mRNA_A-nodosum_M_contig89.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig89.7.1
Unique NamemRNA_A-nodosum_M_contig89.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A6H5KRB1_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB1_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 2.290e-216
Identity = 399/756 (52.78%), Postives = 490/756 (64.81%), Query Frame = 1
Query:    1 MDMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGD-NLGTGNVNGQ--TGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLV---AHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDF-----GTGDSEESEAG----SDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDGDGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQGYLQRALQ--VHLTAQDAREIPDKAGFSDSDAEAHD----GPPSDS---------------------RKGVIDSVRIG--QDCGGTVAIVSGLFSQEEDIRALAKQGITVRTSSGAR-GELRGPFGKLGKCKVEFSH--GVSLQVGEFVLGP 2127
            MDM++LV+DATKGMQAQT+ECVVIGEAVM+  A VI+VLNKVDL+ +QER+  L    K I A+LA TKLS ASFVSCAAAVGGEKT AS  +       +G+ ++A   SG   +A G +       D   G G+   +  TG      P +C +E   MGI++VA ELTRRA++PSR  S+ LYFAFDHCFSVRGQGTILTGTVL GEVK+NQLVELP+LR+ K+VKSMQMFRKPV +AR    AGDRVG+C+A+LDAKL+ERG VTTPG+ +PIS+A+AL+RKVPAF G+C SG+YCHVSLGH+T +ATATFFGASELKN    LF     G   +E  G      + + +   L+++AS PFP +A F+QQ  L    +  S+ G D  V  +  P         LQYCHL FHTPVI PPSSVVLGSRLD  S           +EE+  G     +HCRIAF+GRL+  + G    +          +EFG +AGQ+K+FTEK KTG +FRV   D +    V V  KDLFKKETN  PF+GM+L+TE GS+G +ES FGKAGRFKARFPAGTSVK GD L LKFRKY RD SK+MHQGYL+ AL+   H   + AR   D     D D + HD    GP + +                     R GV+DSV+ G   D    +A VSGLFSQEEDIR +AK+G++VR  +G   G L+GPFGKLGKCKV F    G  L+ GE V  P
Sbjct:  101 MDMMLLVVDATKGMQAQTMECVVIGEAVMSSGAAVIVVLNKVDLIPEQERKARLRQAEKKIAAQLAGTKLSSASFVSCAAAVGGEKTAASTPLAGSRSS-KGRAKKAGVLSGNVGSAEGATRHQKGSKDVRPGGGDDPAEPLTGITPPRPPSSCSEETPAMGIEAVAGELTRRARVPSRRASAPLYFAFDHCFSVRGQGTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKPVFIAR----AGDRVGMCVASLDAKLMERGVVTTPGSVRPISAAIALVRKVPAFTGQCLSGAYCHVSLGHSTAMATATFFGASELKNGLLRLFEHSADGLQALEALG-----DAGQGQELSLNEIASLPFPSEAAFVQQTHLCGVGSENSTAGADDEVCVDERP--------VLQYCHLTFHTPVITPPSSVVLGSRLDSMSSSLYKTEAAHPTEETIEGLAAVQEHCRIAFHGRLVSLSAG-VDGTRKGSGDARAALEFGTQAGQLKLFTEKCKTGVVFRVAPNDQTGGGAVEVFGKDLFKKETNMPPFVGMLLLTEGGSVGHLESTFGKAGRFKARFPAGTSVKVGDKLILKFRKYFRDPSKRMHQGYLREALERHPHQPTEGAR-TADNPMSDDKDHDNHDEGAPGPAAATTTGVEEPAAQETRQEPPRPHLRDGVVDSVKEGVADDEPVVIAFVSGLFSQEEDIREMAKRGMSVRIETGGLVGRLKGPFGKLGKCKVVFEREEGGYLRPGERVFVP 836          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: F0YCG3_AURAN (Putative selenocysteine-specific elongation factor, selB n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCG3_AURAN)

HSP 1 Score: 342 bits (877), Expect = 7.720e-104
Identity = 269/736 (36.55%), Postives = 356/736 (48.37%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDA--EFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDG----DGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQG----------YLQRALQVHLTAQDAREIPDKAGFSDSDAEAHDGPP------SDSRKGVIDSVRIGQDCGGTVA----IVSGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVGE---FVLG 2124
            DM+VLV+D  KG+Q QT EC+VIGE   +   ++IIVLNKVD++ + ER  ++    K I  +LA +K + A+ V+CAAAVGGEK  A+A                                       LGT                     A ++G++ +   L RRA++PSR      +FA DHCF +RGQGT++TGT LRG   +N +VELP + + K+VKSMQMFRKPV       V GDR G+CL+ LDA  +ERG V  PG+   I+SA+AL+RKV  FRG C +    HV+LGHTT +ATA FFGA+EL  +                                   K A  P  FD+  E++ QE L A     G D        P + +L    LQ+C L F T V     ++V+GS L            E++A +D CRIAF+G+L+    G A A+                  ++K++  K K G + ++GD      G+R  + VV  KDLFKKETN A F+GM L    G MGR+ SAFGK+G+FK  FP GT VK    L+L F+KY+   SK MHQ              RA +    A DA   P   G           PP      S+ R G ++  + G    GT      I  G F+ EED R  A  G  V  ++G  G L GPFGK GK KV F+ G    VG     VLG
Sbjct:  109 DMMVLVMDVNKGIQTQTAECLVIGEITTS---ELIIVLNKVDVIPEAERDATVAKTTKRIRLQLASSKFANATIVTCAAAVGGEKRAAAA---------------------------------------LGT---------------------APSLGLEGLVETLRRRARMPSRDVEGPFFFAIDHCFPIRGQGTVVTGTALRGACAVNDIVELPEVGLEKKVKSMQMFRKPVKKI----VCGDRAGLCLSQLDAAAIERGIVAAPGSVPGINSALALVRKVRFFRGPCDTDRKFHVTLGHTTTLATAYFFGAAELAARP----------------------------------KPAEPPTAFDSSREYVFQEQLAASKRKKGADDDGGDGPGPGS-DLNDEPLQWCLLKFETRVRCQLDALVIGSNL------------EADALADKCRIAFHGKLVERVDGDAFAT------------------KVKLYKLKRKEGLVAKLGDPCVDVTGARVVKDVV-GKDLFKKETNMAAFVGMKLQAATGEMGRVASAFGKSGKFKVDFPGGTLVKPNGKLYLVFKKYVFSPSKAMHQDDDCRVPRDELEQARAPKKKTPAPDA---PPSPGRXXXXXXXXXXPPPAPPPLSNDRSGTVERHK-GDPMAGTARYETIIAEGFFTAEEDQRVHA--GTKVTAANGDVGSLVGPFGKAGKSKVAFADGTDAAVGSKLALVLG 705          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A7S2PGD4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PGD4_9STRA)

HSP 1 Score: 325 bits (833), Expect = 3.180e-95
Identity = 239/718 (33.29%), Postives = 358/718 (49.86%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQ--RRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGD----GDGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQ-GYLQRALQVHLTAQDAREIPDKAGFSDSDAEAHDGPPSDSRKGVIDSVR-----IGQDCGGTVAIVSGLFSQEEDI-RALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVGEFV 2118
            DM++LV+DATKGMQ QT EC+VI E    +   +I+VLNK+D+  + ER+E +    K I   L  TK   A  V  +A VGGEK  A      + GGG G     N                 A G+  GT N++G                     +D + +++ R     +R +    +FA DHCF ++GQGT+LTGT L G  + N +VE P L   K++K +QMFR+  ++ +     GDR GIC++N DAKL+ERG + +PGT + I  A+A++RKV  F+G+  SG   HVS+GH TV+AT TF+GA E+  Q  R +      + +       GK +     D    L  +    F ++ +FL Q++ +  I  +  D         S        L +  L F TPV  P  S+V+GSRLD            +E  ++ CR+AF GRL+                D  Q       G++K +T+K K G   R+GD     D ++     +   DLFKKETN + F+G+++ T+ G +G I+S+FG +G+F+  FPAGT +K GD+L+L+F++Y  D  K +HQ G L +A          +           D +      S ++ G +  +      I ++    +AIVSGLF+  +DI +   ++ + V T     G + G FGK+GK KV F +GVS +VG  V
Sbjct:  309 DMVLLVVDATKGMQTQTAECLVIAEMTTRN---LIVVLNKIDMFPENEREERVQLAEKKILMALRGTKFEDAKMVGISACVGGEKVAAVGDGGGLIGGGTGSVTATN-----------------AHGEVAGTNNIHGL--------------------LDVLQSQM-RAPNRDARPSPERFHFAVDHCFPIKGQGTVLTGTCLSGSARPNDMVEFPTLATQKKIKGLQMFRRKANIIQQ----GDRAGICVSNFDAKLMERGTIASPGTIKLIHGAIAVVRKVRFFKGQLNSGGKFHVSVGHQTVMATVTFWGAREIARQVEREQESQQQQMASNGNAPILGKSSLGGTAD----LAGLPRLKFDWNQDFLHQDNYLESIP-VSDDVLTSQVVETSKDGDSQPPLHWARLEFLTPVYCPMDSLVIGSRLD------------TEVNANACRLAFSGRLVERY-------------DERQDN-----GRLKSYTKKEKVGRCCRLGDPYRRSDDNKLVRYEIFGTDLFKKETNMSQFVGLLIETDSGDVGSIQSSFGSSGKFRVHFPAGTGLKEGDSLYLRFKRYANDPRKAIHQDGTLPQARIGSRVDPPVKXXXXXXXXXXXDEQ------SSTKNGAVGEIEKLKGDILENGKSPMAIVSGLFTMADDISKHKGRKVVAVTTEE--EGSIHGSFGKMGKVKVSFENGVSAEVGSRV 938          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: K0RBX0_THAOC (Tr-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RBX0_THAOC)

HSP 1 Score: 314 bits (804), Expect = 6.730e-91
Identity = 250/744 (33.60%), Postives = 354/744 (47.58%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSN---LYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGG--GKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESL--PSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGD----GDGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQ-GYLQRALQVHLTAQDAREI----------------------------PDKAGFSDSDAEAHDGPPSDSRKGVIDSVRIGQDCGG--TVAIVSGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVG 2109
            DM++LV+DATKG+Q QT EC+VI E    +   +I+VLNK+DL    ER+E L    K +   L  TK   A  V  +A VGGEK                             AA G  A+A        T N++G                        +   L  + + P+R T  +    +FA DHCF ++GQGT+LTGT L G  + N LVE P L   K++K +QMFR+  ++ +     GDR GIC++N DAKL+ERG V  PGT + I  A+A++RK    +G   SG+  H+S+GHTTV+AT TF+GA E+  Q  E          VVE G   GK +   + D    L  +    F +D +FL Q++   ++ SL  D      S   P         L +  + F TPV  P  S+V+GSRLD            SE  ++ CR+AF GRL+                D+         G+++ +T+K K G++ R+GD    GD  +     V   DLFKKETN   F+G+++ T+ G +G I+S+FG +G+F+  FPAGT V+ GD L+L+F++Y  D  K + Q G +  A         A+                              P+  G      +A D   +    G I  ++ G   GG  TVAI SGLFS E+DI     + + V  S+   G + G FGK+GKCKV F  GVS +VG
Sbjct:  322 DMVLLVVDATKGIQTQTAECLVIAEMTTRN---LIVVLNKIDLFPANEREERLRQAEKKMRNALRGTKFENAQMVGISACVGGEKV----------------------------AAVGQDAAACVISS---TNNIHG------------------------LLNVLQSQMRAPNRDTQPSPERFHFAVDHCFPIKGQGTVLTGTCLSGSARPNDLVEFPTLATQKKIKGLQMFRRKANVIQQ----GDRAGICVSNFDAKLMERGIVAAPGTVRLIRGAIAVVRKAGFSKGGVNSGAKFHISVGHTTVMATVTFWGAREIARQAEEHL--AAQQQSVVENGESHGKSSLGGSAD----LAGLPRLRFDWDQDFLHQDN---YLDSLPDDTDWGGRSSHQPVGKQSEEMPLHWARIEFLTPVYCPMDSLVIGSRLD------------SEVNANACRLAFSGRLVERY---------DAKSDN---------GRLRSYTKKEKVGTVCRLGDPYKRGDDGKIVRYEVFGTDLFKKETNMTQFVGLLIETDAGDVGIIQSSFGTSGKFRVSFPAGTEVREGDPLYLRFKRYANDPRKAIRQDGSVPAARTGSRVDPPAKXXXXXXXXXXXXXXXXXXXXXXXXXHVVRPPNGTGARPGTGDACDSEVT----GEIAKLKDGPTEGGRPTVAIASGLFSMEDDIGKHRGRRV-VALSTDEEGAVDGSFGKMGKCKVLFKGGVSAEVG 959          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: B8C2Z6_THAPS (Selenocysteine-specific elongation factor SelB (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2Z6_THAPS)

HSP 1 Score: 310 bits (795), Expect = 7.680e-91
Identity = 233/727 (32.05%), Postives = 351/727 (48.28%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGD----GDGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQ-GYLQRA-----LQVHLTAQDAREIPDKA---------GFSDSDAEAHDGP-PSDSRKGVIDSVRIGQDCGG--TVAIVSGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVGEFV 2118
            DM++LV+DATKG+Q QT EC+VI E    +   +I+VLNKVDL  + ER+E +    K +   L  TK   A  V  +A VGGEK  A                                          GT N++G      +      RD                     S+ +    +FA DHCF ++GQGT+LTGT L G  + N +VE P L   K++K +QMFR+  ++ +     GDR GIC++N DAKL+ERG + +PGT + I  A+A++RKV  F+G   SG+  HVS+GHTTV+AT TF+GA                  G  +  G                 +    F ++ +FL Q+D +  + S+  + +   ES  +    +   L +  L F TPV  P  S+V+GSRLD            +E  ++ CR+AF GRL+                DH          ++K +T+K K G++ R+GD     D ++     V   DLFKKETN + F+G+++ T+ G +G I+S+FG +G+F+  FPAGT ++ GD L+L+F++Y  D  K +HQ G L RA     + V +  + ++     A         G + +D    +G    D + G +D ++      G  T++IVSGLFS  +DI     + + V T++   G + G FGK+GKC+  F  G+S +VG  V
Sbjct:  107 DMVLLVVDATKGIQTQTAECLVIAEMTTRN---LIVVLNKVDLFPENEREERIRMAEKKMRMSLRGTKFENAMMVGISACVGGEKVAAIG----------------------------------------GTNNIHGLLNILQSQIRAPSRD---------------------SKPSPDRFHFAVDHCFPIKGQGTVLTGTCLSGSARPNDMVEFPTLATQKKIKGLQMFRRKANIIQQ----GDRAGICVSNFDAKLMERGIIASPGTVKLIRGAIAVVRKVRFFKGGLHSGAKFHVSVGHTTVMATVTFWGAR-----------------GSADLAG-----------------LPRLKFDWNQDFLHQDDYLEVLPSVDNNSNNNDESDKAKEKGLP-PLHWARLEFLTPVYCPIDSLVIGSRLD------------TEVNANTCRLAFSGRLVERY---------EAKTDH---------NRLKSYTKKEKIGTVCRLGDPFRRSDDNKLVRYEVFGTDLFKKETNMSQFVGLLMETDRGDIGSIQSSFGTSGKFRVNFPAGTDIREGDPLYLRFKRYANDPKKAIHQDGSLPRARPGSRVDVPIKKKKSKSKNGAAHGGLATGDGGTAKNDVIGSNGSNDKDVKIGEVDKLKGDVLPNGKHTMSIVSGLFSMADDINKHKGRRV-VCTTTEEEGVVDGSFGKMGKCRCLFEDGISAEVGSQV 699          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A1Z5J8H9_FISSO (Tr-type G domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8H9_FISSO)

HSP 1 Score: 301 bits (772), Expect = 1.800e-88
Identity = 236/721 (32.73%), Postives = 348/721 (48.27%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSN-----LYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFR-GRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIA--SDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDGDGSRKSEVVVLC-----KDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQGYLQRALQVHLTAQDAREIPDKAGFSDSDAEAHDGPPSDSRKGVID---SVRIGQDCGG--TVAIVSGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVGE 2112
            DM++L++DA KG QAQT EC+V+ +    H   +++ LNK D+    ER++ L A +  +  RL  T+ + A  +  AA VGGEK  A+A              E  K S + +                                         T  +D +   L  +   P R  ++       YF+ DHCF +RG+GT+LTGTVL G   +N  +E P+L + +++KS+QMF++ V   +     GDR GIC++NLDAKLLERG V  PG       A+AL+RKVP +  G+    S  HVS+GHTTV+AT TF+GA EL +Q  E   D              +  SS    +  L  +   PF F  +F+ Q+ L+  +     DP    E+L          L +  L F TPV  P  S+V+GSRLD+A  SD GT  S         CR+AF GRLI                   ++E      QI+++TEK K G + ++GD    R  +  V+C      DLFKKETN   F+GM + TE G +G I+S++G +G+F+  FP GT V+ G+ L+L+F++++ D +K M Q           TA        +    +   EA+   P +    +I    S++      G  ++AIVSG F+ E +I+      + +  S+   G + G FGK GKCKV F  G+S + G+
Sbjct:  110 DMVLLIVDAVKGWQAQTTECLVLAQLTSPH---LLVALNKADMFEPNEREKQLEAAKSKVRKRLKGTRFADAPMIGVAACVGGEKAAANA--------------EETKTSAVHE-----------------------------------------TYQMDLLVDLLKAKLPPPRRSVTNEAKEQPFYFSVDHCFPIRGRGTVLTGTVLSGFAAVNDGIEFPSLGMDRKIKSIQMFKRQVQHIQQ----GDRAGICVSNLDAKLLERGIVAAPGAVPLWKGAIALVRKVPYYTSGKLMCNSKFHVSVGHTTVMATLTFWGARELAHQAAEAKNDASS----------NKLMSSWLGGDADLAGLPKIPFDFQQDFVFQDSLLETLDIAPGDPQ---ETL----------LHWALLDFQTPVYCPAHSLVIGSRLDVAVDSDGGTASS---------CRLAFSGRLIE------------------RVEPSTAMTQIRLYTEKQKVGVVSKLGDPH-KRFDDQKVVCYEIFGADLFKKETNMKLFIGMKMETEQGDIGEIKSSYGTSGKFRLYFPGGTEVQEGEPLYLRFKRFMHDPTKSMQQS----------TALPPSRPGARLEVENPKKEANKKKPREKGVNLIGELASIKGDVLANGKYSMAIVSGFFAPEINIKEKVGTKVFI-PSTQEEGSIVGGFGKAGKCKVAFELGISAKEGD 706          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A835ZB77_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB77_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.550e-81
Identity = 204/613 (33.28%), Postives = 296/613 (48.29%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFP-----FDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGT-LQYCHLAFHTPVIAPPSSVVLGSRLDI---------ASDFGTGDSEESEA------GSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDGDGSRKSEVV---------------------VLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTL 1716
            DM++LV+DATKGMQ QT ECVVIGE  MA   D++IVLNK DLM + ER+  +  ++  +  +LA TK ++A F + AAA G                                                      G + Q  A    A   +  + G+  +A  L    + P R  +   + A DHCF++RGQGT+LTGTVL G V++ Q++ELP L + ++VKSMQ++R+PV  A+     GDRVG+C+A LDA L+ERG    PG  +P+ +AVA +R V  FRG+C SG   HVS GH TV+ATAT+FGA+E+              A +V+      + + +E++  +    A S  P     +  +FLQQ  L       G D      +  +  +  G   LQ+  L F TPV APP  +V+GS+LD           +  GT  +  + A      G+  CRI  YGR++ A G G                  + A +++++T + + G IFRVG   G                            V  +DLF +++  A ++GMI+    G +GRIE  FG+AG+F+ARFP G + K G  L
Sbjct:  118 DMMLLVVDATKGMQTQTAECVVIGETTMASADDLVIVLNKADLMPEDEREARIARLQARMRRQLAGTKFARARFATVAAAPGXXXX------------------------------------------------XEGDSAQPAA---PADAKQHTSAGVVELAELLRSLVRSPQRSDTGPFHMAVDHCFALRGQGTVLTGTVLSGAVEVGQMIELPELAITRKVKSMQVYRRPVQRAQQ----GDRVGVCVAGLDAALVERGVAAAPGALRPVRAAVAAVRAVKFFRGKCPSGGKLHVSTGHATVMATATYFGAAEMA-------------AILVD-----RSPAQSEEQGTVPPPGALSDIPPVRVDWRRDFLQQPALTR-----GSDRPDSQAAASAATSQEGRPPLQFALLQFQTPVFAPPGGLVIGSKLDGDAGAQPAGGGAQRGTVPARAAAAEPSGXXGAGRCRICLYGRIVEAFGAGE-----------------LDAARLRLYTTRERRGVIFRVGAAAGGXXXXXXXXXXXXXXXXXXXXXAAHVHEVFGRDLFGRDSRVAAYVGMIVEGAQGEVGRIEGTFGQAGKFRARFPLGIAAKVGTPL 635          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A4D9D7I1_9STRA (Tr-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7I1_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.280e-75
Identity = 247/824 (29.98%), Postives = 376/824 (45.63%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPF-PFDAEFLQQEDLV--AHISSLGQDPSVVHESLPSNPNLVGGTL-------QYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEES---EAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDG-------DGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFP-----AGTSVKAGDTLFLKFRKYLRDQSKQMHQ----GYLQRALQV-HLTAQDAREIPDKAGFSDSDAEAHDGPPSDSR------------------KGVIDSVRIG--QDC--------------GGTV-------------------------------------------AIVSGLFSQEEDIRALAKQGITVRTSSG---ARGELRGPFGKLGKCKVEFS---HGV--SLQVGEFVLGPR 2130
            D+++L++DATKG+QAQTVECV++ E        +++ LNK+DL   +ER+E + A   A+   L  ++   A  V  AA +GGE  V S             G++       +K             +N GT              P        ++G++ ++  L +   +P R  S  L+ A DHCF ++GQGT+LTGTVLRG V +  +VELPAL + +RVKS+Q F + V+ A+H    GDRVG+CL +LDAK +ERG + TPG+   ++ AV  +R++ AFRGR +SG   HVS+GH TV+AT TFFGA EL   R +                G++     + +    D + + P+ P D  F  +ED +  A ++   +D     +      +  G          QY    F TPV+ P   +V+GSRLD+  + G G   E         H + A  GRL P   GG + +      + L+ E      +++++  K++ GSI+R+G+          S      V  +  FKKET+  PFLGM + T  G +G++ES FG+ G+ + RF      AG  V  G+ LFL FR+++ DQ K+M Q    G     L + H    +  E  ++ G    +  + +G P++ R                  K V++ V +   +D               GG +                                            IV+GLF+ EED+R      + +RT  G     G + GPFGK GK KV+F+   HG+  +     F L PR
Sbjct:  173 DLVLLLVDATKGVQAQTVECVMLAEVTAP---TLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSXXXXXXXXXXX-VGKQKXXXXXKRK-------------ENSGT------------RPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPMKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRKVAEAQH----GDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGERVHVSVGHGTVMATLTFFGAKELVRGREK-------------DKKGRQPREGRDGKGVRGDGVEARPWAPPDFPFSWEEDYLYQAEMAGAVEDEEEGEKEAGFKVSKEGDRRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDV--EIGHGQHPEPPDRRQKPTHAQGAREGRLSPTWMGGCRLAFCGTLLEALREE---DLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGKLESGFGRGGKVRVRFDEKGGLAGGHV--GEKLFLCFRRFVFDQEKRMVQRRQAGRDMSGLSLLHGEDTEPEEEVEEDGAEGGEKNSVEGEPAEDRRREEVLEGDGISEPREEEKRVVEGVDLSALEDSASHLYLGSQLPAARGGALRDGPGEEEAVATEAVPAVPLQLGAERDAEWRMGHIEKVRADGLVIVTGLFTMEEDVRNYKDLRVGLRTEEGQEAVEGYVVGPFGKGGKAKVQFARECHGLEGAWVTLSFSLVPR 943          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A7S2RBF0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RBF0_9STRA)

HSP 1 Score: 260 bits (664), Expect = 3.300e-74
Identity = 197/585 (33.68%), Postives = 279/585 (47.69%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSR--VTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGT-LQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDGD-GSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYLRD 1746
            D ++LV+D TKG+Q QT EC+VIGE +     D+++VLNK+DL+  ++R+  +  V K +E  L+ T+   +  +  +A VGG+                             KA  GGS        N+ T  V G               E   MG+D +   + R   +P R  + +  LYFA DHCF ++GQGT+LTGTVL G V     VE+P L + ++VKSMQMFRKPV  A      GDRV +CL NL+AKLLERG V + G+   IS A+ALIRKV  F  +C S S  HV++GH+T +   TFFG+ ELK+  +                               + K   +   FD+    + D                E L       GG  LQ+  L F TPVI    S+V+GSRLD   D            +  CRIAFYGR+           +   S+D L++        ++++  K + G++ R+ D   GS      V+ K++F KET    F+ + + TE   +GRIES FGK G+F   FP G +V  G  L L+ +KY+ D
Sbjct:  114 DRMLLVVDVTKGIQTQTAECLVIGEILTN---DLVVVLNKIDLIPDEKREAKIEKVSKMLEGALSTTRFKGSPIIPVSAIVGGDG----------------------------KAGVGGS--------NVETVVVEG---------------EHQVMGLDKLVDLIKRTTVLPERGDIANQPLYFAVDHCFPIKGQGTVLTGTVLNGSVSTGDTVEIPELLLERKVKSMQMFRKPVVHAEK----GDRVALCLTNLNAKLLERGVVASAGSVPRISGAIALIRKVKYFGKKCPSKSKIHVTVGHSTSMCNVTFFGSKELKDIAKTY-----------------------------VGKYLPTDLGFDSSLDYEFD----------------EELRGGGKAQGGPFLQWAFLEFETPVICQMGSMVIGSRLDADVD------------TKSCRIAFYGRITTQY-------LKKPSQDELKL--------LRIYKLKERVGNVERIVDKTVGSDGKVQNVIGKNMFSKETKMDYFINLQVHTEENEVGRIESTFGKTGKFNVFFPKGANVSKGSKLILRHKKYIFD 568          
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Match: A0A482S2W3_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2W3_9ARCH)

HSP 1 Score: 264 bits (674), Expect = 1.880e-73
Identity = 235/811 (28.98%), Postives = 354/811 (43.65%), Query Frame = 1
Query:    4 DMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQERQESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGGRGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQACRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILTGTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGICLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVSLGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAEDENKLLDKMAS-----SP--------------FPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLVGGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCRIAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSIFRVGDGDGSRKSEVV-VLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAFGKAGRFKARFPAGTSVKAGDTLFLKFRKYL-------------RDQSKQMHQGYLQRALQVHLTAQDARE-----------------IPDKA-----------------------------GFSDSDA------------------EAHDGPPSDS---------RKGVIDSVRIGQDCGGTVAIVSGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSLQVGEFV 2118
            DM++LV+DA KG+Q QT EC+VIGE       ++II LNK+D + +++R E +    K I   LA +K   A  +  +A VGGEK  A                                              V+G +    A+   A +    +MG++ + TE+ +  K+P R  ++  Y++ DHCF ++G GT+LTGTVL G V +N  +E+P LR +++VKSMQMF KPV  A+     GDRVGIC+ NLDAK +ER     P +   +SSA+ L++KV  F+  C+SG   H+++GH TVI T  FFGA EL+   + L     +     E G    TT S +   KLL  M       +P              FP DAE+L Q+        +     +V+   P+         Q+  + F   +  P  S+++GS+LD      T DS  S  G+  CR+AF+G L        KA +        Q         + V+  K K   +  + D    RK   V V+   L  + T+   ++GM ++   G +G I SA+G  G+F+ +F     +  GD L  ++++Y+              D   Q  Q  L+  ++    A  ++E                 I DK                              G +  DA                  EA    PS++         R+G ++S ++  D    +AI+SG F  EE+++     G  V TS+G +G +   FGKLGKCKV F+ G SL  GE V
Sbjct:  113 DMIILVVDANKGIQTQTAECIVIGEIT---SDNMIIALNKIDTIAEEDRPEKIEKASKKISKVLAASKFPHAKIIPLSAVVGGEKVAAV---------------------------------------------VSGSSSHSAAAKQTAVK----SMGVEDLITEIVQTVKLPHRNINAPFYYSIDHCFPIKGHGTVLTGTVLSGSVSVNSHIEIPHLRAVRKVKSMQMFHKPVDYAKQ----GDRVGICVTNLDAKSIERSIACAPDSVPLVSSALCLVKKVRFFKMSCKSGMKFHITVGHETVIGTVVFFGAEELQQASQLLT----LPDSSKEEGAIASTTPSVD---KLLQSMRQYHATYNPSLHGNFQQGFPQLDFPVDAEYLYQD-------KIRDTEGLVYGHEPA---------QWALIDFQHTIHCPLGSLIIGSKLDAD----TSDSRSS--GAHMCRLAFFGPL--------KAIVYPADGAAAQHPLAFPLPALGVYIWKEKYCEVVMLSD---VRKGGCVEVVGWKLVSERTSIQTYVGMKVLAPTGQVGSIVSAYGADGQFRVKFKVPVQLVVGDKLMFRYKRYVYNKARTITQEVYVEDVGSQEGQAGLENEMEHVKIANKSKERKKTMIQEEGGSVSAPPIRDKTPAMCSTTILPSTPSSPMLALSSEPNPVIVGVASIDASNIATDQNESVTTPVSPDEASPPLPSETAVEEMEGELREGKVESTKV--DGEHLIAIISGAFRMEENVKLYV--GSVVVTSTGVKGNVTASFGKLGKCKVMFAGGCSLPTGEGV 823          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig89.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRB1_9PHAE2.290e-21652.78Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
F0YCG3_AURAN7.720e-10436.55Putative selenocysteine-specific elongation factor... [more]
A0A7S2PGD4_9STRA3.180e-9533.29Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0RBX0_THAOC6.730e-9133.60Tr-type G domain-containing protein n=1 Tax=Thalas... [more]
B8C2Z6_THAPS7.680e-9132.05Selenocysteine-specific elongation factor SelB (Fr... [more]
A0A1Z5J8H9_FISSO1.800e-8832.73Tr-type G domain-containing protein n=2 Tax=Fistul... [more]
A0A835ZB77_9STRA1.550e-8133.28P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9D7I1_9STRA1.280e-7529.98Tr-type G domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2RBF0_9STRA3.300e-7433.68Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A482S2W3_9ARCH1.880e-7328.98GTP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig89contigA-nodosum_M_contig89:71388..75320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFS8
Preferred nameSELB
PFAMsGTP_EFTU,GTP_EFTU_D2,RIBIOP_C
Model size2145
Max annot lvl2759|Eukaryota
KEGG koko:K03833
Hectar predicted targeting categoryother localisation
GOsGO:0001514,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:2000112
Exons8
Evalue6.22e-216
EggNOG OGsCOG3276@1|root,KOG0461@2759|Eukaryota
Ec32 ortholog descriptionSelB, translation elongation factor specific to Sec-tRNA
Ec32 orthologEc-01_001080.1
Descriptionselenocysteine incorporation
Cds size2145
COG categoryJ
BRITEko00000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig89.7.1prot_A-nodosum_M_contig89.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig89 71388..75320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870307.3802106-CDS-A-nodosum_M_contig89:71387..718311680870307.3802106-CDS-A-nodosum_M_contig89:71387..71831Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 71388..71831 -
1680870307.3925438-CDS-A-nodosum_M_contig89:71988..720721680870307.3925438-CDS-A-nodosum_M_contig89:71988..72072Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 71989..72072 -
1680870307.4067729-CDS-A-nodosum_M_contig89:72273..730411680870307.4067729-CDS-A-nodosum_M_contig89:72273..73041Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 72274..73041 -
1680870307.4236326-CDS-A-nodosum_M_contig89:73240..733611680870307.4236326-CDS-A-nodosum_M_contig89:73240..73361Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 73241..73361 -
1680870307.435002-CDS-A-nodosum_M_contig89:73819..739201680870307.435002-CDS-A-nodosum_M_contig89:73819..73920Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 73820..73920 -
1680870307.449054-CDS-A-nodosum_M_contig89:74185..746061680870307.449054-CDS-A-nodosum_M_contig89:74185..74606Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 74186..74606 -
1680870307.4610426-CDS-A-nodosum_M_contig89:74854..749371680870307.4610426-CDS-A-nodosum_M_contig89:74854..74937Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 74855..74937 -
1680870307.4789755-CDS-A-nodosum_M_contig89:75197..753201680870307.4789755-CDS-A-nodosum_M_contig89:75197..75320Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig89 75198..75320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig89.7.1

>prot_A-nodosum_M_contig89.7.1 ID=prot_A-nodosum_M_contig89.7.1|Name=mRNA_A-nodosum_M_contig89.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=715bp
MDMLVLVIDATKGMQAQTVECVVIGEAVMAHDADVIIVLNKVDLMCQQER
QESLGAVRKAIEARLARTKLSKASFVSCAAAVGGEKTVASASVPKVTGGG
RGKGEEANKPSGLKKAAAGGSASAMAFGDNLGTGNVNGQTGQRLASSPQA
CRDEAATMGIDSVATELTRRAKIPSRVTSSNLYFAFDHCFSVRGQGTILT
GTVLRGEVKINQLVELPALRVLKRVKSMQMFRKPVSMARHARVAGDRVGI
CLANLDAKLLERGEVTTPGTGQPISSAVALIRKVPAFRGRCRSGSYCHVS
LGHTTVIATATFFGASELKNQRRELFWDVGVGAGVVECGGGKETTSSAED
ENKLLDKMASSPFPFDAEFLQQEDLVAHISSLGQDPSVVHESLPSNPNLV
GGTLQYCHLAFHTPVIAPPSSVVLGSRLDIASDFGTGDSEESEAGSDHCR
IAFYGRLIPATGGGAKASINSCSKDHLQIEFGVKAGQIKVFTEKIKTGSI
FRVGDGDGSRKSEVVVLCKDLFKKETNTAPFLGMILMTEHGSMGRIESAF
GKAGRFKARFPAGTSVKAGDTLFLKFRKYLRDQSKQMHQGYLQRALQVHL
TAQDAREIPDKAGFSDSDAEAHDGPPSDSRKGVIDSVRIGQDCGGTVAIV
SGLFSQEEDIRALAKQGITVRTSSGARGELRGPFGKLGKCKVEFSHGVSL
QVGEFVLGPRRTDA*
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mRNA from alignment at A-nodosum_M_contig89:71388..75320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig89.7.1 ID=mRNA_A-nodosum_M_contig89.7.1|Name=mRNA_A-nodosum_M_contig89.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3933bp|location=Sequence derived from alignment at A-nodosum_M_contig89:71388..75320- (Ascophyllum nodosum dioecious)
ATGGACATGCTGGTCCTTGTAATAGATGCGACGAAGGGCATGCAAGCTCA GACAGTCGAGTGCGTTGTGATTGGGGAGGCCGTAATGGCACATGATGCGG ACGTGATCATCGTGCTGAATAAGGTGAAACGCCATTTTGCCCGTTTTGTA TTGTAATTTCAATGCGCAGAGAGGAACAGAACCCTCGATACAGTAGGCCA GAGAAGATAGTTTCGTTTTGGATCGTATGTTGCGACAGGAGGGTGCATTG ATCGTCCTATGGTGTACCTGGTAGGTTGGAAGCTGGAATTAATCTTGGTA GCAATGTGTCGCGATGCAACTGCATTTATAACTACTGCTTTAACTACTAA TATTACTTTTACTAATACTATTACTATTACTAGGTGGATCTTATGTGTCA ACAAGAGCGACAAGAAAGCCTAGGCGCAGTCAGGAAGGCTATTGAGGCTC GCCTGGCTCGAACGAAGTGAGCCTTTACTTTTCAGTTACAAAGATTAGTC AACTATTAAAATAGAGAGCTTTGTTCCCCGCGTGGTCGTGTTCCATCCTA TGCTCTACTCTATGAACCTAATGGAACCTAATGAAGCGTTTCCCTGCAGG AGCGCGTATGAATATAATAGTTCGCCATGTTCGGGCAGTATGCGGAATAC ATATTGATTTGGATACTGCTACCGCGGAGCATACACTCAGGTAAACATCG CTTGTTTTTCTCAGGCTATCGAAGGCGTCGTTCGTGTCCTGTGCTGCAGC GGTTGGTGGCGAGAAGACCGTGGCATCTGCATCTGTGCCCAAGGTCACAG GGGGTGGTAGGGGCAAAGGTGAAGAGGCCAACAAGCCATCCGGGCTGAAG AAGGCTGCTGCGGGTGGATCTGCATCGGCAATGGCATTTGGCGATAACCT CGGCACTGGGAATGTCAATGGTCAAACCGGTCAACGCCTCGCTTCATCCC CTCAAGCATGTCGGGATGAAGCTGCAACGATGGGGATTGATTCGGTGGCC ACGGAACTAACGCGACGAGCAAAAATTCCCAGCAGGGTAACCTCTTCTAA TCTATACTTCGCCTTCGATCACTGCTTCTCCGTGCGAGGTCAAGGAACGA TTCTTACAGGCACCGTGCTTCGAGGAGAAGTCAAGGTTAGTGAAGGGGAA TACGGTTTCGTTGTGTCTGTGTCCAGGTGTTGTCATCAATCTGTGTTCTG GTATACTGTATATTTTTTGTCTCCCAGCTTTGAAGCTGCGATCCTGCACT CTCAACATATTATCAAAAAGCAGATTTGCCGTTGTGGGGTACATACATAC ATAAATACATTGGACGTGAACCGTTTTGGATCATCTTCCTGGGCAGCGGC ATCCTTTCACGTAATAACGCAACAAGCGGACTGACATCTTTGCTCCGCAG ATCAACCAACTAGTGGAGCTGCCAGCGCTGCGGGTCTTGAAGAGGGTCAA GTCCATGCAGATGTTCCGCAAACCTGTCTCTATGGCCAGGCACGCACGGG TGTCGTACGTCCTTAAATTTCCAATCGTATTTTTCCGGTGTAAGATCGTC GAATCTACTGTACCATTCTACAATGAAACGAACTATTACATAATGTAGAC TTCGCTTGATTCCCATCGTGTCTTGTCCCGCAAAGTTAAAGATTTTAACG CCTTAGAGGCGAAAGAGCGAAATAATTAAGTGTCACGTGCACACGTTCCG CAAACCTGTCTCTATGGCTAGGCACGCATGGGTGTCGTACGCTCTTTATT TTTCAATCGTATTTTTCCGGTGTAGGGTCACCGAATCTACTGTACCATTC TACTATGAAACGAACTATTATATACTGTAGACTTGGCTTGATTCCCATCG CGTCTTGTCCCGCAAAGTTAAAGCTTTTAATGCCTTAGAGGCGAAAGAGC GAAATATGTACCAGGTAAGTGACACGTGCAGTGCACGTGGATTGTACTCG CACTTTTAGGGCTGGCGACCGCGTGGGGATCTGCTTAGCAAACCTTGACG CAAAGCTCCTGGAGAGAGGCGAGGTGACAACGCCAGGCACTGGACAGCCC ATTTCATCTGCCGTTGCTCTCATTCGAAAGGTAGGAAGAGCTTGTTTTAT CGAATGCCATACGAGCATCAAATGTCGACCGACAGGATATATGTTGGTCT TGTGTCATAACTTTGCAGCTCTCGTGATAAAGGTGAATACCAGATATGCA TACCAGATACTGATCAGGAAGCGTGCTGTATTTGTGCACTTGTGTTTGTG TTGATGCTTGTCTTGTATCGTGGCGTCAGGTGCCAGCTTTTCGCGGGCGC TGTCGGAGTGGAAGCTACTGCCACGTTTCTTTGGGGCACACGACCGTCAT AGCCACCGCAACTTTTTTCGGAGCGAGCGAACTCAAAAACCAACGACGGG AGCTTTTCTGGGATGTCGGTGTCGGTGCCGGAGTAGTCGAGTGTGGCGGA GGGAAAGAAACCACAAGCAGTGCCGAGGACGAAAACAAGCTGCTGGATAA GATGGCCTCTTCACCATTCCCATTCGACGCAGAATTCCTTCAGCAAGAGG ATCTCGTCGCTCATATATCTTCTCTCGGTCAAGATCCGAGCGTTGTTCAC GAAAGTCTTCCAAGCAATCCTAACCTAGTGGGGGGCACCCTTCAGTATTG TCATCTGGCATTTCACACACCGGTCATTGCGCCTCCTAGCAGCGTTGTGC TCGGGAGCAGATTGGACATTGCCAGTGACTTCGGGACTGGGGACTCTGAG GAATCAGAGGCAGGTAGCGATCATTGCCGAATCGCATTCTACGGGCGTTT AATTCCGGCAACCGGCGGCGGGGCCAAGGCCTCTATTAATAGCTGTAGCA AAGATCACCTGCAGATAGAGTTCGGAGTCAAAGCGGGGCAGATAAAAGTC TTCACGGAAAAGATTAAAACAGGAAGTATCTTTCGCGTGGGGGACGGAGA CGGTTCAAGGAAATCCGAGGTGGTGGTGTTGTGCAAGGATTTGTTCAAGA AGGAGACCAACACGGCACCTTTCTTGGGGATGATTTTAATGACGGAGGTA AGGACAAGCGTCTCAGTTATGTACATAACAGTACAGATACCTGGTATTTG GTACGCAGTAAAAGCTTAAAGGTCCCGAACGAGCGGTTCGCTGTATGCTT CATTCAAGGGATTATTGCAGTTATCATAAAGCCAATACATCTCCTTTGTA ATTCATCAACTCACTGCATCCCCGCGCTGATTCCATCTTATTCTGCAGCA CGGCAGCATGGGTCGCATTGAAAGTGCATTCGGAAAGGCTGGCAGGTTCA AGGCTCGCTTTCCTGCGGGGACCTCTGTCAAGGTGATAAAAAATAATAGC GTAATACTTTGAAAAAGTAGTTGGCATTCTCCACATAGTTTTTCGATTTT AATCTCACTTAATAATTACCTCGTATTATTGAGCAAGTACTTTTTACATC GTTTTCAGACAGCCGCTCTTTCCTCATGCACACATGCAGGCAGGGGACAC CCTTTTTCTCAAGTTCCGGAAATACCTTCGAGACCAATCGAAGCAGATGC ATCAAGGCTACCTTCAAAGAGCTCTCCAGGTGCATTTGACTGCTCAGGAT GCTCGTGAAATTCCGGATAAAGCTGGTTTCAGCGATTCGGACGCCGAGGC GCACGACGGTCCACCGTCAGATTCACGCAAAGGAGTGATCGACAGCGTCA GAATTGGGCAGGATTGTGGAGGAACCGTGGCCATTGTTTCTGGGCTGTTC TCTCAAGAGGAAGATATCCGAGCCCTGGCCAAGCAAGGGATAACCGTAAG AACTTCGTCCGGTGCCCGCGGTGAACTTCGCGGTCCTTTCGGAAAGTTGG GTAAATGTAAGGTAGAGTTTTCGCACGGTGTTTCACTACAGGTTGGTGAG TTCGTTCTAGGTCCACGGCGAACCGATGCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig89:71388..75320-

>mRNA_A-nodosum_M_contig89.7.1 ID=mRNA_A-nodosum_M_contig89.7.1|Name=mRNA_A-nodosum_M_contig89.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2145bp|location=Sequence derived from alignment at A-nodosum_M_contig89:71388..75320- (Ascophyllum nodosum dioecious)
ATGGACATGCTGGTCCTTGTAATAGATGCGACGAAGGGCATGCAAGCTCA
GACAGTCGAGTGCGTTGTGATTGGGGAGGCCGTAATGGCACATGATGCGG
ACGTGATCATCGTGCTGAATAAGGTGGATCTTATGTGTCAACAAGAGCGA
CAAGAAAGCCTAGGCGCAGTCAGGAAGGCTATTGAGGCTCGCCTGGCTCG
AACGAAGCTATCGAAGGCGTCGTTCGTGTCCTGTGCTGCAGCGGTTGGTG
GCGAGAAGACCGTGGCATCTGCATCTGTGCCCAAGGTCACAGGGGGTGGT
AGGGGCAAAGGTGAAGAGGCCAACAAGCCATCCGGGCTGAAGAAGGCTGC
TGCGGGTGGATCTGCATCGGCAATGGCATTTGGCGATAACCTCGGCACTG
GGAATGTCAATGGTCAAACCGGTCAACGCCTCGCTTCATCCCCTCAAGCA
TGTCGGGATGAAGCTGCAACGATGGGGATTGATTCGGTGGCCACGGAACT
AACGCGACGAGCAAAAATTCCCAGCAGGGTAACCTCTTCTAATCTATACT
TCGCCTTCGATCACTGCTTCTCCGTGCGAGGTCAAGGAACGATTCTTACA
GGCACCGTGCTTCGAGGAGAAGTCAAGATCAACCAACTAGTGGAGCTGCC
AGCGCTGCGGGTCTTGAAGAGGGTCAAGTCCATGCAGATGTTCCGCAAAC
CTGTCTCTATGGCCAGGCACGCACGGGTGGCTGGCGACCGCGTGGGGATC
TGCTTAGCAAACCTTGACGCAAAGCTCCTGGAGAGAGGCGAGGTGACAAC
GCCAGGCACTGGACAGCCCATTTCATCTGCCGTTGCTCTCATTCGAAAGG
TGCCAGCTTTTCGCGGGCGCTGTCGGAGTGGAAGCTACTGCCACGTTTCT
TTGGGGCACACGACCGTCATAGCCACCGCAACTTTTTTCGGAGCGAGCGA
ACTCAAAAACCAACGACGGGAGCTTTTCTGGGATGTCGGTGTCGGTGCCG
GAGTAGTCGAGTGTGGCGGAGGGAAAGAAACCACAAGCAGTGCCGAGGAC
GAAAACAAGCTGCTGGATAAGATGGCCTCTTCACCATTCCCATTCGACGC
AGAATTCCTTCAGCAAGAGGATCTCGTCGCTCATATATCTTCTCTCGGTC
AAGATCCGAGCGTTGTTCACGAAAGTCTTCCAAGCAATCCTAACCTAGTG
GGGGGCACCCTTCAGTATTGTCATCTGGCATTTCACACACCGGTCATTGC
GCCTCCTAGCAGCGTTGTGCTCGGGAGCAGATTGGACATTGCCAGTGACT
TCGGGACTGGGGACTCTGAGGAATCAGAGGCAGGTAGCGATCATTGCCGA
ATCGCATTCTACGGGCGTTTAATTCCGGCAACCGGCGGCGGGGCCAAGGC
CTCTATTAATAGCTGTAGCAAAGATCACCTGCAGATAGAGTTCGGAGTCA
AAGCGGGGCAGATAAAAGTCTTCACGGAAAAGATTAAAACAGGAAGTATC
TTTCGCGTGGGGGACGGAGACGGTTCAAGGAAATCCGAGGTGGTGGTGTT
GTGCAAGGATTTGTTCAAGAAGGAGACCAACACGGCACCTTTCTTGGGGA
TGATTTTAATGACGGAGCACGGCAGCATGGGTCGCATTGAAAGTGCATTC
GGAAAGGCTGGCAGGTTCAAGGCTCGCTTTCCTGCGGGGACCTCTGTCAA
GGCAGGGGACACCCTTTTTCTCAAGTTCCGGAAATACCTTCGAGACCAAT
CGAAGCAGATGCATCAAGGCTACCTTCAAAGAGCTCTCCAGGTGCATTTG
ACTGCTCAGGATGCTCGTGAAATTCCGGATAAAGCTGGTTTCAGCGATTC
GGACGCCGAGGCGCACGACGGTCCACCGTCAGATTCACGCAAAGGAGTGA
TCGACAGCGTCAGAATTGGGCAGGATTGTGGAGGAACCGTGGCCATTGTT
TCTGGGCTGTTCTCTCAAGAGGAAGATATCCGAGCCCTGGCCAAGCAAGG
GATAACCGTAAGAACTTCGTCCGGTGCCCGCGGTGAACTTCGCGGTCCTT
TCGGAAAGTTGGGTAAATGTAAGGTAGAGTTTTCGCACGGTGTTTCACTA
CAGGTTGGTGAGTTCGTTCTAGGTCCACGGCGAACCGATGCTTGA
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