mRNA_A-nodosum_M_contig875.30.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: D8LDB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB6_ECTSI) HSP 1 Score: 139 bits (350), Expect = 4.580e-34 Identity = 97/246 (39.43%), Postives = 132/246 (53.66%), Query Frame = 3
Query: 9 LRREVSKFLRSSDDPNTLTFKQVRFAVEKSLDLSGGTLINSIKSRIKEAIHSVMDEIEAEANAVTSPP---------------REVKPKDAVGTSKTHSTEVNSKPSKRKKSESRDSASGMKEARGKTREPSRADKKISKPNGRTTGSCRGGHI--DRDGKHE-------------DDSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMV 656
LRRE+S FLR++ DPN LTFKQVR AVE+SL L G+L KS+IKEA+HSVMD+IEA+ T+ R P + S T+ S K +S++ K A G E + DK ++ +G T + G ++GK + D LVCVL ET +RKQVNV+ W VD+RE++ K+ EY P KKG++LNPSQW+I+R+A IDA +
Sbjct: 16 LRREISTFLRAAADPNALTFKQVRLAVEESLGLPEGSLHKGFKSQIKEAVHSVMDDIEADRAKTTAKXXXXXXXXXXXXXXTTRSAAPAPSHIYSSRGDTDDRSAIPK-------NSSTKRKVATGSGGEDASGDKHSNRNSGNKTDAAGNGKEVGTKEGKKQKKDIRKTGGEDGGDGDLVCVLGETKSARKQVNVRTWNKRTLVDIREFYLKEAKEYRPGKKGMSLNPSQWEILRSAAGQIDANI 254
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A7S2XTJ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTJ7_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.090e-9 Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 3
Query: 492 KQVNVKKWKGNIQVDVREYFA-KDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVE 659
K+VNV+ +KG + +D+REY+ D GE P KKGI+LNP QW+ ++ M+D+D +E
Sbjct: 54 KKVNVRTFKGRVLIDIREYYLHSDSGEERPGKKGISLNPDQWEALKEIMSDVDNAIE 110
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A6I9QA16_ELAGV (LOW QUALITY PROTEIN: RNA polymerase II transcriptional coactivator KIWI n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9QA16_ELAGV) HSP 1 Score: 64.3 bits (155), Expect = 4.000e-9 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 3
Query: 450 DSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVEAKS 668
D ++C LS+ R V V++WKG + VD RE++ KD G+ P KKGITL QW I+ ++DID + K+
Sbjct: 35 DIVICELSQNRR----VAVRRWKGKLLVDFREFYVKD-GKQLPGKKGITLTVDQWKILHDHIDDIDKALTEKA 102
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: H2ZUX1_LATCH (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZUX1_LATCH) HSP 1 Score: 62.4 bits (150), Expect = 7.160e-9 Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query: 498 VNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDID 647
VNV+++KG + +D+REY+ GE P +KGI+LNP QW+ ++ M+DID
Sbjct: 10 VNVREFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQMSDID 59
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: D8RF80_SELML (PC4 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RF80_SELML) HSP 1 Score: 62.4 bits (150), Expect = 1.250e-8 Identity = 30/77 (38.96%), Postives = 52/77 (67.53%), Query Frame = 3
Query: 432 DGKHEDDSL-VCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVE 659
D K +++S+ VC +S+ ++V+V+KW+G + VD+REY+ K GE P KKGI+L QW++++ + ID+ V+
Sbjct: 12 DEKEDEESVAVCEISKN----RKVSVRKWRGQVLVDIREYWYKG-GECLPGKKGISLTMDQWNVLQEHVKQIDSAVQ 83
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A8J6FI17_ELECQ (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FI17_ELECQ) HSP 1 Score: 62.4 bits (150), Expect = 1.250e-8 Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query: 498 VNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDID 647
V+V+ +KG + VD+REYF + GE P +KGI+LNP QW+ ++ M+DID
Sbjct: 31 VSVRDFKGKVLVDIREYFMDNQGEMKPGRKGISLNPEQWNQLKEQMSDID 80
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A8C9VBN4_SCLFO (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VBN4_SCLFO) HSP 1 Score: 64.7 bits (156), Expect = 1.260e-8 Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 3
Query: 405 SCRGGHIDRDGKHEDDSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVE 659
S R G R G +DD++ + + V+V+ +KG + +D+REY+ GE P +KGI+LNP QW+ ++ +++IDA V+
Sbjct: 82 SSRAGGSSRGGASKDDNMFQI-----GKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISEIDAAVK 161
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A1J4KBY2_9EUKA (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KBY2_9EUKA) HSP 1 Score: 63.2 bits (152), Expect = 1.460e-8 Identity = 24/72 (33.33%), Postives = 49/72 (68.06%), Query Frame = 3
Query: 444 EDDSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVE 659
++ + V + + + ++QV + K+KG ++VD+REY+A D+ E+ P+KKG++L+ +QW + + M I+ +E
Sbjct: 40 KEKAYVFPIGQNSMGKRQVQISKFKGKVRVDIREYYADDNDEWKPTKKGLSLDATQWGKLCSLMGMINEAIE 111
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A803KIA5_XENTR (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803KIA5_XENTR) HSP 1 Score: 63.5 bits (153), Expect = 2.140e-8 Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 3
Query: 393 RTTGSCRGGHIDRDGKHEDDSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDID 647
+T S +GG R +D++ + + V+V+ +KG + +DVREYF GE P +KGI+LNP QW+ ++ M+DID
Sbjct: 60 KTGESSKGGASSRQSNAPEDNMFQI-----GKMRYVSVRDFKGKVLIDVREYFMDQAGEMKPGRKGISLNPEQWNQLKEQMSDID 139
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Match: A0A3B3TBF2_9TELE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3TBF2_9TELE) HSP 1 Score: 62.8 bits (151), Expect = 2.480e-8 Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 3
Query: 405 SCRGGHIDRDGKHEDDSLVCVLSETARSRKQVNVKKWKGNIQVDVREYFAKDHGEYAPSKKGITLNPSQWDIIRTAMNDIDAMVE 659
S GG + DD+L + + V+V+ +KG + +D+REY+ GE P KKGI+LNP QW+ ++ M+DID V+
Sbjct: 44 SSAGGDSSKATGKSDDNLFQI-----GKMRYVSVRDFKGKVLIDIREYWMDQQGEMKPGKKGISLNPEQWNQLKEQMSDIDEAVK 123 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig875.30.1 >prot_A-nodosum_M_contig875.30.1 ID=prot_A-nodosum_M_contig875.30.1|Name=mRNA_A-nodosum_M_contig875.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp MDEIEAEANAVTSPPREVKPKDAVGTSKTHSTEVNSKPSKRKKSESRDSAback to top mRNA from alignment at A-nodosum_M_contig875:279489..285230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig875.30.1 ID=mRNA_A-nodosum_M_contig875.30.1|Name=mRNA_A-nodosum_M_contig875.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5742bp|location=Sequence derived from alignment at A-nodosum_M_contig875:279489..285230- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig875:279489..285230- >mRNA_A-nodosum_M_contig875.30.1 ID=mRNA_A-nodosum_M_contig875.30.1|Name=mRNA_A-nodosum_M_contig875.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig875:279489..285230- (Ascophyllum nodosum dioecious)back to top |