prot_A-nodosum_M_contig85.36.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig85.36.2
Unique Nameprot_A-nodosum_M_contig85.36.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length280
Homology
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 2.160e-129
Identity = 202/278 (72.66%), Postives = 236/278 (84.89%), Query Frame = 0
Query:    1 MRAGSGXXXXXALLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMART 278
            +RAG  XXXXX +LPR+KL+ QAVY GM+K TAAKL+DG D+AL++WSTY TGFLPPPDV  MTK+LDPL+DV++++WGG+EQAER+RLFVSR G  +     +++ EV A+EIGGQFLFD ADH DFLG+I+  GVTRDGIGDILVQGERGA VLVDPVMAE L GSLTSVR+V V V+ IPL+ELAVRP K KDVSTVEASLRLDSVASAGMGMSRSKMS AIK G VLVNWK   S +++VKEGD+VTVRGKGRVE+  ITVTKKGRYK++M RT
Sbjct:   53 LRAGGRXXXXXGVLPREKLLKQAVYEGMEKLTAAKLLDGADSALKTWSTYTTGFLPPPDVNVMTKLLDPLLDVEVQSWGGHEQAERKRLFVSREGVSAS----ELESEVVALEIGGQFLFDMADHRDFLGAIVNLGVTRDGIGDILVQGERGAHVLVDPVMAEFLAGSLTSVRSVKVKVRPIPLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAAGSGTTDVKEGDVVTVRGKGRVEIGDITVTKKGRYKINMRRT 326          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: A0A836CE46_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE46_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.590e-93
Identity = 152/279 (54.48%), Postives = 202/279 (72.40%), Query Frame = 0
Query:    1 MRAGSGXXXXXALLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDM--DVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            M+AG       ++LP+DKL++QA+Y G+DK+ A +++D   +ALR+W    T FL PP+   M  +L+ L+D+   AWGG+E+AER+R+F +  G     VDM   V   V A+E+GGQFLFD ADH D+LGSILGTG+ R  +GDILVQGERGAQVL  P +A++LC +L+SVR+V V V ++PL EL V PP  K V++VEASLRLD++ASAGMGMSRSKM++AIK G V VNW+     SSEVK  D++TVRGKGR+E++ I  TKK RY+V M R
Sbjct:    1 MKAGGS-----SVLPKDKLLSQAMYGGVDKQVATRVLDAAASALRNWELMATDFLTPPEYNVMLNVLEGLVDLQAIAWGGHEEAERRRMFFAHDG-----VDMATSVAVGVVALEVGGQFLFDMADHRDYLGSILGTGIERQKVGDILVQGERGAQVLCHPDIADYLCTNLSSVRSVTVKVDQVPLTELKVSPPIKKHVTSVEASLRLDAIASAGMGMSRSKMADAIKSGMVFVNWREAKGPSSEVKASDVITVRGKGRLEILEIHETKKERYRVVMNR 269          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: A0A251WKT0_9CYAN (Photosystem II S4 domain protein n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WKT0_9CYAN)

HSP 1 Score: 258 bits (659), Expect = 1.010e-82
Identity = 132/265 (49.81%), Postives = 186/265 (70.19%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LPR+ L+        ++ET A+++D  + A+++W   +T FL PP++A + +I   L D+ L  WGGY QAERQR+ ++R+      +D + + E+ A+EI G FLFD A H DFLG++LGTG+ RD +GDI+V GERGAQ +V P +AE L   LT VR+V V  + IPL EL +R PK K+++TVEAS+RLD++ASAG GMSRSKM++ I  G V VNWK ++STS  VK GD++ VRGKGRVEV  + +TKK RY+V++ R
Sbjct:    1 MLPREDLLKGVE----NRETVAQVIDRAEQAIKTWEVVQTDFLAPPELAEVQQIFSRLTDIHLLTWGGYPQAERQRVAIARSEI---PLDQETQVELTALEIAGNFLFDTATHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELAEFLAMQLTQVRSVPVKTRPIPLTELKIREPKKKELTTVEASMRLDAIASAGFGMSRSKMADLITSGDVRVNWKEISSTSHPVKSGDLIAVRGKGRVEVGDVAITKKDRYRVNLTR 258          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: E0U6R7_GLOV7 (Photosystem II S4 domain protein n=1 Tax=Gloeothece verrucosa (strain PCC 7822) TaxID=497965 RepID=E0U6R7_GLOV7)

HSP 1 Score: 251 bits (642), Expect = 3.680e-80
Identity = 135/266 (50.75%), Postives = 184/266 (69.17%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKG-EVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LPR++L+        ++E  A+++D  + A+R+W    T FL PP +A + +I   L +VDL  WGGY QAERQRL +SR+      V  D+ G  V AV+I G FLFDAA+H DFLG++LGTG+ R+ +GDI+V GERGAQ +V P + E L  SL  VR+V V  +RI L +L VRPP+ K+++TVEAS+RLD++ASAG GMSRSKM+EAI  G V VNWK +T  S  V  GD++++RGKGR+EV  + VTKK RY+V + R
Sbjct:    1 MLPREELLKGVE----NREEIARIIDKAETAMRTWEVTLTDFLSPPVLAEVQRIFQRLTEVDLIPWGGYPQAERQRLGISRS-----EVPFDLSGVAVAAVDIAGNFLFDAANHRDFLGAMLGTGLVREKVGDIIVLGERGAQAIVVPELVEFLETSLVQVRSVPVKTERIELTDLKVRPPQKKEMTTVEASMRLDAIASAGFGMSRSKMAEAISSGDVRVNWKEITQASHNVSSGDLISMRGKGRLEVGEVAVTKKERYRVQLTR 257          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: UPI00168261D1 (photosystem II S4 domain protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI00168261D1)

HSP 1 Score: 251 bits (641), Expect = 5.210e-80
Identity = 132/268 (49.25%), Postives = 184/268 (68.66%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGE---VEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LP+D+L+        ++ET A+++D T+ A+R+W    TGFL PP++     +   L +V   AWGGY QAERQRL ++R       +D+ ++ E   +  +++ G FLFD A H DFLGS+LGTG+ RD IGDILV GERGAQ +VDP + E L  +LT VR+V V  + +   EL VRPP+ K+++TVEASLRLD+VASAG GMSRSKM++ I  G V VNWKT+T +S  V+ GD+V +RGKGR+E+  + VTKK RY+V++ R
Sbjct:    1 MLPKDELLKHVE----NRETLARILDQTEQAIRTWEVVVTGFLSPPELVEAQDLFRRLTEVHTAAWGGYPQAERQRLAIAR-------IDLPLEPEQIPLALIDLAGNFLFDPASHRDFLGSLLGTGLVRDKIGDILVMGERGAQAIVDPELVEFLELNLTQVRSVPVKTRALDWSELKVRPPQKKELTTVEASLRLDAVASAGFGMSRSKMADMITAGDVRVNWKTITQSSHNVQSGDLVAIRGKGRLEIGEVAVTKKERYRVNLTR 257          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: K9S3C7_9CYAN (Photosystem II S4 domain protein n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S3C7_9CYAN)

HSP 1 Score: 250 bits (639), Expect = 1.050e-79
Identity = 133/268 (49.63%), Postives = 182/268 (67.91%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKG-EVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMARTM 279
            +LPRD+L+ +A     ++E AA+L+D  + A+++W    T FL PP++A   ++   L +V L  WGGY QAERQRL ++R       + ++    EV  +EI G FLFD A H DFLG++LGTG+ RD +GDI+V G+RGAQ LV P M + L  SLT VR+V V  + I L EL VR PK K+++TVEAS+RLD++ASAG GMSRSKM++ I  G V VNW+ VT  S +VK GD+V VRGKGR+E+  + VTKK RY++ + R M
Sbjct:    1 MLPRDELLQKA----QNREAAAQLIDAAERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMGWGGYPQAERQRLAIARP-----EIPLEASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDKVGDIVVLGDRGAQALVVPEMVDFLAMSLTQVRSVPVKTQPIDLAELKVREPKKKEMTTVEASMRLDAIASAGFGMSRSKMADLITGGDVRVNWRDVTQASYQVKAGDLVAVRGKGRLEIGEVAVTKKDRYRIQLTRLM 259          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: A0A6P0TDE9_9CYAN (Photosystem II S4 domain protein n=1 Tax=Cyanothece sp. SIO2G6 TaxID=2607797 RepID=A0A6P0TDE9_9CYAN)

HSP 1 Score: 249 bits (637), Expect = 2.100e-79
Identity = 132/266 (49.62%), Postives = 185/266 (69.55%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMD-KETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LP+D L+      G++ +E  ++++D  + A+R+W    T FL PP++    ++ + L D++L AWGGY QAERQRL ++R+      +D D + E+ A+ I G FLFD A H DFLG++LGTG+ R+ +GD+LV G+RGAQ +V P + E L  SLT VR+V V  KR+PL EL VRPPK K+++TVEASLRLD++ASAG GMSRSKM   I  G V VNWKT+T  S  +  GD+V++RGKGR+EV  I +TKK RY+V++ R
Sbjct:    1 MLPKDDLLK-----GLENREAVSRVIDRANQAIRTWEVVLTDFLSPPELFEAQQMFERLTDINLLAWGGYPQAERQRLAIARSEL---PLD-DSQVELVALSIAGNFLFDTATHRDFLGALLGTGIVREKVGDVLVLGDRGAQAIVVPELVEFLTMSLTQVRSVPVTTKRLPLDELKVRPPKKKEMTTVEASLRLDAIASAGFGMSRSKMVNLINSGDVRVNWKTITQASHSLNAGDLVSIRGKGRLEVGEINITKKERYRVELTR 257          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: A0A563VPY8_9CYAN (Photosystem II S4 domain protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VPY8_9CYAN)

HSP 1 Score: 249 bits (637), Expect = 2.100e-79
Identity = 134/267 (50.19%), Postives = 185/267 (69.29%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGEVE--AVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LPR++L+ +      ++E  A+++D  + A+++W    T FL PP +  +T+I   L +++   WGGY QAER R  ++R       + ++ K ++E  A++I G FLFD A H DFLGSILGTG+TRD +GDILV GERGAQV+V P M E L  +LT VR+V V  +RI L EL +RPPK K+++TVEAS+RLD+VASAG GMSRSKM+  I  G V VNWK +T  S  VK GD+++VRGKGR+EV  ++VTKK RY+VD+ R
Sbjct:    1 MLPREELLKRVE----NREEIARVIDKAEQAIKNWEVVCTDFLSPPVIIEVTEIFQNLTEIEFLNWGGYPQAERTRFGLARP-----DIPLE-KSQIELAALDIAGNFLFDTATHRDFLGSILGTGITRDKVGDILVLGERGAQVIVVPEMVEFLETALTQVRSVAVKTQRIDLSELKIRPPKKKEMTTVEASMRLDAVASAGFGMSRSKMANMISSGDVRVNWKDITQASHNVKAGDLISVRGKGRLEVGEVSVTKKQRYRVDLVR 257          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: UPI001F33A8A9 (photosystem II S4 domain protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F33A8A9)

HSP 1 Score: 249 bits (636), Expect = 2.980e-79
Identity = 130/266 (48.87%), Postives = 182/266 (68.42%), Query Frame = 0
Query:   13 LLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKG-EVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            +LPRD L+        ++E  A+++D  + A+++W    T FL PP++A + ++   L +V L AWGGY QAERQRL ++RA      + +D     + A+EI G FLFD A H DFLG++LGTG+ R+ +GDILV GERGAQ +V P +AE L  +LT VR+V V  +R+ L EL +R PK K+++TVEAS+RLD++ASAG GMSR+KM+E I  G V VNWK +TS S  +K GD++ +RGKGRVEV  + +TKK RY+V + R
Sbjct:    1 MLPRDDLLKGVE----NREAVARVIDQAEQAIKTWDVVATDFLSPPELAEVREVFSRLTEVHLMAWGGYPQAERQRLAIARA-----ELPLDTDSVALTALEIAGNFLFDPATHRDFLGALLGTGIVREKVGDILVLGERGAQAIVVPEIAEFLEMNLTQVRSVPVKTRRLELSELKIREPKKKELTTVEASMRLDAIASAGFGMSRNKMAEMINAGDVRVNWKEITSASHPMKSGDLIAIRGKGRVEVGEVAITKKDRYRVQLTR 257          
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Match: UPI0019A8797B (Photosystem II S4 domain protein n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019A8797B)

HSP 1 Score: 249 bits (635), Expect = 4.500e-79
Identity = 131/266 (49.25%), Postives = 182/266 (68.42%), Query Frame = 0
Query:   12 ALLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTYKTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGSVDMDVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGERGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTVEASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 277
            A LPR+ L+ +A +    ++T A+L+D  + ALR WS   + FL PP++A    +   L++VD   WGGY QAERQRL ++R G      D+ V G    ++I G FLFDAA H D+LG+++GTG+ R  +GDILV G+RGAQ L+ P M E L   L ++R+V V V  IP  EL VRPP+ K+++TVEASLR+D++ SAG+G+SR+KM+EAI+ G V +NWKTVT  S  V+ GD +++RGKGR+EV  I  TKKGRY+V + R
Sbjct:    2 ATLPREDLLKRAEH----RDTLARLIDLAEIALRDWSVVYSDFLSPPEIAEAQTLFGRLVEVDCAVWGGYAQAERQRLAIAREGIPIEVADIPVTG----IDIRGNFLFDAATHRDYLGALVGTGIVRGKVGDILVLGDRGAQALIVPEMTEFLQMELKNIRSVPVQVVVIPATELRVRPPQTKEITTVEASLRIDAIGSAGLGLSRNKMAEAIESGEVTLNWKTVTQASKSVQTGDRISMRGKGRLEVGEIDTTKKGRYRVQLVR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig85.36.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7Q1_9PHAE2.160e-12972.66S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CE46_9STRA3.590e-9354.48S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A251WKT0_9CYAN1.010e-8249.81Photosystem II S4 domain protein n=2 Tax=unclassif... [more]
E0U6R7_GLOV73.680e-8050.75Photosystem II S4 domain protein n=1 Tax=Gloeothec... [more]
UPI00168261D15.210e-8049.25photosystem II S4 domain protein n=1 Tax=Pseudanab... [more]
K9S3C7_9CYAN1.050e-7949.63Photosystem II S4 domain protein n=1 Tax=Geitlerin... [more]
A0A6P0TDE9_9CYAN2.100e-7949.62Photosystem II S4 domain protein n=1 Tax=Cyanothec... [more]
A0A563VPY8_9CYAN2.100e-7950.19Photosystem II S4 domain protein n=1 Tax=Hyella pa... [more]
UPI001F33A8A92.980e-7948.87photosystem II S4 domain protein n=1 Tax=Leptodesm... [more]
UPI0019A8797B4.500e-7949.25Photosystem II S4 domain protein n=1 Tax=Gloeobact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 204..264
e-value: 3.5E-8
score: 43.2
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 205..250
e-value: 5.0E-9
score: 35.7
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 205..261
e-value: 1.25555E-10
score: 54.563
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 203..255
e-value: 3.4E-10
score: 41.3
NoneNo IPR availableGENE3D3.30.1370.160coord: 25..93
e-value: 2.8E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR32219RNA-BINDING PROTEIN YLMH-RELATEDcoord: 28..277
NoneNo IPR availablePANTHERPTHR32219:SF3RNA-BINDING PROTEIN YLMH-RELATEDcoord: 28..277
NoneNo IPR availablePROSITEPS50889S4coord: 204..265
score: 11.8864
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 108..265
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 105..188
e-value: 1.5E-18
score: 68.4
IPR040591YlmH, putative RNA-binding domainPFAMPF17774YlmH_RBDcoord: 109..186
e-value: 1.4E-11
score: 44.6
IPR017506Photosystem II S4TIGRFAMTIGR03069TIGR03069coord: 28..277
e-value: 1.0E-82
score: 275.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig85contigA-nodosum_M_contig85:691598..785715 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig85.36.2mRNA_A-nodosum_M_contig85.36.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig85 680226..785881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig85.36.2 ID=prot_A-nodosum_M_contig85.36.2|Name=mRNA_A-nodosum_M_contig85.36.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=280bp
MRAGSGGGGGGALLPRDKLVNQAVYLGMDKETAAKLVDGTDAALRSWSTY
KTGFLPPPDVAAMTKILDPLMDVDLKAWGGYEQAERQRLFVSRAGSGSGS
VDMDVKGEVEAVEIGGQFLFDAADHGDFLGSILGTGVTRDGIGDILVQGE
RGAQVLVDPVMAEHLCGSLTSVRTVNVNVKRIPLQELAVRPPKLKDVSTV
EASLRLDSVASAGMGMSRSKMSEAIKRGTVLVNWKTVTSTSSEVKEGDIV
TVRGKGRVEVVGITVTKKGRYKVDMARTM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040591YlmH_RBD
IPR017506PSII_S4