSGAN 477
            + +GDW+ AL++++ +RD  +KPS++ ++  I  CR+ L +D A+   R+M    + +  F + A     D       R   ++  M+ D G+ P   TYRA++ LC  EG W  ++LLL+H RRS      F +D + T + K G+ E++TM++E+ + + + +  ET G                         +L+LH+ T   AL  V++ALLD++R+P  R Y    +   ++TGMGNNSKD EA+IKP V++LL  LGL P+  + NEGC+ L+   L+ Y+ R  + A+
Sbjct:    2 SREGDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKAS 297          
BLAST of mRNA_A-nodosum_M_contig896.21.1 vs. uniprot
Match: A0A812T8Y8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T8Y8_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 2.490e-9
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 0
Query:  303 YRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKTGHAEMATMMFEMALEENVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDMV--------RKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIKPQVMDLLTA-LGLEPKLMRNNEGCIVL 460
            + A +  C     W  +L L++ ++  GL P   +WD++   +  +G  EMA  M      + + G          LDLH  T   A  AVRIALLD+          K A  G       LS+V G+G  SK GEA++ P +  +L+  LG++      NEGC+++
Sbjct:   69 FDAAISSCCHARQWQHALRLVEDMQDDGLAPDTGIWDKLLEAMVLSG--EMAAAMALCREAKALLGLRPAAQG---LDLHGKTVELAKLAVRIALLDVALALQHGQAAKSAELGL-TAQGSLSLVVGLGRQSKTGEAILGPAIQQMLSQELGVQSHKDPKNEGCLLI 229          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig896.21.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4I1_ECTSI3.600e-12460.19Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
A0A835YUL6_9STRA1.490e-7340.47Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G4J1_ECTSI2.040e-4833.45Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A812T8Y8_9DINO2.490e-930.54Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 376..463
e-value: 7.7E-6
score: 35.4
IPR002625Smr domainPFAMPF01713Smrcoord: 379..443
e-value: 3.0E-6
score: 27.5
IPR002625Smr domainPROSITEPS50828SMRcoord: 379..463
score: 12.872198
IPR036063Smr domain superfamilyGENE3D3.30.1370.110coord: 378..461
e-value: 4.9E-11
score: 44.7
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 378..458
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 203..267
e-value: 5.4E-6
score: 28.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 269..365
e-value: 7.9E-6
score: 27.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 302..331
e-value: 0.74
score: 10.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 299..333
score: 8.659485
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 204..363

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig896contigA-nodosum_M_contig896:259444..283706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig896.21.1mRNA_A-nodosum_M_contig896.21.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig896 259434..284077 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig896.21.1 ID=prot_A-nodosum_M_contig896.21.1|Name=mRNA_A-nodosum_M_contig896.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=486bp
MSSMTPAWRGSNRNGVMRRLLWLCACLLVAKAGCVATAAAYDRNELISYI
RCNAWRVRGCCGSSRGYRTTVPKRVRSTHDHHQRRSGERHHSWGRNDLRF
HWRRDDIILAGMTVALSVTAAAVADFSSKDTFRREAPRLALVSWRRGRRG
RGAISTVAVTLASSDANEKSLPVEGRIQEVSEKVLPGSRPSKGAENQDEA
AIKYANDGDWKKALQLIKAMRDGDLKPSVTAYVATIEACRKELFFDYATA
LLRDMFRVCMPEDLFAEFAPNHPNDAEVTQTERVFALLLMMREDGVSPVQ
ETYRAIMGLCSKEGLWHLSLLLLDHLRRSGLVPGKFVWDEICTVLFKTGH
AEMATMMFEMALEENVSGEETTGVSNGLLDLHNHTASTALAAVRIALLDM
VRKPAGRGYHDPMRPLSVVTGMGNNSKDGEAVIKPQVMDLLTALGLEPKL
MRNNEGCIVLQSDALQGYVTRLTSGANKTENGPKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002625Smr_dom
IPR036063Smr_dom_sf
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat