mRNA_A-nodosum_M_contig1012.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1012.7.1
Unique NamemRNA_A-nodosum_M_contig1012.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 2.790e-144
Identity = 224/360 (62.22%), Postives = 262/360 (72.78%), Query Frame = 1
Query:  112 MVTRYPLCIVCVAILALGLRSASARTLTRLMVARSLPRDDKHDSAVIARGRISGVGEQPTAFQLGRRRKTFPGEIWRVYRGAWGLKTVVKQVRDLRGGAVPSDASDEIFDSLSDEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQEI 1191
            MV R+P C+  V +LALGL   + R   RL+   S       +     +     + ++  A +LG  R++F        +GAWGL TV      LRGGA   D                       DF EASF  RLKQDW KTP+ITR +FQVS+ I +  A LN+NQWP+FLLLDWRP + KLQLWRL TPFL LGPLG+NF LT HF+WTYMS LEKLHYREPHTFVMLL FGMSSL+LLTL+TGGDVN+SYTLGHS++CF+V +WSRKFAGT+VN+LDMFELPTELLPYFFVAQTLMMEGVIPWVDLSG+LIGYAWQTLSLKGLL+APKPLVNLFRNNA+LRAEYA+AGKEYGQ++
Sbjct:    1 MVLRHPACLGSVVLLALGLTPTAGRVSPRLLALGSSFSGRHENGKQRQQPEQESLQQRAAALRLGGDRQSFLAHSGNGRKGAWGL-TVAS---GLRGGADDEDXXXXXXXXX---------XXXXXDFGEASFVDRLKQDWKKTPVITRAYFQVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDV 347          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.330e-58
Identity = 101/235 (42.98%), Postives = 152/235 (64.68%), Query Frame = 1
Query:  478 VDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182
            +DE DF   S   R+K  W KTP I++ +   S+ I +       NQWP  LL+DW   L KLQ+WRLVT FL+ G  G++++LT HF WTY+ QLEKLH+R+P  F ++L FGM+ L +  L+    ++ +  LGH+LSCF+V +W++K+ G  VNV+D+F +  ELLP+FFVAQTL++ G +P  D+ G+  G+ +  L+LK +  AP+ L  +F  ++ ++  Y R  +EYG
Sbjct:  102 IDEADFKGESILVRMKTAWKKTPPISKIYVLSSMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGMTVLHISLLILKNYLSPN-VLGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK)

HSP 1 Score: 193 bits (490), Expect = 9.760e-55
Identity = 107/271 (39.48%), Postives = 159/271 (58.67%), Query Frame = 1
Query:  394 LRGGAVPSDASDEIFDSLSDEDEDDLELVD--------EEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182
            +RGGA     S+  F+    +  DD E  D        E+ F EA+  +R+   W K+  +T+ F  +S+ I V C   N+NQWP+ L LDW+      Q WR +TPF   GPLGVN++LT  F WTYM+ LEK+  +EPH F ++ V G ++L+ L    G D      LGH+L+CF+V VWSR   G  V + D FE+   L+P+FF  Q ++MEG+IP+ D+ G+LIG+A+  L  K LL AP  + ++F++   L+++Y    +E+G
Sbjct:   60 IRGGADSESDSESDFEYDDGDLSDDEEYFDGAVGDEGNEDSFKEATLVQRIMISWNKSAPLTKAFISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALYGAMGWDPAG---LGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: W7TX70_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX70_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.680e-51
Identity = 90/212 (42.45%), Postives = 140/212 (66.04%), Query Frame = 1
Query:  472 ELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAP 1107
            E V EEDF++ SFA +LK+++ +TP +T+ +   S+ +       N+NQWP +LLLDW   + +LQ+WR  T FL+ G  G N++L+ HF WTYM+ LEKL  + P  FV +++FG+S L++ + L G      + LGH+LSC++V VWSR F G  V+V+ +F LP  +LP+FFVAQT+++E  +P  DL G+ +G+ +   S + L++ P
Sbjct:  193 EGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQ---PHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP 401          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN)

HSP 1 Score: 181 bits (458), Expect = 3.310e-50
Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 1
Query:  505 SFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLN-QNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182
            +F  R  + W +TP +T+ +   S+ +  C +FL   NQWP +L L+W     + Q+WR +T FLF GP G++++LT HF WTYM  LEKL + EP  F++++ FG  SL+L   L G     ++ LGH+LSCF+V +W+R + G +V+V++ F +  ELLP+FF AQT ++E  +P  DL G+ IG+ +     + +L APKPL +LF +N  L A Y    +E+G
Sbjct:   97 TFKSRTLKSWAETPPMTQAYVGASLALT-CGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLLGVGLGGMK---THFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S1ZIK9_9STRA (Derlin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.110e-48
Identity = 103/283 (36.40%), Postives = 166/283 (58.66%), Query Frame = 1
Query:  394 LRGGAV-PSDASDEIFDS-LSDED-------EDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQEI 1191
            +RGGA+  SD S+  FDS  SD+D       E+D E+  E+DF+E +   R  + + KTP  T+ +   S +        ++N +P  L L+W+PTL +LQLWR +T FL  GPLG+ +++T HF WTYM+ LE+L++  P+ F ++++FG +S+V           A Y+        LGH+LS F+V VWSR   G +VN+ ++F    E+LP+FF+AQT ++EG +P +DL G++ G+ +       +LR P  L+N + ++      Y+ A +E  ++I
Sbjct:   48 IRGGAILDSDDSEYDFDSDFSDDDDAFFDLNEEDFEISAEDDFNEDTSLSRFMEAFAKTPPFTKAYMTASFIATSVGYLTSKNDFPPLLQLNWKPTLTRLQLWRPITAFLNFGPLGLGYIMTCHFVWTYMATLERLNHAAPYDFWVMILFGCASMV-----------AGYSCLGLSPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDLLGIVFGHIYHHYKTTHVLRTPTFLINWYNSDGV----YSTAVREKYKKI 315          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.590e-47
Identity = 94/246 (38.21%), Postives = 150/246 (60.98%), Query Frame = 1
Query:  451 DEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQE 1188
            DED++  E + +EDF+E +   R+ Q W +TP +T+ FF VS  +       N+N WP  L L+W   +L+ Q+WR+   F   G LG+N +++ +F WTYM +LE+++++ P  F ML+ FG   L++ T L G  ++  + LGHS          R++ G +VNV DMF L  ELLP+FFVAQTL++EG +P +DL G+ +GY +  L ++ L++AP+ +   F+  A  + +Y R  +E+G E
Sbjct:   25 DEDDEFDEDIADEDFEEGAVGNRIGQLWARTPYLTKRFFYVSFALTAYAFVFNKNAWPKLLDLEW-DKVLRGQIWRVAATFFCFGALGMNCIISMYFVWTYMGELERMYFKRPQDFAMLMGFGALCLLVFTSLMG--IHGQF-LGHS----------REYEGVEVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFGVE 255          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV)

HSP 1 Score: 174 bits (441), Expect = 3.240e-47
Identity = 97/268 (36.19%), Postives = 151/268 (56.34%), Query Frame = 1
Query:  397 RGGAVPSDAS-------------DEIFDSLSDEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNN 1137
            RGGA+ SD               D++F   +D D+    ++ E+DF E    +R    W KTP  T+ +   S+   +    LN+N++P  LLLDW+P L ++QLWR +T FL +GP G+ + +T HF WTYMS LE+L++  P+ F ++++FG  ++V           A YT        LGH+LS F+V VWSR   G +VN+ ++F    E LP+FF+AQT ++EG +P +DL G+  G+ +      G++RAP+ LV  +  +
Sbjct:   91 RGGALDSDYDXXXXXXXXXXXXXDDLFFDGADVDD----VIGEDDFGEDGTLERASAAWAKTPPFTKMYLSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGCVTMV-----------AGYTFLNISPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKS 343          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC)

HSP 1 Score: 172 bits (436), Expect = 9.660e-47
Identity = 91/248 (36.69%), Postives = 150/248 (60.48%), Query Frame = 1
Query:  454 EDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVN--ASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYL----RAEYARAGKEY 1179
            +D DD ++  E +F E +   R+   W KTP +T+ +   S    +     N+N++P+ LLLDW+P L KLQ+WRL+T FL  GPLG+ +++T HF WTYM+ LE+L++  P+ F +++ FG  S+V+     G  +   +   LGH+LS F+V +WSR   G +VN+ ++F    E+LP+FF+AQT ++EG +P +D  G++ G+ +      G+LRAP  +V  +  ++ L    R+EY     ++
Sbjct:   96 DDADDFDMA-ESEFAEDNTVDRMIDAWRKTPPLTKGYLSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQLSMVV-----GYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEYKPISSDF 337          
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.120e-44
Identity = 84/220 (38.18%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  484 EEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVL-LTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 1140
            E+DF E    +R    W KTP  T+ +   S+        +N+NQ+P F LL+W+P L +LQ+WR  T FL  GP G+ +++T HF WTYM+ LE+L++  P+ F +++VFG +S+V+  T L   +++  + LGH+LS F+V VWSR   G +VN+ ++F    ELLP+FF+AQT ++EG +P +DL G+L G+ +       ++R P+ + + +  ++
Sbjct:  105 EDDFGEDGTVERTIAAWKKTPPFTKAYLTASMAATGVGYVMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVGYTFL---NISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDS 320          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R6_ECTSI2.790e-14462.22Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_... [more]
A0A7S2Y3M2_9STRA7.330e-5842.98Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A6V1KE03_HETAK9.760e-5539.48Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep... [more]
W7TX70_9STRA5.680e-5142.45Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
F0YAW8_AURAN3.310e-5040.97Derlin n=1 Tax=Aureococcus anophagefferens TaxID=4... [more]
A0A7S1ZIK9_9STRA2.110e-4836.40Derlin n=3 Tax=Ditylum brightwellii TaxID=49249 Re... [more]
A0A836CBA0_9STRA2.590e-4738.21Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S1ZWZ3_TRICV3.240e-4736.19Derlin n=1 Tax=Trieres chinensis TaxID=1514140 Rep... [more]
B7G004_PHATC9.660e-4736.69Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=285... [more]
A0A7R9VZL8_9STRA1.120e-4438.18Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1012contigA-nodosum_M_contig1012:76760..80987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2R6
PFAMsDER1
Model size1193
Max annot lvl2759|Eukaryota
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.88e-144
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
Descriptionubiquitin-dependent ERAD pathway
Cds size1080
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1012.7.1prot_A-nodosum_M_contig1012.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1012 76871..80987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.9766986-UTR-A-nodosum_M_contig1012:76759..768701680866370.9766986-UTR-A-nodosum_M_contig1012:76759..76870Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1012 76760..76870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.9911046-CDS-A-nodosum_M_contig1012:76870..771311680866370.9911046-CDS-A-nodosum_M_contig1012:76870..77131Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 76871..77131 +
1680866371.0008848-CDS-A-nodosum_M_contig1012:78433..786311680866371.0008848-CDS-A-nodosum_M_contig1012:78433..78631Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 78434..78631 +
1680866371.0097318-CDS-A-nodosum_M_contig1012:79636..798931680866371.0097318-CDS-A-nodosum_M_contig1012:79636..79893Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 79637..79893 +
1680866371.0218253-CDS-A-nodosum_M_contig1012:80233..803481680866371.0218253-CDS-A-nodosum_M_contig1012:80233..80348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 80234..80348 +
1680866371.0302377-CDS-A-nodosum_M_contig1012:80531..806631680866371.0302377-CDS-A-nodosum_M_contig1012:80531..80663Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 80532..80663 +
1680866371.0392923-CDS-A-nodosum_M_contig1012:80870..809871680866371.0392923-CDS-A-nodosum_M_contig1012:80870..80987Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1012 80871..80987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1012.7.1

>prot_A-nodosum_M_contig1012.7.1 ID=prot_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=360bp
MVTRYPLCIVCVAILALGLRSASARTLTRLMVARSLPRDDKHDSAVIARG
RISGVGEQPTAFQLGRRRKTFPGEIWRVYRGAWGLKTVVKQVRDLRGGAV
PSDASDEIFDSLSDEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRT
FFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPL
GVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGD
VNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTL
MMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYA
RAGKEYGQEI
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mRNA from alignment at A-nodosum_M_contig1012:76760..80987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1012.7.1 ID=mRNA_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4228bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:76760..80987+ (Ascophyllum nodosum dioecious)
GTCGATTCTCTTGTTGTATTCCTGTTGTGTTCGTAGCAGCTCTGGCTTTA TTGGCCTCACAGGACAAGAGGTGCCCGCACTGGTGGCGTAAATCGGATAC TGTATCATAGGATGGTTACTCGATATCCTCTATGTATAGTTTGCGTTGCA ATCCTGGCGCTGGGGTTACGCTCTGCGTCGGCTCGCACGCTTACTCGCTT AATGGTTGCCCGCAGCCTCCCGCGCGATGACAAACACGACTCTGCCGTAA TCGCTCGAGGCAGGATCTCAGGCGTCGGAGAACAACCCACAGCGTTCCAA CTAGGCAGACGACGGAAAACATTCCCGGGGGAGATATGGAGGGTTTACAG GGGGGCATGGGGCTTAAAGACGGTACGTTTTGACTTGTCTTCTGTCTCTC GATGTTTTGCTCTTCATACCTCGTGACGTGTATGATCGCGTTCTTCCAGA GATAAACCAGACCTCGTCAACCATCGACCGGGCAACGCACACCGTAGCGT AGCAGCCTGGCTTCCAGCCCGCTCCGTCGGCGAGAGCAGGAGTATTCGTC GCTTTTTTGGTGTTTTCTCACCTTTCATACGTGTGCAATACACAGCTGCC ACGTGTCCGTTACGCAGTTGTTGTTCAAAGAAAAATCTGAATGCGTCTAC ATCCCCCAGTCAGGGAAAATGTCAAAACGTTTGTTAGGTGAGATCATAGG CTGCAAAGACAAAACCTCTTCATGGCATATTAAACGGGTTCCCCTATGTT AGTAACATTGGGTCAACAGTATAATGTCGGGGAGAAGCCCACCGTTATAA TATACACTTACATAAATCGCCATGCAGGGACACCAAACAAAAAGCAAAAA TAAAACAGAAACGATGTTGTTTCATTGGCAAGACCAATTGCTTGCTTTCG CTGGCCATGTGCGGTTCCAAAATAATTGAGCGACGACAATCACTGATAGG TTGTTTCCTATTATTGATAATATGTGACATGTACGAATCCTTCACCTACA TGTATGGTCATCAAATATATAGCAAGAGTAAGGATCAACCGCGCAAGGTT GCTAATCCTGCTCGTGGTCAGCTGAACAGGGAACATGAATATTTCCCTGT CCCCGTTCGCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCC GCCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCGGAATCTGGTCCTTA CTTACGGCATTCCTCCCGAGTTCCGCGGCGGCGTCCATTCATTTTTTTAA ACCGCCACGCGCCATCGGGTCAGTCCCGAGTTCATCGGGTCGCGCAATTG CGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACGGGGCCAGTAAA CCTCAAGGTAGTTCCAGTAACGGGTGCTGCCTTGGCAGGTCACCATGGAC CATCTAATATGCGCCTCTCTTTCCCACACCCACTATTGGTATAAAGTGGG CATGTTGAAAGCACTATATCGGCGGATGGCACGGTACGGCCCAGCATTGT TCATGTATGTCGGTCATCTAACTCCCAACGTCCGGCACGTCGCGTCTCTC CATAGGCTTCCTAACCCAGGCCGCCCACATAGCCAAAGCTTTGACACCTG TAAAGAAGTGTAAGGCAGAAGTATGAACGCGAGTGCCCACGCCCACCCTA CGGCCTGTGATGCGTGGAGGGCAGGTGGTGAAACAAGTACGCGACCTTCG AGGTGGGGCAGTTCCTAGCGACGCTTCGGACGAAATTTTTGATAGCCTAA GTGACGAGGATGAAGACGACCTTGAGCTTGTGGACGAAGAGGACTTCGAC GAGGCCAGTTTTGCCAAACGACTCAAACAAGACTGGGTCAAGACACCGAT CATAACGCGAACCTTCTTCCAGGCGAGTCAATCATGCGGAACGACAGCAT TCATGTAGCGAATGGTCCCCTGGAAAAAAGCTTCATTTCTTCTGCGTCAG TTGATGGCGGAGGTGCTCGGTGATCGCAACAATTCACGGCTAAACGATAC ACTCGCACAATCAGTAGGACATTATCGGGATGTCTATTCCCCGCAGACTC CCCTTGGAAGCGAAATCTTGGCCGTATTTTCCTTACGAGTGGCTCATTTA TTATGCCGCTGGTTCTTATTGTGAACATCTCTAGAACTCAACCTTGCGCT GCTCCTAGACTCTGCAGTAATCCGTTTTGGGTTATCGATCGCGCCTCACC GCTAGAGCTACATCAAGTTCCTTAGACCAACGTCATCAACCCAATTTATT GTCAGCCTTATGCCGGTTGCCAGTAGCACATGCTATGTCATACCAGTAGC TGTGTAACCTGATGCCACCATCGTTGCGGAAAGCTACGTGGACTTTTTCT GCTACGAACGAGTTAAAATACCAACTTTAGAATCGAAGCCATGCGTTGTC CCCCGAATTCCCACCGCTCTTTTTTTTTTTTTTGCTTGTATATCTCACTT ACGGCCAATGAGTCTCAACGTGCTAGGTTACCAATCCCACCTGTTGCAGG GTTGCCACCCTGCCTGTGGTCACGAAGGATCTTCTCATCTTTCCCCGGTT CAAGCCTTACGATTTTTTATCGCGATGCAAGTTCAGCACTCTTACAACTT GTCAACCAATGGTTGAATTTTATTTACTCAAGTTCTCACGCTTTCCGCTA CGGAAAAAATAACAAAATACCGAATTTTGTTAAGAATCGAACTCATGACT TCCGCTCTAGCAGGTATATGAGGTTACCTACTATTTAATACCGGTAGACA ACTCGGGCAACCACATTATGTTCAGATAACACAAAAAAAAGCGCGATTGA AAAGTTACGATTTTCGTGTTATAACCGCTGGTCAACTCAAACCACGAACG CCACACTTACCCACACCCCGCCACCAGGTGAGCATTGTCATCGCGGTATG TTGCGCCTTCTTGAACCAGAACCAGTGGCCGAGCTTTCTCCTCCTGGACT GGCGGCCGACCCTTCTCAAGCTGCAGCTCTGGCGGCTGGTGACCCCTTTC CTCTTCTTGGGCCCGCTCGGGGTGAACTTCGTGCTCACAACGCACTTCTC TTGGACGTACATGAGCCAGCTCGAGAAGCTGCACTACCGGGAGCCGCACA CCTTCGTCATGCTCCTCGTGTTCGGCATGAGCAGGTTCGGGTGACGCCGC TTGGGTGTAAAGTCTCGTCCGCGCGTTTACGGAACCGCGGCGGTACGTTG TGCATTGTTTTTTTAAGGGCGGTGGGCACCAGGTCAAAATCTTTACTCAC ACGTGGGTTTTGTGCAGGCAGAAAACGCAGAACGTAAAGGAAAAGATTGC GCGCCGTGATACAGCTGGGTTGCGTCGGTTGAGGGAGAAAGGGTGGCGCG CTCAATCGCCTTCGACAAGCGCATTGATGGGGCGAGGACGTTCACCTCTT GTGGAGCCGATGGCGGCAGCTCACTTCATTGTTGTCGCCTGCCGTTTGCT CGATGCCCACGACCCATATCACAGCCTAGTTTTGCTCACCCTGCTCACGG GTGGAGATGTCAACGCCAGCTACACGCTAGGCCACAGCCTCAGCTGCTTC ATGGTGACGGTGTGGAGCCGCAAGTTTGCCGGCACGAAGGTCAGAGCAAG CTTTACTTGTCACCAAGTCACTGGACACACTTATAAGGGCAATCATTCGC TTAAACCCTTGCTTTGTCACTACGGCGACTAGTATTGCACGCACTGTTCC TGTAGTTGCGCGAACCCTCGCCGACCCCGTCCCCCGATAGTATCGCTCAC TTTCATTCTTTCCCAACACTAGGTGAACGTTCTGGACATGTTCGAGCTTC CTACGGAGTTACTCCCCTACTTCTTTGTGGCGCAGACCCTCATGATGGAG GGCGTTATTCCGTGGGTCGACCTCAGCGGATTGCTGATTGGCTACGCCTG GCAGGTACCCACATTGATGCGCAGAGACTGCCAGCGAGCCTGTACACGAG TGTATGTCGGGAACGAAACACTTCTCATGAGACGTCGATTTCGGGGGAAG GGTCCTCTCAAAGCTCTCGGAAACGAAACTGTACAGGTCGTTAACGAAGG CGTCGACGCAATCCTTCTCCGCCGCCGATGCTGCACGTCTTTCCGCCGCC CCTGCTCACAGACTTTGTCGCTGAAAGGACTCCTGCGGGCTCCGAAGCCC CTCGTCAACCTCTTCCGCAACAATGCCTACCTGCGAGCGGAGTACGCCCG CGCCGGCAAGGAGTACGGGCAAGAGATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:76760..80987+

>mRNA_A-nodosum_M_contig1012.7.1 ID=mRNA_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:76760..80987+ (Ascophyllum nodosum dioecious)
ATGGTTACTCGATATCCTCTATGTATAGTTTGCGTTGCAATCCTGGCGCT
GGGGTTACGCTCTGCGTCGGCTCGCACGCTTACTCGCTTAATGGTTGCCC
GCAGCCTCCCGCGCGATGACAAACACGACTCTGCCGTAATCGCTCGAGGC
AGGATCTCAGGCGTCGGAGAACAACCCACAGCGTTCCAACTAGGCAGACG
ACGGAAAACATTCCCGGGGGAGATATGGAGGGTTTACAGGGGGGCATGGG
GCTTAAAGACGGTGGTGAAACAAGTACGCGACCTTCGAGGTGGGGCAGTT
CCTAGCGACGCTTCGGACGAAATTTTTGATAGCCTAAGTGACGAGGATGA
AGACGACCTTGAGCTTGTGGACGAAGAGGACTTCGACGAGGCCAGTTTTG
CCAAACGACTCAAACAAGACTGGGTCAAGACACCGATCATAACGCGAACC
TTCTTCCAGGTGAGCATTGTCATCGCGGTATGTTGCGCCTTCTTGAACCA
GAACCAGTGGCCGAGCTTTCTCCTCCTGGACTGGCGGCCGACCCTTCTCA
AGCTGCAGCTCTGGCGGCTGGTGACCCCTTTCCTCTTCTTGGGCCCGCTC
GGGGTGAACTTCGTGCTCACAACGCACTTCTCTTGGACGTACATGAGCCA
GCTCGAGAAGCTGCACTACCGGGAGCCGCACACCTTCGTCATGCTCCTCG
TGTTCGGCATGAGCAGCCTAGTTTTGCTCACCCTGCTCACGGGTGGAGAT
GTCAACGCCAGCTACACGCTAGGCCACAGCCTCAGCTGCTTCATGGTGAC
GGTGTGGAGCCGCAAGTTTGCCGGCACGAAGGTGAACGTTCTGGACATGT
TCGAGCTTCCTACGGAGTTACTCCCCTACTTCTTTGTGGCGCAGACCCTC
ATGATGGAGGGCGTTATTCCGTGGGTCGACCTCAGCGGATTGCTGATTGG
CTACGCCTGGCAGACTTTGTCGCTGAAAGGACTCCTGCGGGCTCCGAAGC
CCCTCGTCAACCTCTTCCGCAACAATGCCTACCTGCGAGCGGAGTACGCC
CGCGCCGGCAAGGAGTACGGGCAAGAGATC
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