mRNA_A-nodosum_M_contig1237.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KND2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND2_9PHAE) HSP 1 Score: 132 bits (333), Expect = 8.460e-34 Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMIVT---STIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASES 451
M DRRKRGA S RPR R RP QD+L K++A+A ++++VT ST+ Q PK RQ IHEPRRL W+EH D+RRR LFRRMYRM+EH+F+KLA+LLRPILERN++YA ++
Sbjct: 1 MGDRRKRGAPTESSGSLRPRARARPTHTQDVLNKLKAIAAIVLVVTVATSTVIQRLAPKARQPIHEPRRLDWDEHLEDVRRRKLFRRMYRMEEHSFNKLADLLRPILERNDFYARDA 117
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE) HSP 1 Score: 131 bits (329), Expect = 5.790e-30 Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMM---IVTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRRKRGA SPRPR R RP +LKK+ AV ++ +VTST+ Q PK RQ IHEPRRL WEEH D+RRR LFRRMYRM+EH+FDKLAELLRPILERN+Y A
Sbjct: 1 MADRRKRGAPTDSSGSPRPRARARPA-HTHVLKKLNAVVATVLLLTVVTSTVTQRFAPKARQPIHEPRRLDWEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSA 113
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.040e-27 Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMI---VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASESQ------VEIRESVAGCVLVNLRALSVYIL 523
MADRR+RG PRP R R D+L+KM+AVA ++++ VT+T+ Q PK R IHEPRRL WEEH D++RRG+FRRMYRM+EH+F+KLAELLRP LE N++YA + V+IR +VA +L L V +L
Sbjct: 1 MADRRERGVPADSARCPRPPARARHTNNADVLRKMKAVAAIVLVLTVVTTTVVQSFAPKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVL 147
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE) HSP 1 Score: 119 bits (298), Expect = 2.530e-27 Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMI---VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRR+RG PRP R R D+L+KM+AVA ++++ VT+T+ Q K R IHEPRRL WEEH D++RRG+FRRMYRM+EH+F+KLA+LLRP LE N++YA
Sbjct: 1 MADRRERGVPADSARCPRPPARARHTNNADVLRKMKAVAAIVLVLTVVTTTVVQSFATKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAQLLRPFLESNDFYA 114
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KXW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW2_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.060e-26 Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRF-RPCTRQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRRKRGA +G + P QRF R RQ+++++M+A A V+++V TS S K R +IHEPRRLVWE+H DL++R LFRRMYRM+E F+KLA LL PIL+RN+YYA
Sbjct: 1 MADRRKRGAPLGSSCAGPPGQRFMRASGRQELVRQMKAAAAVVILVLSXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYYA 119
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE) HSP 1 Score: 107 bits (267), Expect = 2.680e-22 Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMI-------VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRRKRGA +G + P QRFR + RQ+++++M+A A VTS S K R +IHEPRRLVWE+H DL++R LFRRMYRM+E F+KLA LL PIL+RN+Y A
Sbjct: 1 MADRRKRGAPLGSSCAGPPSQRFRRASGRQELVRQMKAAAAXXXXXXXXXXXVTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYDA 119
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JXA4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA4_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.170e-21 Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRRKR AL + P P QRFR + RQ+++++M+A A V+++V TS S K R +IHEPRRLVWE+H DL++R LFRRMYR++E F+KLA LL PIL+RN+YYA
Sbjct: 1 MADRRKR-ALGSSCAGP-PSQRFRRASGRQELVRQMKAAAAVVVLVLXXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRIEEPVFNKLAGLLEPILQRNDYYA 117
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.620e-21 Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
MADRRKRG+ +G + P QRFR + RQ+++++M+A A V+++V TS S K R +IHEPRRLVWE+H DL++R L RRMYRM+E F+KLA LL PIL+ +YYA
Sbjct: 1 MADRRKRGSPLGSSCAGPPSQRFRRASGRQELVRQMKAAAAVVVLVLXXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLLRRMYRMEEPVFNKLAGLLEPILQLYDYYA 119
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KS94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS94_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.280e-21 Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFRPCTR-QDMLKKMRAVAVVMMIVTSTIAQV----SGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASESQV 457
MADRRK GA +G + P QRFR + Q+++++++A A V S K R +IHEPRRLVWE+H DL++R +FRRMYRM+E F+K+A LL PIL+RN+YYA ++
Sbjct: 1 MADRRKLGAPLGSSCAGPPSQRFRRASGGQEVVRQLKAAAXXXXXXXXXXXXVTSVASANKTRAAIHEPRRLVWEDHAADLKKRKVFRRMYRMEEPVFNKVAVLLEPILQRNDYYARTERI 121
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.510e-17 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 2
Query: 110 MADRRKRGALVGLMSSPRPRQRFR-PCTRQDMLKKMRAVAVVM--MIVTSTIAQVSGPKV--RQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
M+ RRKR A + PRP R R T ++ +K VA+V +V +T+ PK R +HEPRRL W+EH DLRRR +FRR YRM+E FDKLA+LLRPILERN++YA
Sbjct: 1 MSGRRKRPAPAESAACPRPPARLRHTTTTAEVAEKKLLVALVATAFVVAATVFHALNPKAKARLPVHEPRRLDWDEHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYA 116 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1237.2.1 >prot_A-nodosum_M_contig1237.2.1 ID=prot_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=169bp MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMIVTSTIAback to top mRNA from alignment at A-nodosum_M_contig1237:61763..63166- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1237.2.1 ID=mRNA_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1404bp|location=Sequence derived from alignment at A-nodosum_M_contig1237:61763..63166- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1237:61763..63166- >mRNA_A-nodosum_M_contig1237.2.1 ID=mRNA_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=507bp|location=Sequence derived from alignment at A-nodosum_M_contig1237:61763..63166- (Ascophyllum nodosum dioecious)back to top |