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Homology
BLAST of mRNA_A-nodosum_M_contig89.29.5 vs. uniprot
Match: D8LBH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH1_ECTSI) HSP 1 Score: 298 bits (762), Expect = 3.880e-89 Identity = 227/534 (42.51%), Postives = 304/534 (56.93%), Query Frame = 1
Query: 412 SLAIVPYTGGRHLQAGCEMPGLRCRLFNLTSNDQRGIRFAPTSSPVTASTADILSSGGREVSSDLAETRSLKRGFNSSSSNSL--------RQKERPEWVVVSAEQAEHAARKLRSENEKNKTLQARLERHKRDRVLIYDAAMKQAAEREEEGVKDAKRMFERERLVMRAEVDHELLKINDLHEKRCRDYAQMVSDECEEEISKATAELREGWAREKKTIAQIVREGAEEDRQASAMPCVAVIARAVMEHLQEEKKDEVTALREEIYAEVKAEFENREVSMRDALQSEFQADLDGQLLLAEIRHQKEMDQLRTELRRDHAPSAEKADETIVVYSRGTTPKQRDRGDHGNDRXXXXXXXXXXXXXSLPRHSLQQKMPFRGARNGGNDG--GVAPAPAVRGKTGLVKKLPIFRTPAQKA-PASSDIKTTDMKSGRSNEPTAQLRPRIKRFSRSPKTGNIASVMPKPLDYVPQKHQDEDQNENEDDSITSALTVSPTKTSGIAVTPSMGVESTFIEKASTHEPQRPKKRGKRLFTAQ 1980
SLAI+PY+GG E P RLF L + + + ++ S + + R L E L G + +L +++ + +W++VS EQ E A K+R + EKNK L+ ++ HKR+RVLIYDAAMKQAA+RE EGV + K++ ER++ +MRAEVD E+ KI+DL+++RCRDYA MVSDEC+ E SKA +LR+ WAR+KKTI Q+VR G EEDRQ V+VIARAV+E LQEE++DE+ +LR IY++VK EFE+REV++RD L+S+FQADLDGQLLLAEIRHQKEM++LR EL P+ E IVVY+ TP+ RG + S R L KM A +GGN G GV RG T L +K P+F+TP QK P +S+ K K + T Q PR R + + +Q + D ITSAL VSPTK VTPS+G E + S+ RPKKR K+LF+ +
Sbjct: 3 SLAIIPYSGG----GAAEQPPCH-RLFTLLESSESDAQVLRGAALPHGSFGGLPRNTRR-----LEEGNVLPAGSGTQLGPALPPLNVEGGKERHQSKWMIVSKEQVEQTAEKMRDQAEKNKALETTVKIHKRERVLIYDAAMKQAAKRELEGVNEVKQVLERQQGMMRAEVDQEMQKISDLYQERCRDYATMVSDECDGEDSKAATDLRKDWARQKKTIDQLVRSGGEEDRQ------VSVIARAVVEQLQEERRDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTGEIVVYN-PETPQCAGRGQRSSGTSSFTPSP------SFSRRPLH-KMNISEA-SGGNSGADGVHVPTTPRG-TQLGRKFPVFKTPVQKQIPGASNKKAVRPKEHPVRDSTRQ--PRNSSVGRHTEISTTTPIR--------------EQEDELDVGITSALMVSPTKAIYGVVTPSIGSEGEVSGEGSS----RPKKRAKKLFSTE 490
BLAST of mRNA_A-nodosum_M_contig89.29.5 vs. uniprot
Match: A0A6H5KNT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT9_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.130e-83 Identity = 198/436 (45.41%), Postives = 265/436 (60.78%), Query Frame = 1
Query: 682 WVVVSAEQAEHAARKLRSENEKNKTLQARLERHKRDRVLIYDAAMKQAAEREEEGVKDAKRMFERERLVMRAEVDHELLKINDLHEKRCRDYAQMVSDECEEEISKATAELREGWAREKKTIAQIVREGAEEDRQASAMPCVAVIARAVMEHLQEEKKDEVTALREEIYAEVKAEFENREVSMRDALQSEFQADLDGQLLLAEIRHQKEMDQLRTELRRDHAPSAEKADETIVVYSRGTTPKQRDRGDHGNDRXXXXXXXXXXXXXSLPRHSLQQKMPFRGARNGGNDG-GVAPAPAVRGKTGLVKKLPIFRTPAQKA-PASSDIKTTDMKSGRSNEPTAQLRPRIKRFSRSPKTGNIASVMP--KPLDYVPQKHQDEDQNENEDDSITSALTVSPTKTSGIAVTPSMGVESTFIEKASTHEPQRPKKRGKRLFTA 1977
W++VS EQ E A+K+R + EKNK L+ ++ HKR+RVLIYDAAMKQAA+RE EGV + K++ ER++ +MRAEVD E+ KI+DL+++RCRDYA+MVSDEC+ E SKA +LR+ WAR+KKTI Q+VR EEDRQ SA IARAV+E LQEE+ DE+ +LR IY++VK EFE+REV++RD L+S+FQADLDGQLLLAEIRHQKEM++LR EL P+ E I+VY+ T G+ + RH + + G +GGN G G P T L +K P+F+TP QK P + K K ++ T R R S + + I+++ P + DY+ D ITSAL VSPTK VTPS+G E + S+ RPKKR K+LF++
Sbjct: 171 WMIVSKEQVEQTAKKMRDQAEKNKALETTVKSHKRERVLIYDAAMKQAAKRELEGVDEVKQVLERQQGMMRAEVDQEMRKISDLYQERCRDYARMVSDECDGEDSKAVTDLRKDWARQKKTIDQLVRSSREEDRQVSA------IARAVVEQLQEERSDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTSEIIVYNPETLQCA------GSGQRSSGASSFTASPSFSRRHLHKMNI---GEASGGNSGAGGVHVPTTPRGTQLGRKFPVFKTPVQKKIPGIGNKKAVRPKGHPVSDST-----RKSRNSSAGRHTKISTITPIREHEDYL-------------DVGITSALMVSPTKAIHGVVTPSIGSEGGVSGEGSS----RPKKRAKKLFSS 569
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2247 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_003990.1 |
| Cds size | 1845 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870311.365235-UTR-A-nodosum_M_contig89:235076..235337 | 1680870311.365235-UTR-A-nodosum_M_contig89:235076..235337 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig89 235077..235337 - |
| 1680870311.4822514-UTR-A-nodosum_M_contig89:238614..238755 | 1680870311.4822514-UTR-A-nodosum_M_contig89:238614..238755 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig89 238615..238755 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870311.3887424-CDS-A-nodosum_M_contig89:235337..235659 | 1680870311.3887424-CDS-A-nodosum_M_contig89:235337..235659 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 235338..235659 - |
| 1680870311.4054227-CDS-A-nodosum_M_contig89:235881..236345 | 1680870311.4054227-CDS-A-nodosum_M_contig89:235881..236345 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 235882..236345 - |
| 1680870311.4191191-CDS-A-nodosum_M_contig89:236600..236696 | 1680870311.4191191-CDS-A-nodosum_M_contig89:236600..236696 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 236601..236696 - |
| 1680870311.4347715-CDS-A-nodosum_M_contig89:236799..236894 | 1680870311.4347715-CDS-A-nodosum_M_contig89:236799..236894 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 236800..236894 - |
| 1680870311.4447885-CDS-A-nodosum_M_contig89:237142..237329 | 1680870311.4447885-CDS-A-nodosum_M_contig89:237142..237329 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 237143..237329 - |
| 1680870311.454883-CDS-A-nodosum_M_contig89:237559..238039 | 1680870311.454883-CDS-A-nodosum_M_contig89:237559..238039 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 237560..238039 - |
| 1680870311.4704382-CDS-A-nodosum_M_contig89:238413..238614 | 1680870311.4704382-CDS-A-nodosum_M_contig89:238413..238614 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig89 238414..238614 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig89.29.5 >prot_A-nodosum_M_contig89.29.5 ID=prot_A-nodosum_M_contig89.29.5|Name=mRNA_A-nodosum_M_contig89.29.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=615bp
MENTMPKHCVSQFPGGSLIQQPNSHCPNAQLETTNLGKGTAIQVLPTLPR RSDALRNSSIAGNLRSDRAETLDSTHDEARPGGSTIEQESSLAIVPYTGG RHLQAGCEMPGLRCRLFNLTSNDQRGIRFAPTSSPVTASTADILSSGGRE VSSDLAETRSLKRGFNSSSSNSLRQKERPEWVVVSAEQAEHAARKLRSEN EKNKTLQARLERHKRDRVLIYDAAMKQAAEREEEGVKDAKRMFERERLVM RAEVDHELLKINDLHEKRCRDYAQMVSDECEEEISKATAELREGWAREKK TIAQIVREGAEEDRQASAMPCVAVIARAVMEHLQEEKKDEVTALREEIYA EVKAEFENREVSMRDALQSEFQADLDGQLLLAEIRHQKEMDQLRTELRRD HAPSAEKADETIVVYSRGTTPKQRDRGDHGNDRDRDPDPNSSTPSPSLPR HSLQQKMPFRGARNGGNDGGVAPAPAVRGKTGLVKKLPIFRTPAQKAPAS SDIKTTDMKSGRSNEPTAQLRPRIKRFSRSPKTGNIASVMPKPLDYVPQK HQDEDQNENEDDSITSALTVSPTKTSGIAVTPSMGVESTFIEKASTHEPQ RPKKRGKRLFTAQT* back to topmRNA from alignment at A-nodosum_M_contig89:235077..238755- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig89.29.5 ID=mRNA_A-nodosum_M_contig89.29.5|Name=mRNA_A-nodosum_M_contig89.29.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3679bp|location=Sequence derived from alignment at A-nodosum_M_contig89:235077..238755- (Ascophyllum nodosum dioecious) ATTTAGGTTGCCGCTCTCAGGCCAGGCACAAGAAATTGTACTACTACTGT
ACCTGATTCCTATCTTCAGTAGGAAAGCATTGTTGCATCGGGGTCTTCGT
ATTGTGTAGGGGGGCGAATGCGCTAACAGTCTGATAGAGAAATGGAAAAC
ACGATGCCCAAACACTGCGTCTCACAATTTCCTGGGGGATCACTCATTCA
ACAACCAAACTCGCACTGCCCGAATGCCCAGCTTGAAACTACCAATCTAG
GAAAGGGAACTGCAATCCAAGTTTTGCCCACTCTCCCACGACGGTCAGAT
GCGCTCAGGAATTCAAGCATTGCTGGGAATCTCCGGTCCGACGTGAGACC
TTCCCTAATAAGATCAGCAACGTTGATGGCGGGGCATTCTAGGGAAACAT
GTAGGAGTACCATAGTAGCTCTACGAGTAGAATCAGAGTACAGAAGCGGC
TGATCGAAAATACTCATCATGTCACATGATTTCTGCGACGAATCATTGTC
CTCAGGCTTTCAATCTTGTGCTGTTTCGACATCATCCTACACGTACTCCT
GTGCTAAAGACACGAAAATTCGCAGCAATAGCTCAGGTACTTGTAGTAGC
AACTCAGGCCATGACTTTCGCCAGCGATACAATCAATCAATCCTCTTACT
GGCCTTCCCCTCAACTTCGGGGCCACCACCCTCACTACTTTGATCGAATT
TCCGGCGTCATAGCAGCGTGCCGAGACCTTGGATTCGACGCATGATGAGG
CTCGTCCTGGTGGATCGACCATTGAGCAAGAGAGCTCGTTGGCAATCGTA
CCTTACACTGGTGGTCGACACCTGCAAGCTGGTTGTGAAATGCCGGGTCT
CCGCTGCCGACTATTCAACTTGACCTCTAACGATCAACGAGGTATTCGAT
TTGCCCCCACGAGTAGTCCGGTAACTGCTTCAACCGCCGACATCCTCAGC
AGCGGTGGAAGGGAGGTATCGAGCGACTTGGCGGAAACAAGAAGCTTGAA
GCGGGGCTTCAATAGCTCTAGTTCAAATAGTCTGCGCCAGAAAGAACGAC
CTGAATGGGTGGTGGTGTCCGCAGAGCAGGCGGAACACGCAGCAAGAAAG
CTGCGAAGCGAAAATGAAAAGAATAAAACCTTACAGGCCAGGCTGGAGAG
ACACAAGCGTGATCGGGTCTTGATCTACGACGCCGCTATGAAGCAGGTAA
AAGCAATGAGCATGAATGCTTCGGGCAAGACGTCCATTGGGCGTCACGTG
ATACGTGTACGGTCTACTGTATCATTGAACTCCTCTAGTTCCAGCAGCTC
TTTAACCCAAGGGTTTTTGGTCACCTACCTGCATCGAAGGATAGTGGCTC
GATAAGTGCGTGAAGAAAAAAGAAGATGCTCTCGCATTTCTTTAAAGTAT
GAACTTCCCCTAAACCCTATTAATAGGCGGCAGAGAGAGAGGAGGAGGGT
GTCAAGGACGCCAAAAGAATGTTCGAACGAGAAAGGCTTGTAATGAGAGC
GGAAGTTGATCACGAACTACTCAAGATTAACGACCTCCATGAGAAACGTT
GCCGAGACTACGCGCAAATGGTGTCGGACGAGTGTGAGGAGGAGATCTCG
AAGGCCACCGCCGGTGAGCGACCTGCTGCTAGTAAACGAAGTCCATGCTT
GTGCACTACGGTAAACTTATTTGTTATAAACACTTCGGCGACCCGTAAAA
GCTTCTTGCAGTATTCCCTGTTCGTTTTCTGGTGATGTGTTTCCTTGTGT
TCTTTATTGCCCTGCACTTCTTTGTTAATAAGACTTCGGCGAACCATGAG
AGCTTATTGTAGTGATCCTTGTTCGTTTTCTGTCGCCCGTGTTCTCCCGT
TGCTCCCGCAGAGCTCAGGGAAGGTTGGGCGAGAGAGAAAAAGACAATCG
CCCAGATTGTGCGAGAAGGGGCAGAGGAGGATCGACAGGCAAGCGCGATG
CCATGTGTGCACAATCCTCCGTTTGCCTCGTCTACACGCCGAGGCTTAAC
GCAAGCACCTTTAGATGACATTTGTGGGCAATCTCGTGAGTTCGAAGCTG
CTGTGACAGGTGGCGGTGATTGCGCGGGCGGTGATGGAACATCTGCAAGA
AGAGAAGAAGGACGAAGTGACTGCTCTGAGAGAAGAAATCTACGCTGAAG
TCAAGGTAGTGTCGCACTTCGGTCCTGAGGGCTCCCATCGCATGTCGATA
GCTGGAAGATTCCGTTTCATACTAAATGTTTAAATTCGAACGACTGGTAC
GGAGAGCAGAAATATACTCTAAAATCAAGGTAATTTCGTACTTCGGTCAT
GGAGGCTCCCATTGCATGTCGATAACAGGAACACTCCGTTTCATACGGAA
GGGTTACACTCCAACGGCTGATACCCACCGTATGCCTGATTGGCCCGATC
CTCTCCTTAGGCTGAGTTTGAGAATCGCGAGGTGTCTATGCGAGATGCTC
TTCAGAGCGAATTCCAGGCAGACCTGGATGGCCAGCTTCTTTTGGCCGAG
ATTCGCCACCAAAAAGAAATGGATCAGCTACGGACGGAGTTACGCCGTGA
TCACGCACCCTCTGCCGAAAAAGCGGACGAGACCATTGTTGTGTATAGCA
GAGGGACAACGCCAAAACAAAGGGACAGGGGCGACCACGGGAATGACAGG
GATCGAGACCCAGACCCAAATTCTTCGACTCCATCTCCGTCGCTTCCAAG
GCACTCCCTGCAGCAGAAGATGCCCTTCCGAGGTGCAAGAAATGGTGGAA
ACGATGGCGGCGTGGCGCCGGCGCCGGCTGTACGTGGGAAAACTGGGCTG
GTGAAAAAGCTCCCTATTTTCAGGACTCCTGCCCAGAAGGCCCCAGCCAG
TAGCGATATCAAGACGACGGACATGTGAGGTGTCGTTCGCATGTTGTGTG
TCACGGAGTGTCACAATTTACAGCAATCGGGAACCGACTTTTTGCTCACG
GTCAACTGGTCTTTACGCCTCTGTACCGCATCCTTAACCTTGTACCGTGG
ACCAGCGCATATCTGCGGGACTGTTACCTCTTGACAGCTCATTCAACCCG
CTGGCCTCCGTGCATCAAATTGTGGTCTGCCAAATTCATTATCCAGGAAA
TCAGGTCGATCCAACGAACCCACCGCACAGCTCCGGCCTCGGATCAAACG
TTTCTCCCGGTCCCCCAAGACTGGCAATATTGCGAGCGTCATGCCCAAGC
CGCTTGATTACGTACCTCAAAAACATCAAGATGAAGATCAAAATGAAAAT
GAAGATGACAGTATTACGAGTGCACTAACGGTCTCGCCAACCAAAACCTC
TGGGATAGCCGTTACGCCTTCTATGGGCGTTGAGAGCACCTTCATTGAGA
AAGCGTCGACTCATGAGCCGCAAAGACCAAAGAAGCGAGGAAAGCGCCTT
TTTACGGCGCAAACGTAGGATGTGGTTATGAATCGAGATTCATGAAGCGT
GGTTCACGAATCGAGATTGGAGATTCGGTCGTGTTTAGCTGTGTTGCATA
TCGTGGGGTCGAGGTCGGTATGTTGTATTGAATTGGAGTACAAGGAATTA
TTTCCGAGTCGCAATAGATTTCATGGACATAGTTGCTCATGGGACGGAGT
ACTCGTTTTGGTGAAGACTCTCTCGCGCCCTCCATTGCGCTATGAGTCTT
CGCGGAACACCACATTGGAGCCTGGCCTA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig89:235077..238755- >mRNA_A-nodosum_M_contig89.29.5 ID=mRNA_A-nodosum_M_contig89.29.5|Name=mRNA_A-nodosum_M_contig89.29.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=1845bp|location=Sequence derived from alignment at A-nodosum_M_contig89:235077..238755- (Ascophyllum nodosum dioecious) ATGGAAAACACGATGCCCAAACACTGCGTCTCACAATTTCCTGGGGGATC ACTCATTCAACAACCAAACTCGCACTGCCCGAATGCCCAGCTTGAAACTA CCAATCTAGGAAAGGGAACTGCAATCCAAGTTTTGCCCACTCTCCCACGA CGGTCAGATGCGCTCAGGAATTCAAGCATTGCTGGGAATCTCCGGTCCGA CCGTGCCGAGACCTTGGATTCGACGCATGATGAGGCTCGTCCTGGTGGAT CGACCATTGAGCAAGAGAGCTCGTTGGCAATCGTACCTTACACTGGTGGT CGACACCTGCAAGCTGGTTGTGAAATGCCGGGTCTCCGCTGCCGACTATT CAACTTGACCTCTAACGATCAACGAGGTATTCGATTTGCCCCCACGAGTA GTCCGGTAACTGCTTCAACCGCCGACATCCTCAGCAGCGGTGGAAGGGAG GTATCGAGCGACTTGGCGGAAACAAGAAGCTTGAAGCGGGGCTTCAATAG CTCTAGTTCAAATAGTCTGCGCCAGAAAGAACGACCTGAATGGGTGGTGG TGTCCGCAGAGCAGGCGGAACACGCAGCAAGAAAGCTGCGAAGCGAAAAT GAAAAGAATAAAACCTTACAGGCCAGGCTGGAGAGACACAAGCGTGATCG GGTCTTGATCTACGACGCCGCTATGAAGCAGGCGGCAGAGAGAGAGGAGG AGGGTGTCAAGGACGCCAAAAGAATGTTCGAACGAGAAAGGCTTGTAATG AGAGCGGAAGTTGATCACGAACTACTCAAGATTAACGACCTCCATGAGAA ACGTTGCCGAGACTACGCGCAAATGGTGTCGGACGAGTGTGAGGAGGAGA TCTCGAAGGCCACCGCCGAGCTCAGGGAAGGTTGGGCGAGAGAGAAAAAG ACAATCGCCCAGATTGTGCGAGAAGGGGCAGAGGAGGATCGACAGGCAAG CGCGATGCCATGTGTGGCGGTGATTGCGCGGGCGGTGATGGAACATCTGC AAGAAGAGAAGAAGGACGAAGTGACTGCTCTGAGAGAAGAAATCTACGCT GAAGTCAAGGCTGAGTTTGAGAATCGCGAGGTGTCTATGCGAGATGCTCT TCAGAGCGAATTCCAGGCAGACCTGGATGGCCAGCTTCTTTTGGCCGAGA TTCGCCACCAAAAAGAAATGGATCAGCTACGGACGGAGTTACGCCGTGAT CACGCACCCTCTGCCGAAAAAGCGGACGAGACCATTGTTGTGTATAGCAG AGGGACAACGCCAAAACAAAGGGACAGGGGCGACCACGGGAATGACAGGG ATCGAGACCCAGACCCAAATTCTTCGACTCCATCTCCGTCGCTTCCAAGG CACTCCCTGCAGCAGAAGATGCCCTTCCGAGGTGCAAGAAATGGTGGAAA CGATGGCGGCGTGGCGCCGGCGCCGGCTGTACGTGGGAAAACTGGGCTGG TGAAAAAGCTCCCTATTTTCAGGACTCCTGCCCAGAAGGCCCCAGCCAGT AGCGATATCAAGACGACGGACATGAAATCAGGTCGATCCAACGAACCCAC CGCACAGCTCCGGCCTCGGATCAAACGTTTCTCCCGGTCCCCCAAGACTG GCAATATTGCGAGCGTCATGCCCAAGCCGCTTGATTACGTACCTCAAAAA CATCAAGATGAAGATCAAAATGAAAATGAAGATGACAGTATTACGAGTGC ACTAACGGTCTCGCCAACCAAAACCTCTGGGATAGCCGTTACGCCTTCTA TGGGCGTTGAGAGCACCTTCATTGAGAAAGCGTCGACTCATGAGCCGCAA AGACCAAAGAAGCGAGGAAAGCGCCTTTTTACGGCGCAAACGTAG back to top
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