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Homology
BLAST of mRNA_A-nodosum_M_contig8557.1.1 vs. uniprot
Match: A0A699PXU8_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PXU8_TANCI) HSP 1 Score: 49.7 bits (117), Expect = 5.390e-5 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 190 GRRPLVGVH------AESSEVVQETPLSLVN-------GWVAKAKSRLVARGFKQREGVDFSETFAP 351
G PL GVH A+SS V +P S++ G + K K+RLVARG++Q EG+DF E+FAP
Sbjct: 60 GNDPLFGVHIPEVTSAQSSSTV--SPQSIIYKVELDELGGILKNKARLVARGYRQEEGIDFEESFAP 124
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 355 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 234 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870240.2792394-UTR-A-nodosum_M_contig8557:947..1008 | 1680870240.2792394-UTR-A-nodosum_M_contig8557:947..1008 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig8557 948..1008 + |
| 1680870240.3162796-UTR-A-nodosum_M_contig8557:9829..9889 | 1680870240.3162796-UTR-A-nodosum_M_contig8557:9829..9889 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig8557 9830..9889 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870240.2904181-CDS-A-nodosum_M_contig8557:1008..1141 | 1680870240.2904181-CDS-A-nodosum_M_contig8557:1008..1141 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig8557 1009..1141 + |
| 1680870240.3047786-CDS-A-nodosum_M_contig8557:9728..9829 | 1680870240.3047786-CDS-A-nodosum_M_contig8557:9728..9829 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig8557 9729..9829 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8557.1.1 >prot_A-nodosum_M_contig8557.1.1 ID=prot_A-nodosum_M_contig8557.1.1|Name=mRNA_A-nodosum_M_contig8557.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
MVQKNTLTKRHLQINKKKHVRLSGRLHIEGRLNKGPLLQRNHKDVVHWSA FMPKALRSSRKHPYRWSMDGWQRLSRG* back to topmRNA from alignment at A-nodosum_M_contig8557:948..9889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig8557.1.1 ID=mRNA_A-nodosum_M_contig8557.1.1|Name=mRNA_A-nodosum_M_contig8557.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8942bp|location=Sequence derived from alignment at A-nodosum_M_contig8557:948..9889+ (Ascophyllum nodosum dioecious) AAACCAGTCATTCGGAAGGAAAGAACGTACGACATACTCTCCATACAAAG
AGGAAGCGGAAATGGTACAAAAAAATACTCTGACAAAGCGACATCTCCAA
ATAAACAAAAAGAAACACGTGCGGCTATCGGGGCGCCTGCATATCGAAGG
ACGATTGAACAAAGGGCCGCTGCTTCAACGAAATCATAAGGACGGTGCGT
TCTGTTTTTTTTTCTTTAAACCTCACCCTACTACCGTACTAGATTTTGAT
GGTAATGTACGACCCTCTCCCCCATCTCTATCGTCCAAGATCAGCAAGGA
CCAAACGTCCACTTTCTAGATATATGTGCGCAGATTATGCAATTATCTCC
AGGGATCTGTGAGTATGATACTAGCCTCGTATAGAAAGTTCCCTCATATT
GAGACAACTGTCTCCACGAGTTGTAAATGTGCTGTCCTCTTTAATAGTCA
GCTTTGTCGATTTGCATACTACCGTTGTACCAGGAGAGATTATTTTGTTG
ATGCTGCATCTAGACTAAATGAGAGATACGTTGCTTCATTGGTATGATCT
GAAATTCTTGCGGTGTAAACTATATAATTTCCAAGCTACGTTTTGGAGAA
CATCAATAGAAAACTTGTCGCGGCCCTTGGTAAAAAGACTCGTATAATAG
TTTGGAATAAATTGGTATTAGACATCTATTCGCCGGTCGCTCCGGTCGCT
CAGAGGTATCCATGTTGTTGTTGTTGTTGTCATCCCATATGCTGTTTGCG
TAGGATGTAaccttctgacACGTTGGGACGTGAGTTCGATTCCGGCAAAG
GGTATTTTTCTCCCTAAAAAAACTATAAACTCAAAATAAAAATGCCCAAC
GGGTGGAGAACGATTAAAGCGTTAGTACACAAAATTCGACTTCACGGTCG
ACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGAGAAAAATAAAGGCACG
CACCGCAGAAGGAAGGCGGATGAAAAATCCTGTGTGACCTTCCTCCTGTG
TGACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGAATAGGAA
GAAAACACACACACACATAAACTAAAGCCACACGACCTGTTACCTTGAAG
GTATAGTGTTGGACTTCCTATTAGCTAAGCTGAGTACCACTATCTGTGAT
GACCACTACCTACGTACGGTAGATTTAAAGTTAATTTGTTGGGTCGTATA
TAATTCTAGAAGTTTATGTAGCTCTATCTGGTTGCTGGATTGTAAACTTT
GTAGACGATTGTCTGTAAGTCTTATTATTACTAACTTAGTGTATATGGAG
AGAGTGTGTGTGTGTGTGTTTTCTTCCGATTCATTCTGGACATCAAGTTC
GTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTC
TCATCCACCTTATTTCTGCGGTGCGTGCCTTAATTTTTCTCGCGAGAAAG
ATTCCACGGTTGTGTTGAGTCGAGTAGAGTATTTAGAGTAGAGTATTGAA
AGCGGTACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTTGTACT
CAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTTGTACTCAAGCTTTG
AGTATTTTGAGTCGAGTATGGAAAGTCATACTCGATACTCGACTCATCGT
TGAGTATTTTGCCCGATACCGTACTCATACTCGAGTAGAGTATGGAAAGT
TGTACTCAAGCTATGAGTATGTTGAGTCGAGTATGGGAAGTTGTACTCAA
GCTATGAGTATTTTGAGTCGAGTATGGGAAGTTGTACTCAAGCTTTGAGT
ATTTTGAGTCGAGTATGGAAAGTCATACTCGATACTCGACTCATCGTTGA
GTATTTGCCCGATACCGTACTCATACTCGAGAGAGTATGGAAAGCGGTAC
TCAAGCTTTGAGTATTGTGAGTCGAGTATGGAAAGCGGTACTCAAGCTAT
GAGTATTTTGAGTAGAGTATGGAAAGCGGTACTCAAGCTATGAGTATGTT
GAGTCGAGTACATACTGAGTAGAATACTCGAGTAGTTGAGTAGTACTTTT
CTCACCACAACCTAAAAAACTAAAAATTAAACTACATATCACCCTACTTC
AATTcacCCCCCCTGCATTTTCACCCGCCCTCCCCGTTGGTCATAGCGGT
GAAAGGCTGAACGCTGCACCCCTGGTCGGTTGTCAACCGCCACCGATGGC
CTGTTTGCAAGCACTCGCACTAATCACTAATATATAGCAAAAGAGATATA
AAAAACCAAAATACTATACTTTCTATGGTAGTAATTTTGATATTGCACGA
CCGCAAAAGCAGTACGAAACAAAAAACAAAACAACTAGCTGCCCTACGCA
TGTCCTAGTTGATGTCTATGCCACTGGGAGTGGGAGGCGCGTTGTTGACC
AGCGGGTCAATCGACGCCTCTGCGTCCAGAAGATCCTTGTCCTGTCCGTC
GAACCTCGCGGGGAGGTGATTGCGGATGTCCTCCGATGCGATCTGGGGGA
TGTCCTTGTACGCCGGAATGGAGCTGTAGTTCGCCTTCAGGAACATCACT
ATTTCCACCCAGTAATGTCGGGGAGAAGCCCACCGTTATACTGTACACTT
ACATTAATCGCCATGCAGGGACACCAGAAAAGAAAAGAAAAGAAAAGAAA
AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA
AGATGTTGTTGTTTTTCACATTCAGCGTATTGGTTGCCAACCCGAAAAAA
CTACTTTACACAATGTCTGGGTACAAAATGCCCGCAGAATGACGTCACGA
AGACGAAGACATGTACTCAAACTTGAGTAGAGTATTGAGTACTTTGAGTC
GAGTATGGAAAGTCATACTCAAGCTTTGAGTATTTTTGAGTCGAGTATGG
AAAGAACTCGAGTCGACTATCTTGATACTGATACCGACTCATCGTTGAGT
AGTTTTGCCCGATACCGTATTTTAGTCTCATGCTCGAGTATTTTGAGTCG
AGTATGGACTCGAACTCGACTTGTGAGTATTTCGATACCGCTATGAGTAC
TCAAGCTTTGAGTATTTTGAGTCGAGTATGGGAAGTTGTACTAAGCTATG
AGCTTTGAGTATTTTGAATCGAGTATGAGTAGTACTCGACTCAACACAAA
TTTGAAAGATTCAGCCATTCCTTTGCCTCGTCGACCGTGAAGTCGAATTT
TGTGTACTAACGATTTATTTGCCCGTCGTTGTGTGTGTGTGTTTTCTTCC
CATCCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCACACA
GGAGGAAGGTCACACCGGATTTTTAATCCACCTTCCTTCTGCGGTGCGTG
CCTTGATTTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGAC
CGTGAAGTCGAATTTTGTGTACTAACGAATTAATCGTTCTCCACCCGTTG
GGCATTTTTATTTTGGTTTTTTAGTTTTTAGTGAGAAAAATCCCGTTTGC
CGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGTGCCGACT
GAGCTACCGGGGTCGACCGGCGTTGGCATTTTTATTTGTATTTTTATTTT
TGTAGTGAAGTACGCTATAAGTATTTAATCAATAATTTTACCATGTTTGT
AAATACATGTAATGTTATACCTGGTACATTATTACTATCATGTGTGTGTG
TGTGTGTTTTCTTCCCATCCATTCTGGACATCAAGTTCGTTGGACGTACC
AGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTTTAATCCACCTTC
CTTCTGCGGTGCATGCCTTGATTTTTGTCGCGAGAAGGATTCAGCCATTC
CTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAATTAATC
GTTCTCCACCCGTTGGGCATTTTTTTTTTTTTAGTTTTTTTTTtagTTTT
TAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACGTGTC
AGAAGGTTACGAGGTGCCAACTGAGCTACCGGGGTCGACCGGCTTGTATG
CAATTAATGAATCACTAGATACCCCGATCTTCTGTAGACTCTCTTCTCTG
CTAGCCCATGGTGGGCTTCCCCCGATATTACACTGTGACCTTTCAATGCG
ATGAAGAGCTTTTATGCCCTACAACCAATGTTCTTAAATTACATCCATCC
CTAGCTCTACACATACTACATATACAAAGTATGTACGCTGTAAGTATTTA
ATCAATAATTTACTAAATTTGTAACTAAATGTAATGCTATTCATTATCAC
TATCATGCAAAATTAATGAATCTCCCGGATACCTTCTTTCTGCTGGTCCA
TGGTGGGCTTCTCCTCGATAATGCACTGTGACATTTTAATACGATGTAGA
GCTTTTATCCCTGCAACCAATGTTCTTAAATGATATCCACCCCTACACAT
ATAGTCAATAAATGATCCTAAGATTAGCGACCTCTGAAAAAGATTCCAAC
AAGTTGTTATCTCATAATCTATCTTCTTCATATCATCCTAGTTATAACAG
TACATCCCTATACAGTTGCCAAATACTTCTAAGATTGGAGCCTCTGGACC
CTGGAGAAAATTCGCAGATGGAGACGAAGATTCAAAAACGTTTTTTAAAT
GCATCCGATGGTTGGAGGACTATATACCATGACCTGGGCGACTTGTTCAA
TGGACATCTTGGGTGCTGTAGGTCTACTTGGGTGTGAGGAGCCTGCCAGT
CATTTGATTTTGCAGCCGAAGCTCCTGAATTGTGTTAGGTCGCACGTGGA
CCTGTACTGTTTTGAGGAGCCTTCGTGTGCGCAGTAGACCTGACAGACAG
TAAAAAGAAAGGTTCTCCGCCTACCTGCTCCTCACTCCCTTGTACGACCT
ACGACTCTCCATTGCTGCGTCTATTTTCAGGTGAACAACGGTGTTTGGTT
TTTTTTTCTGGATTATGTTGAAGGCATCTGATCTGCCGGTCGCCCTCTTC
GCTTTCTTCAAATCTCTGACTCAAACCTTTTGGTTTTATCGTTACATATA
TTTGTACCTCATTCCTGTTGCGTTTACGCACATAACCTGTAAATCCATTA
TTGATGCTACAAGTAAATTACGCCTGCTTCCATTATATCAGTTTAAAGAA
AATAAATCTGAACGCATCTCAACCTTCCAATTAGTCAAAAGGTTTAGGTG
GGAACAGTGGCTGTAGGGACAAAAACTATTAAAAGGGTTCCCCAATGGAG
TCACATAGGGTCAACAGTATAATATCGGGGAAAAGCCCACCGTTACACTG
TACACTAAGTCAGACTTACATTGATCACCAGGTAGGGACACCAAAACAGA
AGCAAACTAGTTATTATACAGTAGTTTTGGACTAAGAGTTCCAGACTAAG
GTACAGTAATAATTCTATAGAGAAATTAAGTTAAAAAGAGGGTTTGGTGT
TGGTATTTCGAAGGCAGTCTAGGTCTACAGGTCATAGATGTGAAGGACCT
CAAATTTACAGCATGCCAACTGATGTATACATTTATGAAAGCAGGTGTTT
GAAGGTTTAGTTACATACAGTAGGGTCAAAAGGATAAATCGTGGATATGT
TACTCATTATACTATAAACCTTAGGTTAGGGATCAGAACTATAGTAATAT
GATCATAGTATTACGATAAAATATACCTACAGTTATCTACCATGAAACTG
TATGGGAGGTCTCGAATTACAACGGGCCTATAACATTGGTTTGAGGAGCT
TTCGCGTTTGTTTGCAGTAGACCTGACAGATAGTAAGGGAGGTTTTCCGC
CTACCTGCTGCTCATTTCCTTGTGCGTCCTACGACCCTCCATTGCTTCGT
CTACTTTCAAACAGCCAATTATGCGAATTGAGGATCGATTATTTGATAGA
GGATGGGTGAGGTCCGCAATGGCGACCAGAAAGTGCGGAAATATTTATTT
CCGGAAATATTTTATGGCCGTCAGGAAGTTCACCAATATTTTTGTACTTC
TGTTAGTATTAATGGTAGGTTCACGTGATACATTATTCCCCGTTTGCTTC
ACATAAAAAAATGTACGGACCGACCGACAGTGGCTGCTCCCAAATGTCAA
CCGTCAGAAGATGAACCCCCCGATCATTACACCGGTAATTTTTCTTTTTT
TTTTATAAATGGAATACGTGGTGACCCGTTTGGATACCAACGCGTTAAGT
AACTACCCGATTCATAAATGCGTAAATGAACTCTCCATAACATTAATTTA
AATACTTATTGCCTTTTCGTCTCACATAATCATTTATTTTAATATAAACC
GAAGTTGCAGAAGTTGAGATGAATTCATCATAACCCGAAATTAAAACACG
TGTCTGATAGTCCTTAAGTTTAAAAAACAATATAAAGTACTAGTCTGTTA
GACCGTTCTATTTTTTTAAATTAAAAGTGCTCGTATGAAAGGGCATTTTG
TTAATGGTAGGCTAGCTAGCTACCGGAATCATTTTTGCGGTTCTAGAATC
CCCTTAATCATTTACCGGAACCCGACATGTAAGGAGCTGTCTAATAATAA
TATTAGATATAGCTGCGAGAGAACATCCACACGCTGGTAGCAAGCAGATG
GCCACGTATCAAGCAGTAGTAGCTCAAACGAAGAGTAGCAGCAGCTCATC
AAATTTGTGCCAAATAATTCTTGAAAAAAGTTCTGAGGTGAACGATGGTC
GCCATTGCGGACCTCACCCATCCTCTATCAAATAATCGATCCTCAGTTCG
CATAATCGGCTGTTTTCAGGTGAACGATGGTGTTTGGTATTTTCTGTATT
ATGCTGAAGAGATCTGATCTGTATGTCGCCCTCTTCGATTTCTTCTAATC
TCTGAATCAAACCTTTTGGTTTTATCGTTACATATATTTGTACCTCATTC
CTGTTGCGTTTACGCACATAACCTGTAAATCCATTATTGATGCTACAAGT
AAATTACGCCTGCTTCCATTATATCAGTTTAAAGAAAATAAATCTGAACG
CATCTCAACCTTCCAATTAGTCAAAAGGTTTAGGTGGGAACAGTGGCTGT
AGGGACAAAAACTATTAAAAGGGTTCCCCAATGGAGTCACATAGGGTCAA
CAGTATAATATCGGGGAAAAGCCCACCGTTACACTGTACACTAAGTCAGA
CTTACATTGATCACCAGGTAGGGACACCAAAACAGAAAGAAGCAGACTAG
TTATTATACAGTAGTTTTGGACTAAGAGTTCCAGACTAAGGTACAGTAAT
AATTCTCTAGAGAAATTAACTTAAAAAGAGGGTTTGGTGTTGGTATTTCG
AAGGCAGTCTAGGTCTACAGGTCATAGATGTGAAGGACCTCAAATTTACA
GCATGCCAACTGATGCATACATTTATGAAAGCAGGTGTTTGAAGGTGTAA
TTACATACAGTAAGGTCAAAAGGATAAATCGTGGATGTGTTACTCATTAT
ACTATAAAACTTGCGTTAGAGATCAGGACTAAAGTAATATGGTCATAGTA
TTACGATAGAATATACCTACAGTTATCTATGAACTATATGGGAGGTTTCG
CATTACAACGGGCCTATAATAACTGGTATAATGGAAGCAGGCGTAATTTA
CTTGTAGCATCAATAATGGATTCACAGGTTATGTACGTAAACGTAAGAGG
AAAGAGGTACAAGTGTATGTAACGATAAAACCAGAAGGTTTGATTCAGAG
ATTAGAAGAAATCGAAGAGGGCGACCGGCAGATCAGATCTCTTCAGCATA
ATACAGAAAAGACCAAACACCATCGTTCACCTGAAAGTAGACGAAGCAAT
GGAGGGTCGTAGGACGCACAAGGAAATGAGCAGCAGGTAGGCGGAAAACC
TCCCTTACTATCTGTCAGGTCTACTGCAAACAAACGCGAAAGCTCCTCAA
ACCAATGTTATAGGCCCGTTGTAATTCGAGACCTCCCATACAGTTTTTTC
ATGGTAGATAACTGTAGGTATATTTTATCGTAATACTATGATCATATTAC
TATAGTCCTGATCCCTAACGTAAGTTTTATAGTATAATGAGTAACATATC
CACGATTTATCCTTTTGACCCTACTGTATGTAACTAAACCTTCAAACATC
TGCTTTCATAAATGTATACATCAGTTGGCATGCTGTAAATTTGATGTCCT
TCACATCTATGACCTGTAGACCTCGACTGCCTTCGAAATACCAACACCAA
ACCCTCTTTTTAACTTAATTTCTCTATAGAATTATTACTGTACCTTAGTC
TGGAACTCTTAGTCCAAAACTACTGTATAATAACTAGTCTGCTTCTGTTT
TGGTGTCCCTACATGGTGATTAATGTAAGTGTACAGTGTAACGGTGGGCT
TCTCCCCGATATTATATTGTTGACCCTATGTGACTCCATCGTGGAACCCT
TTTAATACCAGGTAGAGTTTTTGTCCCTACAACCATTGTTCACACCTAAA
CCTTTTGACTAATTGGAAAGTTTAGATGCGTTCAGATTTTTCTTTAAAAA
CAAACTTAACACCAGAGAAAGACGTCATGACATCTGCAAACCAAACGCCC
GGAGGGCACAAGTTCGCGCCACTTGTGGCTAGTCAACAAGGGTGAGCGAA
CCAGCATGAGCCCGCTTGCTTTGGGCTATCCTCTCCTTGGTCCTTCTCGT
CACGTTCGGGCATACCACCACTGCATGCCGTAGTCCAGCCTTGGTTTTTC
CTGCAGCGATCTATTTTGCCATGAAATGTTCCGCCCCTTGTTCTGCCGTT
CTGCGCCATTCCTCCTCGTCCTGGGCTGCAGTCGTCCATTGGTCGGCGTT
CATGCCGAAAGCTCTGAGGTCGTCCAGGAAACACCCTTATCGTTGGTCAA
TGGATGGGTGGCAAAGGCTAAGTCGAGGTTAGTAGCGCGTGGTTTCAAAC
AGCGTGAAGGAGTAGACTTTAGTGAGACGTTTGCCCCCACTG back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig8557:948..9889+ >mRNA_A-nodosum_M_contig8557.1.1 ID=mRNA_A-nodosum_M_contig8557.1.1|Name=mRNA_A-nodosum_M_contig8557.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig8557:948..9889+ (Ascophyllum nodosum dioecious) ATGGTACAAAAAAATACTCTGACAAAGCGACATCTCCAAATAAACAAAAA GAAACACGTGCGGCTATCGGGGCGCCTGCATATCGAAGGACGATTGAACA AAGGGCCGCTGCTTCAACGAAATCATAAGGACGTCGTCCATTGGTCGGCG TTCATGCCGAAAGCTCTGAGGTCGTCCAGGAAACACCCTTATCGTTGGTC AATGGATGGGTGGCAAAGGCTAAGTCGAGGTTAG back to top
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