mRNA_A-nodosum_M_contig85.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI) HSP 1 Score: 483 bits (1244), Expect = 2.800e-149 Identity = 365/891 (40.97%), Postives = 457/891 (51.29%), Query Frame = 2
Query: 734 FMRDLTACNGLQFRFSGREDEVTRHRRAVKRRIEQQERMVRRPSLGEFKTLLKTEIMKGIGDDTHEPPRAFRKIHRGRGTIITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREVCNWLDGIEKEQEE----------------------QQGKTGSVFQPESESSDIAGSKRRMLEAQAKAKAALERVLKRTMAESEELLREKILGSIGGGAFELLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWVGGVDARGGCGSSL------------HLGNAGGSDEQGEDTSGDCRAGLKKSPAERAQERVTQAFHKQAGQMTPEELHVILRNKLLSTVKPGGATLQRTYRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIVYSETLKPEDPRQAVARGADGAGVGDADNLFPGLADTAHGRSDALFRS---GAICTENSSETSAREGGEVEGDIESEGGIGGATDGGNYGGVLFGGESARDKEKPGRW--GGEDLAERASEGTLPLSKECRSTSLLSCSAVIGARAENKIRGCLHNRWRPMLAAFRRRDESFSGVITRAEFWQVLSENNATQVLADGDMEALAVKHALPGGRVDYQRFMKHLLLSGQDGKYRSRAASVHGIERVSGAPGANAGAGSQQGLANRPSSMTAVSLDKMKLGLAGSKSTGALGPCSSVRQPDFSRRCQNNGKMSPINIDIDFDAYNTGKSKEKWREESDDGRLRARAITLCRKLQPHVSHVWKPLWKDLKDADASATKSNAIIRRNKQYRGYSYNCNTVGCNAKRRASNGTWCGDSSNAGITTSASR----GISRSTATGEVETHVFSKVLAR 3277
FMR+L + NGLQ R S EDE RHRR V RRI+ QE VRRPS+G+ K LLK +I+ IG E RAFRK+ G GT+I FRE V+KL LG TEPEI+ F+SF+A+ GGIDF E C W++ + +E +G+ G F+P S SD + SKR+M +AQAK KAA ERV +RTMAE+E+LLR+KILGSIGGG F+LLRAFR+MHRGRGT+++LNDFR+AV F+LGL E EVE FFKGFD DGSGGIDF+EFC WVGG DA G L + G +DT+ K+PA RAQERVT+AF +QAG G+ L DFKEAVHRYGMG+TD QVE+LFRRYD D SG ID+ FLKLI+Y+E L P++P + G+G P D A R R G I EN++ + E N+G L G E G G +A + + P+ C L S GA+AE K++ C+ +RWR ML+AFRR D +G +T EF QVL+ N A Q L GD+ ALA KHA+ GRVDY RFM+HLLL +G R A G+ R + G G + P +A S + GL S STGAL ++ P S R ++ P+ D + +G E LR RAI +CR+LQPH+ VWKPLWKD K AD S+T A RR + G CG AG +S R G R G+VE HVF VLAR
Sbjct: 59 FMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQEDCVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKLSLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEATDDSADEPGXXXXXXXXXXXXXXXXXXXTSKGREGG-FRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVAGEGGWDDDTT--------KTPAMRAQERVTRAFREQAG------------------------------------------GVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEPLETPV------GLG-----TPPCPDAACDRPRGGVRPLTPGWISDENAATADGTSNDNTD-KRERNXXXXXXXXXXNFGN-LPGKEXXXXXRSAGEGCGAGPHVASKRQGRSRPV---CEQPVLGSSPVTNGAKAEEKMKACVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLG--NGPAGDRPAG--GVGRDNDEDGGGRG--------SSPRHRSATSAKATRPGLKVSMSTGALPAPGAISSP--SPRRDRLHQLRPL--DRQAARHGSGGGXXXXGNE-----LRDRAIAICRELQPHIVSVWKPLWKDFKAADESSTAKKAT--------------------GSRRHAQGA-CGGGX-AGGASSRYRLPRDGSYRGVCMGDVEAHVFRAVLAR 839
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 6.410e-6 Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 2
Query: 974 IITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREV 1102
+I FRE V+KL LG TEPEI+ F+SF+A+ GGIDF EV
Sbjct: 2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEV 44
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A078AAI2_STYLE (Ef hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAI2_STYLE) HSP 1 Score: 62.4 bits (150), Expect = 6.960e-6 Identity = 62/264 (23.48%), Postives = 117/264 (44.32%), Query Frame = 2
Query: 1283 EELLREKILGSIGGGAFE---LLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWVGGVDARGGCGSSLHLGNAGGSDEQGEDTSGDCRAGLKKSPAERAQERVTQAFHKQAGQMTPEELHVILRNKLLSTVKPGGATLQRTYRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIVYSETLKPEDPRQAVARGA------DGAGVGDADNL 2047
EE L++K+ E L+++F+ ++ F++A++ + +DE ++EVFF+ +D +G+G +D+KEF + V + A GS G+ G +++ R G P+ +R+K+ G LQR ++ + D + + +FK+AV + + I D ++ +F +D + G IDY FL++I T PR A+ + A DG+G D +++
Sbjct: 21 EESLKQKLSQKCQANQSEEQFLIKSFKFFDFSNSGEVDFPTFQRAIAKMGVVVDEEDLEVFFRAYDSNGNGKLDYKEFSDIV------------FNRAQASGS--------GNASQGRQQASTYR-------------GLRDPKPYIEAIRDKIKQRGARGIIGLQRVFKIM---DDNNSKSLDKQEFKKAVRDFKIDIPDEYIDIIFAAFDLNRDGTIDYDEFLRIIRGDLTA----PRLALVKKAYAKLDKDGSGSVDIEDI 244
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A7S1C5P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P4_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.550e-5 Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 2
Query: 1778 YRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIV 1960
YR +R G P G I + FK+ + G+ ITD+ + +LFRRYD +DSG+ID+ ++ ++
Sbjct: 1 YREAYRLFGAPNGEIDMELFKDRMRNLGLVITDDDLGKLFRRYDDNDSGHIDFHEMIRNVM 61
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A836C9J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J2_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.760e-5 Identity = 51/213 (23.94%), Postives = 93/213 (43.66%), Query Frame = 2
Query: 902 MKGIGDDTHEPPRAFRKIH---RGRGTIITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREVCNWLDGIEKEQEEQQGKTGSVFQPESESSDIAGSKRR----MLEAQAKAKAALERVLKRTMAESEELLREKILGSIGGGAFELLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWV 1519
++ + +E RAFR +GR ++ DF ++++LG+ ++ E ++FQ F+ + G IDF E +W+ TG + + + A +R ++ + + + +AE LR +I S+ G E+LRAFRR+ R + I D R A+ L + + F +D G + F+E E +
Sbjct: 698 LRRVSGGQYEVLRAFRNFKVGMKGRAALLNEQDFNTSIKQLGIKLSDAESKALFQKFDEDGSGMIDFAEFRSWVTASAT------ANTGLLVEGADHAKIAAAQERSARGCVIVSGGCSGXXXXXXXQSALAELHTRLRARIAASMKAGPHEMLRAFRRVTRKQTADIVAPDLRDALVSLRLSATDEQARQLFARYDRRARGAVSFQELIETI 904 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig85.10.1 >prot_A-nodosum_M_contig85.10.1 ID=prot_A-nodosum_M_contig85.10.1|Name=mRNA_A-nodosum_M_contig85.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1061bp MSQATVAATSRAGGLAASSSLTSCRGNFSKRHLGGNPNKPSLARLPSLNSback to top mRNA from alignment at A-nodosum_M_contig85:234483..309057+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig85.10.1 ID=mRNA_A-nodosum_M_contig85.10.1|Name=mRNA_A-nodosum_M_contig85.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=74575bp|location=Sequence derived from alignment at A-nodosum_M_contig85:234483..309057+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig85:234483..309057+ >mRNA_A-nodosum_M_contig85.10.1 ID=mRNA_A-nodosum_M_contig85.10.1|Name=mRNA_A-nodosum_M_contig85.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=3183bp|location=Sequence derived from alignment at A-nodosum_M_contig85:234483..309057+ (Ascophyllum nodosum dioecious)back to top |