prot_A-nodosum_M_contig8812.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8812.4.1
Unique Nameprot_A-nodosum_M_contig8812.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length225
Homology
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BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.960e-30
Identity = 87/184 (47.28%), Postives = 106/184 (57.61%), Query Frame = 0 
Query:   22 LSKLVRLDVVAFAEDDSEGEDDIAEPGGEGWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARA---GSLAVSREKRDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEEIATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSVSLVACL 202
            L +L +LD V FA +DS+ ED     GG       G   + +DRSLKL AQFLR LACRAGVLGGVFARA   G  +       D    MDV D+EGG   G G+G G             V GH+ RRL+ ++ RLV++  LL   DRGLAC+ L QLWLA +GPGQ DNLS +  VSL   +
Sbjct:   20 LKQLAQLDEVGFAGEDSDEED-----GGNDSPGARGTDSYGKDRSLKLEAQFLRTLACRAGVLGGVFARARQQGDASPGSTGGSDGVVGMDV-DEEGGHVAGKGKG-GXXXXXXXXXXXXXVPGHLMRRLQSLSLRLVENYALLGNKDRGLACQGLCQLWLAFSGPGQGDNLSRMKGVSLAGTM 196
[Close]
BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.790e-28
Identity = 84/173 (48.55%), Postives = 103/173 (59.54%), Query Frame = 0 
Query:   27 RLDVVAFAEDDSEGEDDIAEPGGEGWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARA---GSLAVSREKRDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEEIATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSV 196
            +LD V FA +DS+ ED     GG G     G   + +D+SLKL AQFLR LACRAGVLGGVFAR    G  +       D    MDV D+EGG   G G+G G             V GH+ RRL+ ++ RLV++  LLS  DRGLAC+ L QLWLAL+GPGQ DNLS ++ V
Sbjct:  430 QLDEVGFAGEDSDEED-----GGNGSPGARGTDSYGKDKSLKLEAQFLRTLACRAGVLGGVFARERQQGDASPGLTGGGDGVVGMDV-DEEGGPVAGKGKGGGVXXXXXX-XXXXXVPGHLMRRLQSLSLRLVENYALLSSKDRGLACQGLCQLWLALSGPGQGDNLSRMLGV 595
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8812.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE6.960e-3047.28NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKP7_ECTSI2.790e-2848.55Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8812contigA-nodosum_M_contig8812:20160..20834 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8812.4.1mRNA_A-nodosum_M_contig8812.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8812 19577..21486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8812.4.1 ID=prot_A-nodosum_M_contig8812.4.1|Name=mRNA_A-nodosum_M_contig8812.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=225bp
MLRPPPTPPLPYISAFSDWSPLSKLVRLDVVAFAEDDSEGEDDIAEPGGE
GWGQDDGVALFSRDRSLKLRAQFLRALACRAGVLGGVFARAGSLAVSREK
RDDTCSAMDVEDDEGGEQEGGGRGKGKQGRAPDGATGAAVYGHVTRRLEE
IATRLVQSCDLLSRNDRGLACRALAQLWLALAGPGQSDNLSCLVSVSLVA
CLVVDAHAQQMSPQDSRVLSACAC*
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