mRNA_A-nodosum_M_contig885.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig885.25.1
Unique NamemRNA_A-nodosum_M_contig885.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig885.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig885contigA-nodosum_M_contig885:269493..270302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870297.758622-UTR-A-nodosum_M_contig885:269492..2697541680870297.758622-UTR-A-nodosum_M_contig885:269492..269754Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig885 269493..269754 -
1680870297.7912025-UTR-A-nodosum_M_contig885:270225..2703021680870297.7912025-UTR-A-nodosum_M_contig885:270225..270302Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig885 270226..270302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870297.7714112-CDS-A-nodosum_M_contig885:269754..2702251680870297.7714112-CDS-A-nodosum_M_contig885:269754..270225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig885 269755..270225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig885.25.1prot_A-nodosum_M_contig885.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig885 269755..270225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig885.25.1

>prot_A-nodosum_M_contig885.25.1 ID=prot_A-nodosum_M_contig885.25.1|Name=mRNA_A-nodosum_M_contig885.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=157bp
MASLIPHPYMLEVTLVRSDNTPAMTGSYFVQFLEEWNLDEDVMIVKEGRQ
NIPLTSHEYTQISPGALLGISNGPMRSITLENTRLQEPIRRTDVATIRKS
SQLDEGRGEESDRREEPPVTLGVHLPAPQRELMRPRRRGTTTHRSEHFWE
VQYNLF*
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mRNA from alignment at A-nodosum_M_contig885:269493..270302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig885.25.1 ID=mRNA_A-nodosum_M_contig885.25.1|Name=mRNA_A-nodosum_M_contig885.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at A-nodosum_M_contig885:269493..270302- (Ascophyllum nodosum dioecious)
AAAAACCAAAAGCGGTGGCATTGATTCAAGCAGAGGATAAAGAAAACGAT
TTTCACTTGCGATATGTGGGCAAAGAAATGGCAAGTCTGATACCTCACCC
GTACATGCTGGAGGTAACACTTGTGAGGTCAGATAATACACCCGCAATGA
CAGGATCGTACTTCGTACAATTTCTTGAAGAATGGAATTTGGACGAGGAT
GTAATGATTGTGAAAGAGGGAAGGCAAAATATTCCTCTTACGTCACATGA
GTATACACAAATTTCTCCGGGCGCACTCCTGGGTATATCAAACGGCCCGA
TGCGATCGATAACTCTGGAAAATACCAGATTACAGGAGCCCATTAGGAGG
ACGGACGTGGCGACAATCAGGAAAAGCAGCCAACTGGACGAGGGCCGGGG
CGAGGAGAGCGATCGGAGGGAGGAGCCACCGGTTACGCTCGGAGTTCACC
TGCCCGCCCCACAACGAGAGCTGATGAGGCCAAGACGAAGAGGGACGACA
ACGCATCGGAGCGAGCACTTCTGGGAGGTCCAGTATAATTTGTTTTGACA
GGTGGACGTCGAGCCTCGAGCGCAAGATCAAGAGTATCCTCTCTCCAGTT
CAGCGTAGAAGACGTTTACGGGCGGAACGCTGCCAGAAGACCGTCCCATC
TTGAAGATATCAGCCGGCCAAGACAAGCATCGGTGGGCTGACATTTGTAA
TGATGAATCCAACGCTGGGGCCGTAGAAAGTATTTATGTTTGGGCCTGCG
AGGAATTCATCTTGATTGAGCATAAACAGTTAGCGGAAGAGTGTTTGGTA
CTGTAACCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig885:269493..270302-

>mRNA_A-nodosum_M_contig885.25.1 ID=mRNA_A-nodosum_M_contig885.25.1|Name=mRNA_A-nodosum_M_contig885.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=471bp|location=Sequence derived from alignment at A-nodosum_M_contig885:269493..270302- (Ascophyllum nodosum dioecious)
ATGGCAAGTCTGATACCTCACCCGTACATGCTGGAGGTAACACTTGTGAG
GTCAGATAATACACCCGCAATGACAGGATCGTACTTCGTACAATTTCTTG
AAGAATGGAATTTGGACGAGGATGTAATGATTGTGAAAGAGGGAAGGCAA
AATATTCCTCTTACGTCACATGAGTATACACAAATTTCTCCGGGCGCACT
CCTGGGTATATCAAACGGCCCGATGCGATCGATAACTCTGGAAAATACCA
GATTACAGGAGCCCATTAGGAGGACGGACGTGGCGACAATCAGGAAAAGC
AGCCAACTGGACGAGGGCCGGGGCGAGGAGAGCGATCGGAGGGAGGAGCC
ACCGGTTACGCTCGGAGTTCACCTGCCCGCCCCACAACGAGAGCTGATGA
GGCCAAGACGAAGAGGGACGACAACGCATCGGAGCGAGCACTTCTGGGAG
GTCCAGTATAATTTGTTTTGA
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