mRNA_A-nodosum_M_contig8759.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8759.5.1
Unique NamemRNA_A-nodosum_M_contig8759.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8759.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8759contigA-nodosum_M_contig8759:8644..8993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870276.7364185-CDS-A-nodosum_M_contig8759:8643..89641680870276.7364185-CDS-A-nodosum_M_contig8759:8643..8964Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8759 8644..8964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870276.8269427-UTR-A-nodosum_M_contig8759:8964..89931680870276.8269427-UTR-A-nodosum_M_contig8759:8964..8993Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8759 8965..8993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8759.5.1prot_A-nodosum_M_contig8759.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8759 8644..8964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8759.5.1

>prot_A-nodosum_M_contig8759.5.1 ID=prot_A-nodosum_M_contig8759.5.1|Name=mRNA_A-nodosum_M_contig8759.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
MRFSFPHPRRGRGGKGKKWTDCVQNDIRAFGIAGDWKATAVLKAEVWVET
VTEGGWRFMAALTEERKGRRGQTSPGEERSNETGKLVIADGGVEFCEATP
IGLVYDP
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mRNA from alignment at A-nodosum_M_contig8759:8644..8993-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8759.5.1 ID=mRNA_A-nodosum_M_contig8759.5.1|Name=mRNA_A-nodosum_M_contig8759.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=350bp|location=Sequence derived from alignment at A-nodosum_M_contig8759:8644..8993- (Ascophyllum nodosum dioecious)
GCGTTCTGATTTTTCTTTAAAAAAATAATATGCGCTTCTCTTTCCCACAC
CCACGGAGAGGACGGGGTGGGAAGGGGAAAAAGTGGACCGATTGCGTCCA
GAACGACATCCGGGCGTTTGGTATAGCGGGGGACTGGAAAGCGACGGCGG
TGTTAAAGGCTGAGGTGTGGGTTGAGACGGTCACGGAGGGTGGGTGGAGA
TTCATGGCCGCGTTGACTGAGGAAAGAAAAGGTAGACGCGGCCAGACATC
GCCAGGAGAAGAGAGAAGCAACGAGACTGGGAAACTTGTTATCGCAGACG
GGGGTGTAGAATTTTGCGAAGCCACACCCATTGGTCTAGTCTACGACCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8759:8644..8993-

>mRNA_A-nodosum_M_contig8759.5.1 ID=mRNA_A-nodosum_M_contig8759.5.1|Name=mRNA_A-nodosum_M_contig8759.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig8759:8644..8993- (Ascophyllum nodosum dioecious)
ATGCGCTTCTCTTTCCCACACCCACGGAGAGGACGGGGTGGGAAGGGGAA
AAAGTGGACCGATTGCGTCCAGAACGACATCCGGGCGTTTGGTATAGCGG
GGGACTGGAAAGCGACGGCGGTGTTAAAGGCTGAGGTGTGGGTTGAGACG
GTCACGGAGGGTGGGTGGAGATTCATGGCCGCGTTGACTGAGGAAAGAAA
AGGTAGACGCGGCCAGACATCGCCAGGAGAAGAGAGAAGCAACGAGACTG
GGAAACTTGTTATCGCAGACGGGGGTGTAGAATTTTGCGAAGCCACACCC
ATTGGTCTAGTCTACGACCCG
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