mRNA_A-nodosum_M_contig892.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig892.13.1
Unique NamemRNA_A-nodosum_M_contig892.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.470e-14
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  886 ALPSLVKLVQHLVMPLELRLLHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLN 1119
            AL SLV  VQ + +PL LR+  Y  +  G E++   + DYC+T+ IIQ FSSP+T +QN +SERDGRTIM++ARC++N
Sbjct:  342 ALSSLVNYVQDVAIPLGLRV-QYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIIN 418
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.380e-13
Identity = 35/85 (41.18%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  877 EDKALPSLVKLVQHLVMPLELRLLHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            +D+A+ +L + +Q +V+P   RL    R+  G E+ ++YY D+CKT  I+Q F++P T +QN +SER GRT+M++ RC+++G K+
Sbjct:   87 KDEAINTLDRFIQDIVIPNGFRLERL-RSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKL 170
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.280e-11
Identity = 34/85 (40.00%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  877 EDKALPSLVKLVQHLVMPLELRLLHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            +D+A+ +L + +  +V+P   RL    R+  G E+ A+YY  +CKT  I+Q F++P T +QN +SER GRT+M++ RC+L+G ++
Sbjct:  569 KDEAIDTLERFIDDIVIPNGFRLERL-RSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQL 652
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.440e-11
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:  877 EDKALPSLVKLVQHLVMPLELRLLHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSL-SERDGRTIMDVARCMLNGAKV 1131
            +D+A+ +L + +Q +V+P   RL    R   G E+ ++YY D+CKT  I+Q F+ P T +QN + SER GRT+M++ RC+++G K+
Sbjct:   73 KDEAINTLDRFIQDIVIPNGFRLERL-RNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQQNGIISERAGRTLMNIVRCLMHGGKL 157
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.790e-10
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  877 EDKALPSLVKLVQHLVMPLELRL--LHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            +D+AL   V   Q + +P  LR+  LH   +    E++   + +YCKT+  +QTF+SP+T +QN +SERDGRTI+++ RC+LN A++
Sbjct:  273 KDEALLPFVNFTQDVAIPSGLRIQRLH---SDNRKEYVNSAFRNYCKTTGAVQTFTSPHTPQQNGISERDGRTILNMTRCILNEARL 356
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A6H5JBI9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.480e-7
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query: 1000 DYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            +YCKT+ ++QTF+SP+T  QN +SERDGRTI ++ RC+LN A++
Sbjct:  299 NYCKTTGVVQTFTSPHTPHQNGISERDGRTIPNMTRCILNEARL 342
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BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A0V0IT42_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IT42_SOLCH)

HSP 1 Score: 56.6 bits (135), Expect = 4.400e-5
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  946 LHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            L Y R+  G+E+ +  +  YCK   I Q F+   T +QN +SER  RT+M++ARCML   K+
Sbjct:   56 LKYIRSDNGTEYTSYQFSKYCKDLGIQQQFTVSYTPQQNGVSERKNRTVMEMARCMLAEKKM 117
[Close]
BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Match: A0A1U8GZG9_CAPAN (ABC-type xenobiotic transporter n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8GZG9_CAPAN)

HSP 1 Score: 57.8 bits (138), Expect = 6.740e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  946 LHY*RAGGGSEFIADYYCDYCKTSAIIQTFSSPNTAEQNSLSERDGRTIMDVARCMLNGAKV 1131
            L Y R+  G+E+    +  YCK   I Q F+   T EQN +SER  RT+M++ARCML   K+
Sbjct:   78 LKYIRSDNGTEYTLHQFSKYCKDVGIQQQFTVSYTPEQNGVSERKNRTVMEMARCMLAEKKM 139
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE8.470e-1452.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE9.380e-1341.18Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KY84_9PHAE2.280e-1140.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFB1_9PHAE8.440e-1140.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV56_9PHAE1.790e-1041.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBI9_9PHAE5.480e-756.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A0V0IT42_SOLCH4.400e-541.94Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A1U8GZG9_CAPAN6.740e-543.55ABC-type xenobiotic transporter n=1 Tax=Capsicum a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:196524..198328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1805
Hectar predicted targeting categoryother localisation
Exons1
Cds size921
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870317.289636-UTR-A-nodosum_M_contig892:196523..1974061680870317.289636-UTR-A-nodosum_M_contig892:196523..197406Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 196524..197406 -
1680870317.317169-UTR-A-nodosum_M_contig892:198327..1983281680870317.317169-UTR-A-nodosum_M_contig892:198327..198328Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 198328..198328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870317.3029456-CDS-A-nodosum_M_contig892:197406..1983271680870317.3029456-CDS-A-nodosum_M_contig892:197406..198327Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 197407..198327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.13.1prot_A-nodosum_M_contig892.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig892 197407..198327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig892.13.1

>prot_A-nodosum_M_contig892.13.1 ID=prot_A-nodosum_M_contig892.13.1|Name=mRNA_A-nodosum_M_contig892.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp
MAALQGANTIIAKEPYLDVGQFKIPLRKDTDYPTINYNLELATKGNHQTE
VAIPTRVISEHTIPTGSALASRTRRSGAMGAFTRFLPVTRPFIVTSTAAQ
DLPALRAIASAHGARLVSGGAMGAASALTVTMSFVAPTSAPGLTTATTTA
TPAMPATAMVAVRGKHLAAAPGTSERAQYAHCVEHRRDGSQFRRHSDRVR
HLQDQQGRYAHRVEHRRDRNHFRRHSDRVRHLQDQQGHQTASLQRAGQDR
DHGVASVRQHRPLGVVARGNYHFMVKYSNHCNKLEATYFISTRTRRCRVW
SNSYNT*
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mRNA from alignment at A-nodosum_M_contig892:196524..198328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig892.13.1 ID=mRNA_A-nodosum_M_contig892.13.1|Name=mRNA_A-nodosum_M_contig892.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1805bp|location=Sequence derived from alignment at A-nodosum_M_contig892:196524..198328- (Ascophyllum nodosum dioecious)
AATGGCTGCTCTTCAAGGAGCAAACACGATCATCGCCAAAGAACCATACT
TGGACGTTGGCCAATTCAAGATACCTCTACGTAAAGACACCGACTACCCT
ACAATAAACTACAACCTTGAACTTGCCACGAAGGGCAACCACCAAACGGA
AGTAGCAATCCCGACGAGGGTCATCTCGGAGCACACAATACCGACGGGGT
CGGCTCTAGCCTCCCGAACTCGTAGGAGCGGGGCCATGGGGGCGTTCACG
CGTTTTTTACCAGTGACACGGCCGTTTATCGTGACATCTACGGCGGCGCA
AGACCTACCGGCGCTACGGGCTATAGCTTCAGCTCATGGCGCGCGCCTGG
TCAGTGGTGGCGCCATGGGGGCGGCTTCGGCTCTCACAGTGACTATGTCT
TTCGTGGCACCCACGTCTGCGCCGGGACTGACAACTGCTACAACTACCGC
TACACCGGCGATGCCGGCAACTGCCATGGTGGCGGTGAGGGGCAAGCATC
TGGCAGCAGCGCCTGGGACATCCGAACGAGCGCAATATGCGCACTGCGTG
GAACATCGCCGAGACGGGAGTCAATTTCGCCGACACTCAGACCGCGTGCG
GCATCTGCAAGATCAACAAGGGCGCTATGCACACCGCGTGGAACATCGCC
GAGACCGGAATCATTTTCGCCGACACTCTGACCGCGTGCGGCATCTGCAA
GATCAACAAGGGCACCAAACAGCCAGTTTGCAACGAGCCGGACAAGACCG
AGATCACGGAGTGGCTTCAGTTCGTCAGCATCGACCTCTTGGGGTCGTGG
CGCGCGGGAACTACCACTTCATGGTCAAGTACTCCAACCACTGCAACAAG
TTAGAGGCGACCTACTTCATCTCGACGAGGACAAGGCGCTGCCGAGTCTG
GTCAAACTCGTACAACACTTAGTCATGCCTCTCGAACTTCGCCTCCTACA
CTACTAGCGTGCCGGTGGCGGCAGCGAGTTTATCGCCGACTACTACTGCG
ACTACTGCAAGACCTCGGCGATCATCCAGACGTTTAGCTCACCCAACACT
GCGGAGCAAAACAGCCTCAGTGAACGGGACGGGCGCACGATCATGGACGT
CGCCCGATGCATGCTAAACGGAGCCAAAGTCTCTCTAAGGGGAAATAATG
GAACGCGGTGTTTCTGCTAAACCGCCTGCCGAACAAGACCATCGGCGATG
ATACGGAGTACTACAGGATGTTCTGCAAACACGTCAACCTGTCATTTCTG
CGGACTATTGGGACCCGTCTACGTGGGGGCTGTCAAGCGTACTTTGTTCT
AACTTCGCGGCACACCACATGACCTACAATCACAACAGCAAAGACGCTTC
ATACGGCACCGACAACGCGGAGAAGGCGAGGTTTACACCAGGGAGAATAT
GCTTTCTCTCTGGATTAACCACTTCAGCCCCCACATATTTTGCGACAACA
AAGGGTCTTTGCTCCTAGCGGGGCAGGGCAGCTACATCAATCAAAGCAAG
CACCTCACGATCGGGTTCTTGAGGCTGCGCGACTGGACCATCGGTGATAA
GCTCGTCGTTGACCACGTTATAACCAAGGGGCAGTTGAGTGGTATCTACT
TTTCGAGGAGTTATTTCTTGGTGGACCGCCGAAAACCTCGATTGTCTTCC
CTTTCTTCCTTTCTCTTTTTCTTTCCGTAGTCCTTAAATCAACTTTTTCG
ATATAGGCTTCCATCGTAGGGGCGTGTTAGAACAACTGATGATGTCTAGC
CCTTGAGCTGTGTCTTATTTTAATTGTTGCCCGTATCGAGCTATTCTGTT
ATTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig892:196524..198328-

>mRNA_A-nodosum_M_contig892.13.1 ID=mRNA_A-nodosum_M_contig892.13.1|Name=mRNA_A-nodosum_M_contig892.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig892:196524..198328- (Ascophyllum nodosum dioecious)
ATGGCTGCTCTTCAAGGAGCAAACACGATCATCGCCAAAGAACCATACTT
GGACGTTGGCCAATTCAAGATACCTCTACGTAAAGACACCGACTACCCTA
CAATAAACTACAACCTTGAACTTGCCACGAAGGGCAACCACCAAACGGAA
GTAGCAATCCCGACGAGGGTCATCTCGGAGCACACAATACCGACGGGGTC
GGCTCTAGCCTCCCGAACTCGTAGGAGCGGGGCCATGGGGGCGTTCACGC
GTTTTTTACCAGTGACACGGCCGTTTATCGTGACATCTACGGCGGCGCAA
GACCTACCGGCGCTACGGGCTATAGCTTCAGCTCATGGCGCGCGCCTGGT
CAGTGGTGGCGCCATGGGGGCGGCTTCGGCTCTCACAGTGACTATGTCTT
TCGTGGCACCCACGTCTGCGCCGGGACTGACAACTGCTACAACTACCGCT
ACACCGGCGATGCCGGCAACTGCCATGGTGGCGGTGAGGGGCAAGCATCT
GGCAGCAGCGCCTGGGACATCCGAACGAGCGCAATATGCGCACTGCGTGG
AACATCGCCGAGACGGGAGTCAATTTCGCCGACACTCAGACCGCGTGCGG
CATCTGCAAGATCAACAAGGGCGCTATGCACACCGCGTGGAACATCGCCG
AGACCGGAATCATTTTCGCCGACACTCTGACCGCGTGCGGCATCTGCAAG
ATCAACAAGGGCACCAAACAGCCAGTTTGCAACGAGCCGGACAAGACCGA
GATCACGGAGTGGCTTCAGTTCGTCAGCATCGACCTCTTGGGGTCGTGGC
GCGCGGGAACTACCACTTCATGGTCAAGTACTCCAACCACTGCAACAAGT
TAGAGGCGACCTACTTCATCTCGACGAGGACAAGGCGCTGCCGAGTCTGG
TCAAACTCGTACAACACTTAG
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