mRNA_A-nodosum_M_contig1237.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1237.2.1
Unique NamemRNA_A-nodosum_M_contig1237.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KND2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 8.460e-34
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMIVT---STIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASES 451
            M DRRKRGA      S RPR R RP   QD+L K++A+A ++++VT   ST+ Q   PK RQ IHEPRRL W+EH  D+RRR LFRRMYRM+EH+F+KLA+LLRPILERN++YA ++
Sbjct:    1 MGDRRKRGAPTESSGSLRPRARARPTHTQDVLNKLKAIAAIVLVVTVATSTVIQRLAPKARQPIHEPRRLDWDEHLEDVRRRKLFRRMYRMEEHSFNKLADLLRPILERNDFYARDA 117          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.790e-30
Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMM---IVTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRRKRGA      SPRPR R RP     +LKK+ AV   ++   +VTST+ Q   PK RQ IHEPRRL WEEH  D+RRR LFRRMYRM+EH+FDKLAELLRPILERN+Y A
Sbjct:    1 MADRRKRGAPTDSSGSPRPRARARPA-HTHVLKKLNAVVATVLLLTVVTSTVTQRFAPKARQPIHEPRRLDWEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSA 113          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.040e-27
Identity = 73/147 (49.66%), Postives = 96/147 (65.31%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMI---VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASESQ------VEIRESVAGCVLVNLRALSVYIL 523
            MADRR+RG        PRP  R R     D+L+KM+AVA ++++   VT+T+ Q   PK R  IHEPRRL WEEH  D++RRG+FRRMYRM+EH+F+KLAELLRP LE N++YA +        V+IR +VA  +L     L V +L
Sbjct:    1 MADRRERGVPADSARCPRPPARARHTNNADVLRKMKAVAAIVLVLTVVTTTVVQSFAPKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVL 147          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.530e-27
Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMI---VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRR+RG        PRP  R R     D+L+KM+AVA ++++   VT+T+ Q    K R  IHEPRRL WEEH  D++RRG+FRRMYRM+EH+F+KLA+LLRP LE N++YA
Sbjct:    1 MADRRERGVPADSARCPRPPARARHTNNADVLRKMKAVAAIVLVLTVVTTTVVQSFATKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAQLLRPFLESNDFYA 114          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KXW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.060e-26
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRF-RPCTRQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRRKRGA +G   +  P QRF R   RQ+++++M+A A V+++V       TS     S  K R +IHEPRRLVWE+H  DL++R LFRRMYRM+E  F+KLA LL PIL+RN+YYA
Sbjct:    1 MADRRKRGAPLGSSCAGPPGQRFMRASGRQELVRQMKAAAAVVILVLSXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYYA 119          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.680e-22
Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMI-------VTSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRRKRGA +G   +  P QRFR  + RQ+++++M+A A            VTS     S  K R +IHEPRRLVWE+H  DL++R LFRRMYRM+E  F+KLA LL PIL+RN+Y A
Sbjct:    1 MADRRKRGAPLGSSCAGPPSQRFRRASGRQELVRQMKAAAAXXXXXXXXXXXVTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYDA 119          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JXA4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.170e-21
Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRRKR AL    + P P QRFR  + RQ+++++M+A A V+++V       TS     S  K R +IHEPRRLVWE+H  DL++R LFRRMYR++E  F+KLA LL PIL+RN+YYA
Sbjct:    1 MADRRKR-ALGSSCAGP-PSQRFRRASGRQELVRQMKAAAAVVVLVLXXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLFRRMYRIEEPVFNKLAGLLEPILQRNDYYA 117          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.620e-21
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCT-RQDMLKKMRAVAVVMMIV-------TSTIAQVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            MADRRKRG+ +G   +  P QRFR  + RQ+++++M+A A V+++V       TS     S  K R +IHEPRRLVWE+H  DL++R L RRMYRM+E  F+KLA LL PIL+  +YYA
Sbjct:    1 MADRRKRGSPLGSSCAGPPSQRFRRASGRQELVRQMKAAAAVVVLVLXXXXXXTSVAVHASANKTRAAIHEPRRLVWEDHAADLKKRKLLRRMYRMEEPVFNKLAGLLEPILQLYDYYA 119          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5KS94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS94_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.280e-21
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFRPCTR-QDMLKKMRAVAVVMMIVTSTIAQV----SGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYASESQV 457
            MADRRK GA +G   +  P QRFR  +  Q+++++++A A            V    S  K R +IHEPRRLVWE+H  DL++R +FRRMYRM+E  F+K+A LL PIL+RN+YYA   ++
Sbjct:    1 MADRRKLGAPLGSSCAGPPSQRFRRASGGQEVVRQLKAAAXXXXXXXXXXXXVTSVASANKTRAAIHEPRRLVWEDHAADLKKRKVFRRMYRMEEPVFNKVAVLLEPILQRNDYYARTERI 121          
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.510e-17
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  110 MADRRKRGALVGLMSSPRPRQRFR-PCTRQDMLKKMRAVAVVM--MIVTSTIAQVSGPKV--RQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELLRPILERNEYYA 442
            M+ RRKR A     + PRP  R R   T  ++ +K   VA+V    +V +T+     PK   R  +HEPRRL W+EH  DLRRR +FRR YRM+E  FDKLA+LLRPILERN++YA
Sbjct:    1 MSGRRKRPAPAESAACPRPPARLRHTTTTAEVAEKKLLVALVATAFVVAATVFHALNPKAKARLPVHEPRRLDWDEHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYA 116          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1237.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KND2_9PHAE8.460e-3458.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDE6_9PHAE5.790e-3064.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE1.040e-2749.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMM2_9PHAE2.530e-2754.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXW2_9PHAE4.060e-2653.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ6_9PHAE2.680e-2252.10DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JXA4_9PHAE2.170e-2152.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV75_9PHAE2.620e-2150.42DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KS94_9PHAE9.280e-2146.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE6_9PHAE3.510e-1750.00DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1237contigA-nodosum_M_contig1237:61763..63166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1404
Hectar predicted targeting categorysignal anchor
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.6446881-UTR-A-nodosum_M_contig1237:61762..625501680866664.6446881-UTR-A-nodosum_M_contig1237:61762..62550Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1237 61763..62550 -
1680866664.6646225-UTR-A-nodosum_M_contig1237:63057..631661680866664.6646225-UTR-A-nodosum_M_contig1237:63057..63166Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1237 63058..63166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866664.654071-CDS-A-nodosum_M_contig1237:62550..630571680866664.654071-CDS-A-nodosum_M_contig1237:62550..63057Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1237 62551..63057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1237.2.1prot_A-nodosum_M_contig1237.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1237 62551..63057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1237.2.1

>prot_A-nodosum_M_contig1237.2.1 ID=prot_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=169bp
MADRRKRGALVGLMSSPRPRQRFRPCTRQDMLKKMRAVAVVMMIVTSTIA
QVSGPKVRQSIHEPRRLVWEEHKVDLRRRGLFRRMYRMDEHTFDKLAELL
RPILERNEYYASESQVEIRESVAGCVLVNLRALSVYILIVLLVSAALRSV
LVTNSLLHWTQLLNMVHS*
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mRNA from alignment at A-nodosum_M_contig1237:61763..63166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1237.2.1 ID=mRNA_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1404bp|location=Sequence derived from alignment at A-nodosum_M_contig1237:61763..63166- (Ascophyllum nodosum dioecious)
CCAATCTCTTCCAAGTTTCTGCCACACTTTCCAAGTTCGCCGGCAACGAA GCGTAAGGACTCCGTAGGCGGTACCACGAGGTCCTCACTATCGGGTATCG GCTAGGGCCATGGCTGACCGTAGAAAGCGCGGTGCCCTTGTTGGTTTGAT GTCCTCTCCTCGACCGAGGCAGCGCTTCCGACCCTGCACTCGGCAAGACA TGCTCAAGAAGATGAGAGCAGTAGCTGTGGTGATGATGATCGTAACATCG ACCATCGCTCAAGTATCTGGACCCAAGGTGCGGCAGTCCATCCACGAGCC GCGGCGTTTGGTGTGGGAAGAGCACAAGGTAGACCTCAGACGGCGGGGAC TCTTTCGCAGAATGTACCGCATGGATGAGCACACCTTCGACAAGCTGGCG GAGCTGTTGCGACCGATACTCGAGCGGAACGAGTACTATGCAAGTGAGAG CCAAGTGGAGATACGCGAGAGTGTAGCCGGGTGTGTACTTGTTAACCTTC GCGCTCTCTCCGTGTACATACTTATAGTTCTGCTCGTGAGTGCTGCTCTA CGTAGTGTCCTTGTGACGAACTCTCTTTTGCATTGGACACAACTGCTGAA TATGGTACATAGTTAGTGTCCTTGTGACGAACTCTATTGTACATTGGACA CAACTAACTACTGAATATGGTACGTAGCTGTAGTGCTGCACGTGAGTGCT GCTCTACCTCGTGTCTTAGTGACCAACTCTCTTTTACCATTACAATCGTT CATTGTACACAACTGCTGTATATGGTACGTAGTTGTAGTTCTGCTCGTGA GTGCTGCTCTACGTCGTGTCCTTAAGACCAACTCCCTTTTACCATTACAA TCCTTCATTGGACACAACAACTGTATATTGTACGTAGTTGTAGTTCTGCA CGTGAGTGCTGCCTTACGTAGTGTCCTTGTAACCAACTCCCTTTTACCAT TACAATCGTTCATCGGACACAACTGCTGTATATGATACGTAGTTGTAGTT CTGCTCGCGAGTGCTTCTCTACGCAGTGTCTTTGTGACCAACTCCCTTTT ACCATTACAATCGTTCATTGGACACAACTACTGTATATGGTACGTAGTTG TAGTTCTGCACGTGAGTGCTGCCCTACGTAGTGCCCTTGTGACCAACTTC CCTTTACCATTACAATCGTTCATTGGACACAACTGCTGTATATCATACGT AGTTGCAGTTCTGCTCGTGATTTGTACTTACGTCATGTCCTTGTGACGAA CTCTCTTTTACATTGGACATAACTGCTGAATATGGTACGTACCTGTAGTT CTGGTCGTGAGTGTTGCTCTGGTAGTGTGTAAAGAAAATTCAGAACGCGC CTAGACCTTCTGAGCATCCCCCAGTCAGGGTGAACAAATGTCAAAACGTT TAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1237:61763..63166-

>mRNA_A-nodosum_M_contig1237.2.1 ID=mRNA_A-nodosum_M_contig1237.2.1|Name=mRNA_A-nodosum_M_contig1237.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=507bp|location=Sequence derived from alignment at A-nodosum_M_contig1237:61763..63166- (Ascophyllum nodosum dioecious)
ATGGCTGACCGTAGAAAGCGCGGTGCCCTTGTTGGTTTGATGTCCTCTCC
TCGACCGAGGCAGCGCTTCCGACCCTGCACTCGGCAAGACATGCTCAAGA
AGATGAGAGCAGTAGCTGTGGTGATGATGATCGTAACATCGACCATCGCT
CAAGTATCTGGACCCAAGGTGCGGCAGTCCATCCACGAGCCGCGGCGTTT
GGTGTGGGAAGAGCACAAGGTAGACCTCAGACGGCGGGGACTCTTTCGCA
GAATGTACCGCATGGATGAGCACACCTTCGACAAGCTGGCGGAGCTGTTG
CGACCGATACTCGAGCGGAACGAGTACTATGCAAGTGAGAGCCAAGTGGA
GATACGCGAGAGTGTAGCCGGGTGTGTACTTGTTAACCTTCGCGCTCTCT
CCGTGTACATACTTATAGTTCTGCTCGTGAGTGCTGCTCTACGTAGTGTC
CTTGTGACGAACTCTCTTTTGCATTGGACACAACTGCTGAATATGGTACA
TAGTTAG
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