mRNA_A-nodosum_M_contig895.56.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig895.56.1
Unique NamemRNA_A-nodosum_M_contig895.56.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig895.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig895contigA-nodosum_M_contig895:282701..283502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size244
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870322.759447-CDS-A-nodosum_M_contig895:282700..2828651680870322.759447-CDS-A-nodosum_M_contig895:282700..282865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig895 282701..282865 -
1680870322.7699883-CDS-A-nodosum_M_contig895:283423..2834861680870322.7699883-CDS-A-nodosum_M_contig895:283423..283486Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig895 283424..283486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870322.783453-UTR-A-nodosum_M_contig895:283486..2835021680870322.783453-UTR-A-nodosum_M_contig895:283486..283502Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig895 283487..283502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig895.56.1prot_A-nodosum_M_contig895.56.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig895 282701..283486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig895.56.1

>prot_A-nodosum_M_contig895.56.1 ID=prot_A-nodosum_M_contig895.56.1|Name=mRNA_A-nodosum_M_contig895.56.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
MWVETVTEGGRRLMAAWRKEEGKPCAQFEHRKRRLGRPPSMKRGLHAFQG
GHRRHGRFGTPEEEKGGAGKQLPES*
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mRNA from alignment at A-nodosum_M_contig895:282701..283502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig895.56.1 ID=mRNA_A-nodosum_M_contig895.56.1|Name=mRNA_A-nodosum_M_contig895.56.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=802bp|location=Sequence derived from alignment at A-nodosum_M_contig895:282701..283502- (Ascophyllum nodosum dioecious)
TCTGAAGCGCGTATGTATGTGGGTTGAGACGGTCACGGAGGGTGGACGGA
GACTCATGGCCGCGTGGAGGAAAGAAGAGGTAGACGCGGCTAGATATCGC
CAGGAGAGAAGAGAGAGGCAACGAGACTGAGAAAGTTGTTCTCGCACACG
GAAGCGTAGAATTTTGCGAAGCGACACTCATTGGCCTAGTCGACGAGTCG
AAGGAATCCTTGTACAAACGCGAGACGGACCGAGACCTGCGTAGCGCCTA
GGCATGTAGATACGTGACGTGATTTTTATTATATTTTCTCCGAACGAGCA
GCGTGTGGGGGGGGGGGTATGCTGCCATACTTTTTATTTGGTTCTCTTTT
CCCTGTTCAGCAGACCACGAGCGGAATTGGCCACCGTCTAAAGTAGTTTT
TTCGGGTTGGCAACCAATACGCTGAATGCGAGAAACAACAACAACTGCCA
TACTCAAGCTTTGAAATCGTTTCTAAACACGGAGACTTTTTAGAGCTCCG
CGTAGACTATAATACATGGATCATCCCTTCCAATCCTTTTTAATATATGT
ATGTCTTTATGTCATGGCTCAATCGCCTCGCCCCTCTGGTGACGTTTTCT
TTTACGTTCCTCTCTTTGCTCTCTGTTGTTTTGAAAGGGAAAACCATGTG
CACAGTTTGAGCATCGCAAGAGAAGGCTTGGGCGACCACCAAGCATGAAA
CGTGGCCTCCACGCGTTTCAAGGCGGACATAGGCGTCATGGACGCTTTGG
TACACCTGAGGAAGAAAAGGGGGGCGCGGGGAAGCAACTGCCGGAGAGTT
AG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig895:282701..283502-

>mRNA_A-nodosum_M_contig895.56.1 ID=mRNA_A-nodosum_M_contig895.56.1|Name=mRNA_A-nodosum_M_contig895.56.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig895:282701..283502- (Ascophyllum nodosum dioecious)
ATGTGGGTTGAGACGGTCACGGAGGGTGGACGGAGACTCATGGCCGCGTG
GAGGAAAGAAGAGGGAAAACCATGTGCACAGTTTGAGCATCGCAAGAGAA
GGCTTGGGCGACCACCAAGCATGAAACGTGGCCTCCACGCGTTTCAAGGC
GGACATAGGCGTCATGGACGCTTTGGTACACCTGAGGAAGAAAAGGGGGG
CGCGGGGAAGCAACTGCCGGAGAGTTAG
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