mRNA_A-nodosum_M_contig8822.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8822.6.1
Unique NamemRNA_A-nodosum_M_contig8822.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8822.6.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.110e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 1 
Query: 1036 QAPKQPLMATRSLQKVIKTAISRATTDDRYASAAGLILPACPFGNPPLEAVVRAATCATAHICRLLECKADAWPMREFAVVVSSVDQSGDVDDHRKKVAFVQGAARPAVGEQLRSP 1383
            +AP+ PL+ATR LQ+++ TA+SRATTDDRYA A GL LP   + +PPL  VV AA  AT H+C LL  ++ AWP+ EFA   + V         R+++ +V GAAR A GE   SP
Sbjct: 1454 RAPRHPLVATRCLQELLNTAVSRATTDDRYADAVGLPLPPSRYEDPPLGCVVEAANRATEHVCHLLVRRSSAWPIAEFAATATVVHGR-----QRREMMYVPGAARAAGGEIAGSP 1564
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8822.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G867_ECTSI3.110e-1949.14PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8822contigA-nodosum_M_contig8822:9496..11691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G867
PFAMsSAC3_GANP
Model size2196
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.22e-23
EggNOG OGsCOG5079@1|root,KOG1860@2759|Eukaryota
DescriptionmRNA transport
Cds size576
COG categoryDU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.2886364-UTR-A-nodosum_M_contig8822:9495..103531680870292.2886364-UTR-A-nodosum_M_contig8822:9495..10353Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8822 9496..10353 +
1680870292.3153508-UTR-A-nodosum_M_contig8822:10929..116911680870292.3153508-UTR-A-nodosum_M_contig8822:10929..11691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8822 10930..11691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.3027897-CDS-A-nodosum_M_contig8822:10353..109291680870292.3027897-CDS-A-nodosum_M_contig8822:10353..10929Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8822 10354..10929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8822.6.1prot_A-nodosum_M_contig8822.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8822 10354..10929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8822.6.1

>prot_A-nodosum_M_contig8822.6.1 ID=prot_A-nodosum_M_contig8822.6.1|Name=mRNA_A-nodosum_M_contig8822.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=192bp
MLLPDCLYENWKFSERCSARAIWRSANGCRLSDILLTLELNETNKKRLGG
VLRIYTTPGQAPKQPLMATRSLQKVIKTAISRATTDDRYASAAGLILPAC
PFGNPPLEAVVRAATCATAHICRLLECKADAWPMREFAVVVSSVDQSGDV
DDHRKKVAFVQGAARPAVGEQLRSPQFCLPHTLFIDLYSYE*
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mRNA from alignment at A-nodosum_M_contig8822:9496..11691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8822.6.1 ID=mRNA_A-nodosum_M_contig8822.6.1|Name=mRNA_A-nodosum_M_contig8822.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2196bp|location=Sequence derived from alignment at A-nodosum_M_contig8822:9496..11691+ (Ascophyllum nodosum dioecious)
CAAGCAGGAAGGTGCCGACGGGTGAGCCAACTGGAAGTATCGAAGCCTCC
CTAAATCCCTAAATCCCCAACGGATGCATGTGTGCGTGAACCGCATCAGC
ATAGAGGAAGGGAGCCGGCTTGGGTCATCGCTCGAGCTTTCGCAAGCTCT
CCAGGCGACCAGCTTGGTGGTTTTTGCAGCAACTCCCAGGGATCAAGATC
GCTTCTTTTGGTCGCCTCTCCACCCTAAGGTCAAAGTGAAGCCGGCGTTG
CACGGCGAGATGGAACGTTTAGGCGACTCGTTCACGTTCCGTTCAATAGC
ACTTTATTGGGTTTCAGTGTTTGTATTTGTATGCGCCAACGTTTCACGTC
GTGCGTGATGTACTATCAAAACTACTGTCTTGCTTTCTTTGCTGTCGGCG
TGTTTGCTTTGCCCTGGTTCGCATCCATCGGTCCATCGGCAGCCGGACTA
GTCGAATACGAGGCAAGACCTCGGGTGCGCTCTCCGGTGTACCGACTCGG
AGTGCGGGGCGGTTCCTTTGCTGATGGTGATATCTGTTAAGGATTCAGTA
CTGAACGGAGGTGAGAAAAAAGGGTCAGGCCCCGCCAGCTTGCGGGAATG
CGTTTTGGAGGATTGCTTGAGAGGGGCTTGGCCTGCGAGAAGTGGCCCGG
CGGGGAGTCGGCGTCCGCGTGACATTGGTTGGACTCCACGAGTTCGAGAG
CAGGTCGAAGGAAGCTGCGGCTTCTCGAGAAGGTCTCGTCTTCAGTGAGG
AGGCAGAAAAGGCTTCGTCTGATGACCTGGCGACTAACGTGGCAGAACTC
TCAGGTGCATGGCTCTCTCCGTTGATGAGTTTAAATTTACAATCAAACCC
GCGGCAGCATGTTGCTTCCGGATTGTTTGTACGAAAACTGGAAATTTTCG
GAAAGATGCAGCGCGAGAGCCATTTGGCGATCTGCCAATGGCTGTAGACT
GAGTGACATTTTACTGACTCTCGAGTTAAATGAAACGAATAAGAAACGAC
TTGGTGGCGTTCTTCGCATTTACACTACTCCAGGGCAAGCTCCGAAGCAG
CCTCTGATGGCAACGCGCTCACTCCAGAAGGTGATCAAGACGGCGATTTC
CCGAGCTACAACGGACGATCGATACGCTAGTGCCGCGGGCCTCATCCTGC
CTGCGTGCCCCTTCGGGAATCCTCCGTTGGAGGCCGTCGTAAGGGCGGCA
ACCTGCGCAACGGCGCATATATGTCGTCTCCTCGAATGCAAGGCTGATGC
GTGGCCTATGCGGGAATTCGCCGTTGTGGTGAGCTCTGTGGATCAGTCCG
GTGATGTTGACGATCATCGCAAGAAGGTCGCTTTCGTTCAGGGTGCGGCA
CGGCCTGCGGTGGGAGAACAATTGAGGTCGCCGCAATTCTGCCTGCCACA
CACACTCTTCATCGACCTGTACTCCTATGAATAGTTTGAATTCACCAAGT
GATGCAACCGTCCCCATATACACACCCCCCATTTCCGCCTCCACGTCGCC
TTTACCACCCATCAGACAGTTCACGCACCCCAGAGGGCAGCCGCAGATCC
CCGCTAGGATCAGGGTCCACGCCAAGAACGTCCCGGAGCCGGCCCACGGT
GGCATGGCTGATGCCCCCTCGTGTCGTAGCCCTCCCGACGGTACTTCCGA
CTCGTGGAGGGGCTTATACTGTGGTCGACCGCGTGAATGCCCTTCTTGCG
CTGTCGACGCCACTTCCAGTACGACCCGACGAGGTGGTTCTCGGTGGGAG
GCCACGTTTCCTCGAACGACAAGTGCGGCAGAGTTCCGCGCCTAGAACCC
ATCATTTTCTTTTTCGAGTCGACGTCACGTGCGTGGGAGAGGGGGCGTTG
CGGGTGGGGGGAGTCACGGAGCCACGATGGCTTCCAACGTTGGTGAAGAT
CGTAGAGTATTAATACAAGTGTATTATAACAGGTTAAAATTAGACCACAG
GCACGTTGTGAGGTTCTAAAACGTGACAGAAAATGGAGCAGACTCATGCA
CCAAAATAAAAGGCACCAAAACGAGAACGCCTTCCATTGATGGACCTTTT
TTGTTTCCCCCACCAGAGCGAAAGGCAGCCGAGGCAGAGTCGTGTCAAAA
CACAATATTTACATGCAGTCTATCTAAATCAGTATCTATATATAATATGT
ACCAGGGTATGTATAAATATAATGTACATATTACAGTAACAGAAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8822:9496..11691+

>mRNA_A-nodosum_M_contig8822.6.1 ID=mRNA_A-nodosum_M_contig8822.6.1|Name=mRNA_A-nodosum_M_contig8822.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at A-nodosum_M_contig8822:9496..11691+ (Ascophyllum nodosum dioecious)
ATGTTGCTTCCGGATTGTTTGTACGAAAACTGGAAATTTTCGGAAAGATG
CAGCGCGAGAGCCATTTGGCGATCTGCCAATGGCTGTAGACTGAGTGACA
TTTTACTGACTCTCGAGTTAAATGAAACGAATAAGAAACGACTTGGTGGC
GTTCTTCGCATTTACACTACTCCAGGGCAAGCTCCGAAGCAGCCTCTGAT
GGCAACGCGCTCACTCCAGAAGGTGATCAAGACGGCGATTTCCCGAGCTA
CAACGGACGATCGATACGCTAGTGCCGCGGGCCTCATCCTGCCTGCGTGC
CCCTTCGGGAATCCTCCGTTGGAGGCCGTCGTAAGGGCGGCAACCTGCGC
AACGGCGCATATATGTCGTCTCCTCGAATGCAAGGCTGATGCGTGGCCTA
TGCGGGAATTCGCCGTTGTGGTGAGCTCTGTGGATCAGTCCGGTGATGTT
GACGATCATCGCAAGAAGGTCGCTTTCGTTCAGGGTGCGGCACGGCCTGC
GGTGGGAGAACAATTGAGGTCGCCGCAATTCTGCCTGCCACACACACTCT
TCATCGACCTGTACTCCTATGAATAG
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