mRNA_A-nodosum_M_contig8821.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8821.1.1
Unique NamemRNA_A-nodosum_M_contig8821.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 201 bits (512), Expect = 2.700e-55
Identity = 99/264 (37.50%), Postives = 158/264 (59.85%), Query Frame = 1
Query:    1 PDEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            PD P TL +A+ SPEW  W+ A++ E  + +  G  ++ +  +E+ ++G++ VF +K  + G+V +YK R VA+GF QI G+ Y    SP     ++R  +A+ A+ DW  RQ+D+  A+L  ++ EE++++ PEG+ D   +V RL+  +YGL  AG +W+KK   +L   GF R+ ADPCV+     GK+  I+ V+VDDI++  +S+     T+  L+  F +KDLGE    LG  I R+ K +T+   Q+ Y  T  ERF
Sbjct:  852 PDVPKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERF 1114          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 198 bits (503), Expect = 4.370e-54
Identity = 101/263 (38.40%), Postives = 157/263 (59.70%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            DEP +L EA+ SPEWP+W  A+K E D+    G  ++ D PK++  +G K VF+RK  ++G+V KYK R VA+G+ QI G+ +    +P     SIR +LA+  + +W   Q+DV  A+L  D+ EE+Y++ PEG+ D   ++ RL+K +YGL  +G  W++K   EL   G++R +ADPCV+        V II V+VDD+L+ + S +   +   DL+  F + DLGE    +G  I RD +A  +   QQ Y ++  +R+
Sbjct:  905 DEPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRY 1167          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 187 bits (476), Expect = 1.830e-50
Identity = 103/257 (40.08%), Postives = 148/257 (57.59%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQ 774
            DEP T  EA   P+  +W+ A   E+   +   +   V+RP+ + V+  K VFK K G DG +EKYK R VAKGF Q++G+ +    +P    +S+R +LA+ A LD    Q+DV  AFL  D+ EE+Y+K+P G+  S + V +L KA+YGL  AG  W KK   E    GF R  +D  VF +   G +++II +YVDD+L+LS++        EDL+S F + DLGE  + LG  ITRD   R +   Q +Y +
Sbjct:  924 DEPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVE 1179          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 187 bits (475), Expect = 2.270e-50
Identity = 102/257 (39.69%), Postives = 148/257 (57.59%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQ 774
            DEP T  EA   P+  +W+ A   E+   +   +   V+RP+ + V+  K VFK K G DG +EKYK R VAKGF Q++G+ +    +P    +S+R +LA+ A LD    Q+DV  AFL  D+ EE+Y+K+P G+R S + + +L KA+YGL  AG  W KK   E    GF R  +D  VF +   G +++II +YVDD+L+LS++        EDL+S F + DLGE  + LG  I RD   R +   Q +Y +
Sbjct:  601 DEPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVE 856          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 186 bits (472), Expect = 5.320e-50
Identity = 96/258 (37.21%), Postives = 152/258 (58.91%), Query Frame = 1
Query:   19 LHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            L +A+ SPEW +W  A+K E D+    G  ++ D PK +  +G K VF+RK  ++ +V KYK R VA+G+ QI G+ +    +P     SIR +LA+  + +W   Q+DV  A+L  D+ EE+Y++ PEG+ D   ++ RL+K +YGL  +G  W++K   EL+  G++R +ADPCV+        V II V+VDD+L+ + S +   +   DL+  F + DLGE    +G  I RD +A T+   QQ Y ++  +R+
Sbjct:  715 LTKAQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESILKRY 972          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 184 bits (468), Expect = 2.110e-49
Identity = 96/261 (36.78%), Postives = 151/261 (57.85%), Query Frame = 1
Query:   10 PTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            P ++ EA+ SPEW +W+ A+  EM      G     D P  +  +G K VF +K  +DG + +YK R VA+G+ QI G+ Y    +P     S+R  L + A+ D    Q+DV  A+L  ++ EE+Y++ PEGY D   +V RL+K +YGL  +G  W+++F  +L   GF + +AD CV++R   G++  II V+VDD+L+ SE+ +D  +T  +L + F +KDLGE    +G  I RD +  T+   Q++Y +    RF
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRF 1138          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: Q02902_ARATH (Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q02902_ARATH)

HSP 1 Score: 176 bits (446), Expect = 2.210e-48
Identity = 98/267 (36.70%), Postives = 157/267 (58.80%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVE--KYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGY--RDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            +EP +  EA  + EW +W+ A   EMD  I  G   +VD+PK++ ++G + +FK K G  G VE  +YK R VAKG+ Q +G+ YQ + +P    +SIRI+++V+   D    Q+DV  AFL  ++ EELY++ P+G+   D  N+V  L+K++YGL  +   W+K+F   +I + F RS+ D CV+ ++   +  + +++YVDD+L+  +SK + ++  E L   F +KD+G  S  LG  I RD K   +   Q RY     +RF
Sbjct:   69 EEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPG-VEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPDGFISEDGENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRF 334          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 177 bits (448), Expect = 9.950e-47
Identity = 98/266 (36.84%), Postives = 158/266 (59.40%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDG-RVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSP--NQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            +EP+  HEA+ S +W +W G +  EM+     G   +VDRPK+K V+G++ +++ K G  G   E++K R VA+GF Q +GI YQ + +P     SIRI+++++   D    Q+DV  AFL  ++ EELY++ PEG+   P  +QV  L+K++YGL  A   W+KKF   ++ + F RS  DPCV+ +    +  + +++YVDD+L+ ++S  + ++   +L   F +KDLG  S  LG  ITR+ K  T+   Q  Y +   +RF
Sbjct:  835 EEPSCYHEARRSKDWVKWNGGMTEEMESLWKNGTWIIVDRPKDKKVIGSRWLYRLKSGIPGVESERHKARVVARGFTQKEGIDYQEVFAPVVKHLSIRILMSLVVKEDLELEQMDVKTAFLHGELEEELYMEQPEGFVVDPKKDQVCLLKKSLYGLKQAPRQWNKKFNAFMMSQKFTRSGHDPCVYVKEVGDEEFIYLLLYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRF 1100          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 175 bits (444), Expect = 3.280e-46
Identity = 100/262 (38.17%), Postives = 146/262 (55.73%), Query Frame = 1
Query:    4 DEPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAER 789
            DEP T  EA   P+   W+ A+  E+       +   V+RP+++ V+  K VFK K G DG ++KYK R VAKGF Q++GI +    +P    +S+R +LA+ A LD    Q+DV  AFL  D+ EE+Y+  P G+R + N + RL+KA+YGL  A   W K+   E    GF   ++D  VF +   G  +VII +YVDD+L+LS+     +    +L+S F + DLGE  + L   I RD   R +   Q +Y + A ER
Sbjct:  622 DEPQTYEEAMARPDTVHWKAAMAEELHAFAKAELYDEVERPRDRKVVDCKWVFKIKRGPDGEIKKYKARLVAKGFTQVEGIDFTETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLEEEIYMNAPPGFRLNANIIWRLRKALYGLKQASREWYKRIRAEFERLGFTMCESDHSVFYKVDNG-TLVIIAIYVDDMLILSDDIDAVNTLKANLKSRFEMTDLGEARWILSMEILRDRPRRLLELSQHQYVEKALER 882          
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Match: A0A4Y2Q6W6_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q6W6_ARAVE)

HSP 1 Score: 171 bits (433), Expect = 3.790e-46
Identity = 96/267 (35.96%), Postives = 147/267 (55.06%), Query Frame = 1
Query:    7 EPTTLHEAKVSPEWPQWRGALKREMDRQIARGV*KVVDRPKEKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQGLSSPTPTQSSIRIVLAVLALLDWRRRQLDVVMAFLGADVTEELYVKLPEGYR--DSPNQVGR---LQKAIYGLMHAGLLWSKKFGGELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTLEDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERF 792
            EP T+ EA    +   W+ ++   +   I     ++VD+P+ K ++  K VFK K    G +E+YK R VAKGF QI+G+ Y    SP    +++R++LA  A+ DW   QLD V+AF+   + EE+Y+K+PEG    D  N  G+   L KA+ GL  +G +W +     L+   F +S  D C + +    K +VI+ +YVDD+L+ S S + ++   E L S+F +KDLG  SY LG  I RD K   V  +Q +Y +    R+
Sbjct:   23 EPKTIDEAVNGVDRNHWKDSISETILSHIKNKTREIVDKPENKNIIKCKWVFKIKHNSKGEIERYKTRLVAKGFSQIEGVDYNETFSPVVRYATLRVLLAFAAIYDWEIDQLDAVIAFVQGTLDEEIYMKIPEGLNEYDQENLEGKVLKLNKALDGLKQSGRVWYQMLENGLVEMDFRQSSFDSCAYIKVDQNKDIVIVTIYVDDLLIFSNSVKLKNWVKEQLTSTFKMKDLGTASYCLGIKIERDRKNGYVSVNQTQYVEGVLRRY 289          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C3AKI0_9AGAM2.700e-5537.50Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A401GYH9_9APHY4.370e-5438.40Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401G4V0_9APHY1.830e-5040.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY2.270e-5039.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H727_9APHY5.320e-5037.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A284QR88_ARMOS2.110e-4936.78Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
Q02902_ARATH2.210e-4836.70Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxI... [more]
A0A6D2J0E6_9BRAS9.950e-4736.84Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
A0A8H7NTQ9_9APHY3.280e-4638.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y2Q6W6_ARAVE3.790e-4635.96Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8821contigA-nodosum_M_contig8821:16432..17226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra71619
Model size795
Max annot lvl164328.Phyra71619|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.51e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size444
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.1956708-CDS-A-nodosum_M_contig8821:16431..168751680870292.1956708-CDS-A-nodosum_M_contig8821:16431..16875Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8821 16432..16875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.2105389-UTR-A-nodosum_M_contig8821:16875..172261680870292.2105389-UTR-A-nodosum_M_contig8821:16875..17226Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8821 16876..17226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8821.1.1prot_A-nodosum_M_contig8821.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8821 16432..16875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8821.1.1

>prot_A-nodosum_M_contig8821.1.1 ID=prot_A-nodosum_M_contig8821.1.1|Name=mRNA_A-nodosum_M_contig8821.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=148bp
MAFLGADVTEELYVKLPEGYRDSPNQVGRLQKAIYGLMHAGLLWSKKFGG
ELIVEGFERSQADPCVFRRRHPGKVVVIIVVYVDDILVLSESKQDEHQTL
EDLRSSFPIKDLGEISYYLGCHITRDCKARTVMFDQQRYAQTAAERFK
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mRNA from alignment at A-nodosum_M_contig8821:16432..17226-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8821.1.1 ID=mRNA_A-nodosum_M_contig8821.1.1|Name=mRNA_A-nodosum_M_contig8821.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at A-nodosum_M_contig8821:16432..17226- (Ascophyllum nodosum dioecious)
CCGGACGAGCCCACCACCCTGCACGAGGCTAAGGTGTCCCCTGAGTGGCC GCAATGGCGCGGCGCGCTCAAGCGCGAGATGGACCGCCAGATTGCGCGTG GTGTGTAGAAGGTCGTCGACCGACCCAAAGAAAAAACCGTACTCGGCACC AAGACCGTTTTTAAACGGAAGGTCGGCCAGGATGGCCGTGTAGAAAAGTA CAAGTGCCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATCCATT ACCAAGGGTTGTCGTCGCCGACACCTACACAGTCGAGCATCCGGATAGTG CTGGCGGTGCTGGCCCTGTTGGACTGGAGGAGGCGGCAGCTTGACGTAGT AATGGCGTTTCTCGGGGCGGATGTTACGGAGGAGCTTTACGTTAAGCTCC CCGAGGGGTATCGCGACTCGCCGAACCAAGTTGGACGACTGCAGAAGGCC ATATACGGCCTAATGCACGCCGGACTACTGTGGTCAAAGAAGTTCGGCGG AGAGCTGATAGTGGAGGGGTTTGAGAGGTCCCAAGCCGATCCCTGCGTGT TCCGGCGGAGGCATCCAGGGAAAGTCGTCGTCATCATCGTAGTCTACGTC GACGATATACTAGTGCTGAGCGAATCGAAGCAGGATGAGCATCAGACGCT GGAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGT ACTACCTGGGATGCCATATTACTCGGGACTGCAAGGCGAGGACGGTGATG TTCGATCAGCAGCGTTACGCGCAGACGGCAGCCGAGCGATTCAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8821:16432..17226-

>mRNA_A-nodosum_M_contig8821.1.1 ID=mRNA_A-nodosum_M_contig8821.1.1|Name=mRNA_A-nodosum_M_contig8821.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at A-nodosum_M_contig8821:16432..17226- (Ascophyllum nodosum dioecious)
ATGGCGTTTCTCGGGGCGGATGTTACGGAGGAGCTTTACGTTAAGCTCCC
CGAGGGGTATCGCGACTCGCCGAACCAAGTTGGACGACTGCAGAAGGCCA
TATACGGCCTAATGCACGCCGGACTACTGTGGTCAAAGAAGTTCGGCGGA
GAGCTGATAGTGGAGGGGTTTGAGAGGTCCCAAGCCGATCCCTGCGTGTT
CCGGCGGAGGCATCCAGGGAAAGTCGTCGTCATCATCGTAGTCTACGTCG
ACGATATACTAGTGCTGAGCGAATCGAAGCAGGATGAGCATCAGACGCTG
GAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGTA
CTACCTGGGATGCCATATTACTCGGGACTGCAAGGCGAGGACGGTGATGT
TCGATCAGCAGCGTTACGCGCAGACGGCAGCCGAGCGATTCAAA
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