prot_A-nodosum_M_contig8822.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8822.6.1
Unique Nameprot_A-nodosum_M_contig8822.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length192
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8822.6.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.350e-22
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   60 QAPKQPLMATRSLQKVIKTAISRATTDDRYASAAGLILPACPFGNPPLEAVVRAATCATAHICRLLECKADAWPMREFAVVVSSVDQSGDVDDHRKKVAFVQGAARPAVGEQLRSP 175
            +AP+ PL+ATR LQ+++ TA+SRATTDDRYA A GL LP   + +PPL  VV AA  AT H+C LL  ++ AWP+ EFA   + V         R+++ +V GAAR A GE   SP
Sbjct: 1454 RAPRHPLVATRCLQELLNTAVSRATTDDRYADAVGLPLPPSRYEDPPLGCVVEAANRATEHVCHLLVRRSSAWPIAEFAATATVVHGR-----QRREMMYVPGAARAAGGEIAGSP 1564
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8822.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G867_ECTSI1.350e-2249.14PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8822contigA-nodosum_M_contig8822:10354..10929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8822.6.1mRNA_A-nodosum_M_contig8822.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8822 9496..11691 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8822.6.1 ID=prot_A-nodosum_M_contig8822.6.1|Name=mRNA_A-nodosum_M_contig8822.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=192bp
MLLPDCLYENWKFSERCSARAIWRSANGCRLSDILLTLELNETNKKRLGG
VLRIYTTPGQAPKQPLMATRSLQKVIKTAISRATTDDRYASAAGLILPAC
PFGNPPLEAVVRAATCATAHICRLLECKADAWPMREFAVVVSSVDQSGDV
DDHRKKVAFVQGAARPAVGEQLRSPQFCLPHTLFIDLYSYE*
back to top