prot_A-nodosum_M_contig86.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig86.5.1
Unique Nameprot_A-nodosum_M_contig86.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length531
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig86.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 220..252
e-value: 25.0
score: 13.7
coord: 259..291
e-value: 270.0
score: 8.4
coord: 333..365
e-value: 190.0
score: 9.4
coord: 409..439
e-value: 360.0
score: 7.4
coord: 296..328
e-value: 0.0059
score: 25.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 214..481
e-value: 2.6E-15
score: 56.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 315..398
coord: 199..363
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 274..513
e-value: 5.6E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR13068:SF151TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTICcoord: 315..398
coord: 199..363

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig86contigA-nodosum_M_contig86:173702..228452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig86.5.1mRNA_A-nodosum_M_contig86.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig86 173677..228893 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig86.5.1 ID=prot_A-nodosum_M_contig86.5.1|Name=mRNA_A-nodosum_M_contig86.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=531bp
MVLRWTMCAFMYLVTYSSSSHDSIIGGDMWRFSGLHLSSSVSAASSVADA
PWLSHAHDSAVRQGRGAVQHFSCRASVQHRNFISIPAGKKRQRRSAGVGS
GAFNLAPSLWTASYRGGIDRCRWARGLMKGSTRNGPVEEPFGENSVSYSA
LSGSGSGSRAEDRGRAAATLEQRLRESLAMTDAQAQGVAAQCGTVRPGVA
EDVLAFLRGDGLDLTVDQMRLVVLKAPRLLEMSVPESLSPRVDWWLRQAG
LGLTRKALGKMATKCPEVLLLAHDAVLSPIVLWLLVEVKMSRTGVAKLLA
SYPQLLTLDLEGQLRRRHRWLTSDLGLQTKDARRIVTIAPQVLHASKEET
LRPACDWLARTIGGAGGETSVGGVVTRSPELLLTCPGAMDKCLVHLSEVL
LEGNMQQASALFERQPALLLRSGRLEPLVTFMTLEMKASLPQAREAIVND
VTLLEFDMNGRVFPRLDAVRKAGIVGDVANGRTPQASLREMMRVLGRFSD
ARFVKWLARERVCPEAVEEHRGEAVPHKHL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf