mRNA_A-nodosum_M_contig8812.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8812.4.1
Unique NamemRNA_A-nodosum_M_contig8812.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.840e-26
Identity = 87/184 (47.28%), Postives = 106/184 (57.61%), Query Frame = 2 
Query:  647 LSKLVRLDVVAFAEDDSEGEDDIAEPGGEGWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARA---GSLAVSREKRDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEEIATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSVSLVACL 1189
            L +L +LD V FA +DS+ ED     GG       G   + +DRSLKL AQFLR LACRAGVLGGVFARA   G  +       D    MDV D+EGG   G G+G G             V GH+ RRL+ ++ RLV++  LL   DRGLAC+ L QLWLA +GPGQ DNLS +  VSL   +
Sbjct:   20 LKQLAQLDEVGFAGEDSDEED-----GGNDSPGARGTDSYGKDRSLKLEAQFLRTLACRAGVLGGVFARARQQGDASPGSTGGSDGVVGMDV-DEEGGHVAGKGKG-GXXXXXXXXXXXXXVPGHLMRRLQSLSLRLVENYALLGNKDRGLACQGLCQLWLAFSGPGQGDNLSRMKGVSLAGTM 196
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BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.470e-25
Identity = 84/173 (48.55%), Postives = 103/173 (59.54%), Query Frame = 2 
Query:  662 RLDVVAFAEDDSEGEDDIAEPGGEGWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARA---GSLAVSREKRDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEEIATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSV 1171
            +LD V FA +DS+ ED     GG G     G   + +D+SLKL AQFLR LACRAGVLGGVFAR    G  +       D    MDV D+EGG   G G+G G             V GH+ RRL+ ++ RLV++  LLS  DRGLAC+ L QLWLAL+GPGQ DNLS ++ V
Sbjct:  430 QLDEVGFAGEDSDEED-----GGNGSPGARGTDSYGKDKSLKLEAQFLRTLACRAGVLGGVFARERQQGDASPGLTGGGDGVVGMDV-DEEGGPVAGKGKGGGVXXXXXX-XXXXXVPGHLMRRLQSLSLRLVENYALLSSKDRGLACQGLCQLWLALSGPGQGDNLSRMLGV 595
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE1.840e-2647.28NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKP7_ECTSI5.470e-2548.55Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8812contigA-nodosum_M_contig8812:19577..21486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKP7
PFAMsFAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size1910
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.58e-29
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size675
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870291.7649612-UTR-A-nodosum_M_contig8812:19576..201591680870291.7649612-UTR-A-nodosum_M_contig8812:19576..20159Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8812 19577..20159 +
1680870291.7982268-UTR-A-nodosum_M_contig8812:20834..214861680870291.7982268-UTR-A-nodosum_M_contig8812:20834..21486Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8812 20835..21486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870291.7831075-CDS-A-nodosum_M_contig8812:20159..208341680870291.7831075-CDS-A-nodosum_M_contig8812:20159..20834Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8812 20160..20834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8812.4.1prot_A-nodosum_M_contig8812.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8812 20160..20834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8812.4.1

>prot_A-nodosum_M_contig8812.4.1 ID=prot_A-nodosum_M_contig8812.4.1|Name=mRNA_A-nodosum_M_contig8812.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=225bp
MLRPPPTPPLPYISAFSDWSPLSKLVRLDVVAFAEDDSEGEDDIAEPGGE
GWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARAGSLAVSREK
RDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEE
IATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSVSLVA
CLVVDAHAQQMSPQDSRVLSACAC*
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mRNA from alignment at A-nodosum_M_contig8812:19577..21486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8812.4.1 ID=mRNA_A-nodosum_M_contig8812.4.1|Name=mRNA_A-nodosum_M_contig8812.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1910bp|location=Sequence derived from alignment at A-nodosum_M_contig8812:19577..21486+ (Ascophyllum nodosum dioecious)
CTGCGGCGGCCACCGCCCTGAGCTCGTACGAGGAAGTCACGAACGTGACG
GATCGTCTCTTGGCTTGCTTGAATTCAGCAGTGAGCGCCGGCGGATACCG
TATTTGAAGTAATTCCACACAGTCCCTTGGGAATAAGGACGTTTGGATAT
ATTTTTGTCCGTTAGCACTGTATATCACACTGGGAATCACTTTCATTTCG
CAGAGAGAACGCACGATACCTGCATTAAAAAAGCAAGAAGAAAAAAAGAG
AAAAAAAAAAAAAATCGTTGGCTTGGTCAATATGTTACCAGGAGTTGCCA
CATCGGGGTCGTTATTTTTTCGAAGTTTCTTGTTGCCAGTCGAGACTGGT
TTGAGCACCTAAGAGTGGATTGGGGCCAAGGAGTACACGTGGACAGCCCC
CTCCAGATTCTCTCGGCCTAAACCCGCCATCGGGAGGGTATTTTTTTCTC
GAAATGATGCTCACTCGACCGAACCAAGGCAAAAACTGGAGGCATGCGCG
TCCGCCAGGCGGCAGGCGAGAGTTTTTCTCTATTTCGACAGGCGCTCACA
CCAAATTGGCAGGCATTGGTGCGTCTGTAACGCATGCTTCGCCCTCCCCC
CACCCCTCCTCTTCCCTATATTTCCGCGTTCTCTGATTGGTCCCCCTTGA
GCAAGCTGGTCAGGTTGGACGTGGTTGCTTTCGCTGAGGATGATTCCGAA
GGAGAAGATGATATCGCGGAACCTGGAGGGGAAGGTTGGGGACAGGATGA
CGGCGTTGCTCTGTTCAGCCGAGACCGATCCCTCAAGCTGAGAGCTCAGT
TCCTGCGCGCGTTGGCGTGCAGGGCGGGGGTCCTGGGAGGCGTTTTCGCA
AGAGCGGGGAGTTTAGCCGTGTCGCGCGAGAAAAGAGACGATACCTGTAG
CGCAATGGATGTGGAGGACGATGAAGGGGGAGAACAGGAGGGGGGTGGTC
GAGGCAAGGGTAAGCAAGGGCGTGCTCCCGACGGAGCCACCGGGGCTGCC
GTCTACGGCCACGTTACGAGGAGGCTGGAAGAGATTGCGACGAGGCTGGT
CCAGTCTTGCGACCTGCTTAGCCGAAACGACCGGGGGCTGGCGTGTCGAG
CCCTCGCACAGCTGTGGCTGGCGCTGGCGGGGCCTGGACAGAGTGACAAT
TTATCTTGCTTGGTGAGTGTGTCACTCGTGGCTTGTCTCGTTGTGGATGC
GCACGCACAACAGATGAGTCCCCAGGACTCAAGGGTACTTTCTGCTTGCG
CTTGTTGAAGAGCACGGCGTCGCGCGAACAAAAAAACAGACGAACCGATG
GGATATAAGCAACATATATACTGCGGAGGTTTCGCTGTCGCAGAAAAATA
ATGGCTCTCTGTAGCTGGACGTGTGAAATAATCCGACCCATTCGACGGAA
GAATTGGAACATATGCCTATCTCTCGTGGTAACACTTTTTGCTATAATAA
TACAATAATAGCGACCGAAGGAGTTCGTTTACAGCGACCCAAGTGTTTTT
ATTCTCGAACGTCTAGCTATTAATAGCATTATTACGTCAAAAAAAAACTT
GGCGGAAAGAAAAGCCCGGCGTCTTGTGTGTCACAAGAAAACACGTGGCG
CGTCTGACTTTCATCTACTATCGTGCGTCCGTTGGCTTGGCAGCTCGCCA
GGTGAATCAGAACGCGCCTAGACCTTCTGAGCATGTTGTTTAAAGAAAAA
TCAGAACGCACCTAGACCTTCTCATTGCTTCTCACATTCAGCGTATTCGT
TGCCAACCCGGAAAAACTTATTACAATCGACTGCGATTCAACAATTTTGG
ATTGATTAATTGCTCACATTATTTAGCGTATTGTCCTTGCAACTGGAGAA
AATACGGTGACATAACGAGTCAGCCATCATAGAAGACCTATCAATGTCAT
GGAGAGTTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8812:19577..21486+

>mRNA_A-nodosum_M_contig8812.4.1 ID=mRNA_A-nodosum_M_contig8812.4.1|Name=mRNA_A-nodosum_M_contig8812.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=675bp|location=Sequence derived from alignment at A-nodosum_M_contig8812:19577..21486+ (Ascophyllum nodosum dioecious)
ATGCTTCGCCCTCCCCCCACCCCTCCTCTTCCCTATATTTCCGCGTTCTC
TGATTGGTCCCCCTTGAGCAAGCTGGTCAGGTTGGACGTGGTTGCTTTCG
CTGAGGATGATTCCGAAGGAGAAGATGATATCGCGGAACCTGGAGGGGAA
GGTTGGGGACAGGATGACGGCGTTGCTCTGTTCAGCCGAGACCGATCCCT
CAAGCTGAGAGCTCAGTTCCTGCGCGCGTTGGCGTGCAGGGCGGGGGTCC
TGGGAGGCGTTTTCGCAAGAGCGGGGAGTTTAGCCGTGTCGCGCGAGAAA
AGAGACGATACCTGTAGCGCAATGGATGTGGAGGACGATGAAGGGGGAGA
ACAGGAGGGGGGTGGTCGAGGCAAGGGTAAGCAAGGGCGTGCTCCCGACG
GAGCCACCGGGGCTGCCGTCTACGGCCACGTTACGAGGAGGCTGGAAGAG
ATTGCGACGAGGCTGGTCCAGTCTTGCGACCTGCTTAGCCGAAACGACCG
GGGGCTGGCGTGTCGAGCCCTCGCACAGCTGTGGCTGGCGCTGGCGGGGC
CTGGACAGAGTGACAATTTATCTTGCTTGGTGAGTGTGTCACTCGTGGCT
TGTCTCGTTGTGGATGCGCACGCACAACAGATGAGTCCCCAGGACTCAAG
GGTACTTTCTGCTTGCGCTTGTTGA
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