mRNA_A-nodosum_M_contig8802.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8802.2.1
Unique NamemRNA_A-nodosum_M_contig8802.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8802.2.1 vs. uniprot
Match: D7FJT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.010e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 FVPGVIVDYVAGRALPRASNWLKPTCERKKLREL 102
            FVPG IVDY AGRALPRASNW+KPTCE  + R+L
Sbjct:  389 FVPGAIVDYAAGRALPRASNWIKPTCEAAQRRKL 422
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BLAST of mRNA_A-nodosum_M_contig8802.2.1 vs. uniprot
Match: A0A835ZLE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.790e-6
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:    4 VPGVIVDYVAGRALPRASNWLKPTCER 84
            VPG +VDY A RALPRAS WLKPTCER
Sbjct:  168 VPGFLVDYAAARALPRASTWLKPTCER 194
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8802.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT4_ECTSI1.010e-876.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLE1_9STRA3.790e-681.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8802contigA-nodosum_M_contig8802:4945..5171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJT4
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.33e-10
EggNOG OGs2E0V1@1|root,2S88H@2759|Eukaryota
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870289.2941368-CDS-A-nodosum_M_contig8802:4944..50251680870289.2941368-CDS-A-nodosum_M_contig8802:4944..5025Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8802 4945..5025 +
1680870289.3125923-CDS-A-nodosum_M_contig8802:5034..50881680870289.3125923-CDS-A-nodosum_M_contig8802:5034..5088Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8802 5035..5088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870289.3292818-UTR-A-nodosum_M_contig8802:5088..51711680870289.3292818-UTR-A-nodosum_M_contig8802:5088..5171Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8802 5089..5171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8802.2.1prot_A-nodosum_M_contig8802.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8802 4945..5088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8802.2.1

>prot_A-nodosum_M_contig8802.2.1 ID=prot_A-nodosum_M_contig8802.2.1|Name=mRNA_A-nodosum_M_contig8802.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
FVPGVIVDYVAGRALPRASNWLKPTCERKKLRELASTRRGARDR*
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mRNA from alignment at A-nodosum_M_contig8802:4945..5171+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8802.2.1 ID=mRNA_A-nodosum_M_contig8802.2.1|Name=mRNA_A-nodosum_M_contig8802.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=227bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:4945..5171+ (Ascophyllum nodosum dioecious)
TTCGTGCCTGGGGTGATCGTTGATTACGTCGCGGGCCGCGCGCTGCCTCG
AGCCTCGAACTGGTTAAAGCCCACGTGCGAGGCCGCGCAGCGAAAAAAAC
TTCGTGAGCTGGCTTCGACGAGAAGGGGCGCGCGTGATCGTTGAGGTCGT
TCGTACGAAAGGAGGACAGGATCGAGTGGGAGGACGGGTGTCGCGTTGTT
GTCAGTTCAGTGGTCCGATGTACGGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8802:4945..5171+

>mRNA_A-nodosum_M_contig8802.2.1 ID=mRNA_A-nodosum_M_contig8802.2.1|Name=mRNA_A-nodosum_M_contig8802.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig8802:4945..5171+ (Ascophyllum nodosum dioecious)
TTCGTGCCTGGGGTGATCGTTGATTACGTCGCGGGCCGCGCGCTGCCTCG
AGCCTCGAACTGGTTAAAGCCCACGTGCGAGCGAAAAAAACTTCGTGAGC
TGGCTTCGACGAGAAGGGGCGCGCGTGATCGTTGA
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