mRNA_A-nodosum_M_contig8711.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8711.1.1
Unique NamemRNA_A-nodosum_M_contig8711.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8711contigA-nodosum_M_contig8711:12185..13715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870268.764875-UTR-A-nodosum_M_contig8711:12184..121921680870268.764875-UTR-A-nodosum_M_contig8711:12184..12192Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8711 12185..12192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870268.7785296-CDS-A-nodosum_M_contig8711:12192..123281680870268.7785296-CDS-A-nodosum_M_contig8711:12192..12328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8711 12193..12328 +
1680870268.7933192-CDS-A-nodosum_M_contig8711:13632..137151680870268.7933192-CDS-A-nodosum_M_contig8711:13632..13715Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8711 13633..13715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8711.1.1prot_A-nodosum_M_contig8711.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8711 12193..13715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8711.1.1

>prot_A-nodosum_M_contig8711.1.1 ID=prot_A-nodosum_M_contig8711.1.1|Name=mRNA_A-nodosum_M_contig8711.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MMSSGQSRLDADQAWGFDDNRRSCASPMATPASTLSPTAAGGSQQGGGDM
HGKTRSAEASSDWHLPALHRFAR
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mRNA from alignment at A-nodosum_M_contig8711:12185..13715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8711.1.1 ID=mRNA_A-nodosum_M_contig8711.1.1|Name=mRNA_A-nodosum_M_contig8711.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1531bp|location=Sequence derived from alignment at A-nodosum_M_contig8711:12185..13715+ (Ascophyllum nodosum dioecious)
AGGGTCGAATGATGAGCAGTGGTCAATCAAGACTGGACGCAGATCAGGCG
TGGGGTTTTGATGACAACAGAAGATCCTGCGCCTCTCCAATGGCAACACC
GGCGTCTACGCTCTCCCCAACAGCGGCGGGCGGTTCCCAACAAGGTCTGT
GAAAGCGTCCAGAATGGTGTGCGTTGGTTTCGTGCGTCCATACTTTGAAT
TGTCTTTAAAGACGGGCATGTCTTCATAAAGGAACAGTCCCTCTCGAGTT
ACTTCTAGCCTCTGTTCACACATGAAAACGCGCGCTCTATGTTATTTTTT
TTGTATCGCGAGTTTTTCGTCGTCCACAGAGCATCATAGTTTACAGAAAG
CACTTCACTGTTAGGGCCGAGTCTAAATTAAACTCAACGTAAAAAGGCGT
TGCTGGGTATGACCGATGAAGAAGAATAAGCTCCCTCTACTGAACAAAGT
GAGGAAATGCTTTCATCCGGAATCAACATGAATGTCCGAGGTCTCAGCTC
AAATGTCAAAAGATGTGTATTCCCGATTTACCTTTTTTTTCATTTGCATA
CCATTTTACATAGCTCATGGTTTGTTTGACTCCTAAAGTATCGCGAGTTT
TTCGTCGTCCGCAGAGCATCATAGTGTACAGAAAGCACTTCACTGTTAGG
GCCGAGTCTGAATTAAACTCACGTAAAAAGGCGTTGCTGGGTATGACCGG
TGAAGAAGAATAAGCTCCTCTACTGAACGAAGTGAGGAAATGCTTTCATC
CGGAATCAACATGTATGTCAGAGGTCTCAACTCAAATGTCAAAAGATGTG
TTACCGATGTACTTTTTTTTTCACTTGATACCATTTTACATCGCTCATGC
GATGTTCGTTTGACTCTTAAAATAACGAAAATAAATTTTACGTGTGAATT
TTTAGTTATGGAGTCTGACTAATTCGAAAAAAATATCTAATTTCCCTTAT
GTATCGTTGGAGCTTTGATGTGAAAAAAAGGGAATCTCTCTGAGCAAGCA
GTAGTTGGCCTGACGCTGAAGAGAAGGCCCAACTATGAAGGGTCTAAAAA
CTACACCACTGAGCTCCTGATAAATAAGGGATGAGATGCCACCGTGCCCT
CATTTCCCTAATGATAACCCACACACCAAGGGGACTTCCGAGTACGAGTA
CGATATCTATTTAAGGTTGTATCATCTTCTCTATCTTAGGAAAAAGCGAG
GGAGGAGCGCTGTGTCTTGAGCGAAAGAAGAGCGATGAAGATTGCATATG
TTTGAACTAGAGACGCGCCCCGTTCAACGGGTTGCCGTGAAGAATTTCTC
GCAAAATGTCATCCTTACTCAGAGCTCTTCGGCCCGCTGTCTCGTTATGT
CAGCTCTCCTCTCACATCCTAAGACCAAGTTACAAACATGATCGCGCAAA
TTGTAACAATGCCCTACTGAGTCTCGGTGTCTTGATACAATTTCACAGGG
GGTGGTGACATGCACGGGAAAACGCGGTCTGCTGAAGCGTCGAGCGACTG
GCACCTTCCCGCACTACATCGCTTTGCTCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8711:12185..13715+

>mRNA_A-nodosum_M_contig8711.1.1 ID=mRNA_A-nodosum_M_contig8711.1.1|Name=mRNA_A-nodosum_M_contig8711.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig8711:12185..13715+ (Ascophyllum nodosum dioecious)
ATGATGAGCAGTGGTCAATCAAGACTGGACGCAGATCAGGCGTGGGGTTT
TGATGACAACAGAAGATCCTGCGCCTCTCCAATGGCAACACCGGCGTCTA
CGCTCTCCCCAACAGCGGCGGGCGGTTCCCAACAAGGGGGTGGTGACATG
CACGGGAAAACGCGGTCTGCTGAAGCGTCGAGCGACTGGCACCTTCCCGC
ACTACATCGCTTTGCTCGA
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