mRNA_A-nodosum_M_contig8533.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8533.1.1
Unique NamemRNA_A-nodosum_M_contig8533.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8533.1.1 vs. uniprot
Match: A0A6H5L399_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L399_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 3.900e-5
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   37 QAFMKGATPRLLHKIPADALSFVTYE 114
            QAF+KGATPRLLHKIPA+A  FV YE
Sbjct:  453 QAFLKGATPRLLHKIPANAFFFVAYE 478
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8533.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L399_9PHAE3.900e-580.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8533contigA-nodosum_M_contig8533:7959..8072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJT3
PFAMsMito_carr
Model size114
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.39e-06
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
Cds size114
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870233.1585581-CDS-A-nodosum_M_contig8533:7958..80721680870233.1585581-CDS-A-nodosum_M_contig8533:7958..8072Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8533 7959..8072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8533.1.1prot_A-nodosum_M_contig8533.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8533 7959..8072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8533.1.1

>prot_A-nodosum_M_contig8533.1.1 ID=prot_A-nodosum_M_contig8533.1.1|Name=mRNA_A-nodosum_M_contig8533.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=38bp
HVRKDTHAFHVLQAFMKGATPRLLHKIPADALSFVTYE
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mRNA from alignment at A-nodosum_M_contig8533:7959..8072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8533.1.1 ID=mRNA_A-nodosum_M_contig8533.1.1|Name=mRNA_A-nodosum_M_contig8533.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at A-nodosum_M_contig8533:7959..8072+ (Ascophyllum nodosum dioecious)
CACGTGAGAAAAGACACCCACGCTTTTCACGTTTTGCAGGCGTTCATGAA
AGGCGCGACGCCGAGGCTCCTTCATAAGATCCCGGCAGACGCTCTGTCCT
TCGTCACGTATGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8533:7959..8072+

>mRNA_A-nodosum_M_contig8533.1.1 ID=mRNA_A-nodosum_M_contig8533.1.1|Name=mRNA_A-nodosum_M_contig8533.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=114bp|location=Sequence derived from alignment at A-nodosum_M_contig8533:7959..8072+ (Ascophyllum nodosum dioecious)
CACGTGAGAAAAGACACCCACGCTTTTCACGTTTTGCAGGCGTTCATGAA
AGGCGCGACGCCGAGGCTCCTTCATAAGATCCCGGCAGACGCTCTGTCCT
TCGTCACGTATGAA
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