prot_A-nodosum_M_contig85.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig85.10.1
Unique Nameprot_A-nodosum_M_contig85.10.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1061
Homology
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 2.570e-152
Identity = 365/891 (40.97%), Postives = 457/891 (51.29%), Query Frame = 0
Query:  147 FMRDLTACNGLQFRFSGREDEVTRHRRAVKRRIEQQERMVRRPSLGEFKTLLKTEIMKGIGDDTHEPPRAFRKIHRGRGTIITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREVCNWLDGIEKEQEE----------------------QQGKTGSVFQPESESSDIAGSKRRMLEAQAKAKAALERVLKRTMAESEELLREKILGSIGGGAFELLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWVGGVDARGGCGSSL------------HLGNAGGSDEQGEDTSGDCRAGLKKSPAERAQERVTQAFHKQAGQMTPEELHVILRNKLLSTVKPGGATLQRTYRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIVYSETLKPEDPRQAVARGADGAGVGDADNLFPGLADTAHGRSDALFRS---GAICTENSSETSAREGGEVEGDIESEGGIGGATDGGNYGGVLFGGESARDKEKPGRW--GGEDLAERASEGTLPLSKECRSTSLLSCSAVIGARAENKIRGCLHNRWRPMLAAFRRRDESFSGVITRAEFWQVLSENNATQVLADGDMEALAVKHALPGGRVDYQRFMKHLLLSGQDGKYRSRAASVHGIERVSGAPGANAGAGSQQGLANRPSSMTAVSLDKMKLGLAGSKSTGALGPCSSVRQPDFSRRCQNNGKMSPINIDIDFDAYNTGKSKEKWREESDDGRLRARAITLCRKLQPHVSHVWKPLWKDLKDADASATKSNAIIRRNKQYRGYSYNCNTVGCNAKRRASNGTWCGDSSNAGITTSASR----GISRSTATGEVETHVFSKVLAR 994
            FMR+L + NGLQ R S  EDE  RHRR V RRI+ QE  VRRPS+G+ K LLK +I+  IG    E  RAFRK+  G GT+I    FRE V+KL LG TEPEI+  F+SF+A+  GGIDF E C W++  +   +E                       +G+ G  F+P S  SD + SKR+M +AQAK KAA ERV +RTMAE+E+LLR+KILGSIGGG F+LLRAFR+MHRGRGT+++LNDFR+AV  F+LGL E EVE FFKGFD DGSGGIDF+EFC WVGG DA G     L             +    G     +DT+        K+PA RAQERVT+AF +QAG                                          G+ L DFKEAVHRYGMG+TD QVE+LFRRYD D SG ID+  FLKLI+Y+E L P++P +         G+G      P   D A  R     R    G I  EN++          +   E            N+G  L G E        G     G  +A +    + P+   C    L S     GA+AE K++ C+ +RWR ML+AFRR D   +G +T  EF QVL+ N A Q L  GD+ ALA KHA+  GRVDY RFM+HLLL   +G    R A   G+ R +   G   G        + P   +A S    + GL  S STGAL    ++  P  S R     ++ P+  D     + +G        E     LR RAI +CR+LQPH+  VWKPLWKD K AD S+T   A                       RR + G  CG    AG  +S  R    G  R    G+VE HVF  VLAR
Sbjct:   59 FMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQEDCVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKLSLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEATDDSADEPGXXXXXXXXXXXXXXXXXXXTSKGREGG-FRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVAGEGGWDDDTT--------KTPAMRAQERVTRAFREQAG------------------------------------------GVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEPLETPV------GLG-----TPPCPDAACDRPRGGVRPLTPGWISDENAATADGTSNDNTD-KRERNXXXXXXXXXXNFGN-LPGKEXXXXXRSAGEGCGAGPHVASKRQGRSRPV---CEQPVLGSSPVTNGAKAEEKMKACVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLG--NGPAGDRPAG--GVGRDNDEDGGGRG--------SSPRHRSATSAKATRPGLKVSMSTGALPAPGAISSP--SPRRDRLHQLRPL--DRQAARHGSGGGXXXXGNE-----LRDRAIAICRELQPHIVSVWKPLWKDFKAADESSTAKKAT--------------------GSRRHAQGA-CGGGX-AGGASSRYRLPRDGSYRGVCMGDVEAHVFRAVLAR 839          
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.940e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query:  227 IITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREV 269
            +I    FRE V+KL LG TEPEI+  F+SF+A+  GGIDF EV
Sbjct:    2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEV 44          
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A078AAI2_STYLE (Ef hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAI2_STYLE)

HSP 1 Score: 62.4 bits (150), Expect = 5.020e-6
Identity = 62/264 (23.48%), Postives = 117/264 (44.32%), Query Frame = 0
Query:  330 EELLREKILGSIGGGAFE---LLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWVGGVDARGGCGSSLHLGNAGGSDEQGEDTSGDCRAGLKKSPAERAQERVTQAFHKQAGQMTPEELHVILRNKLLSTVKPGGATLQRTYRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIVYSETLKPEDPRQAVARGA------DGAGVGDADNL 584
            EE L++K+         E   L+++F+         ++   F++A++   + +DE ++EVFF+ +D +G+G +D+KEF + V             +   A GS        G+   G +++   R             G   P+     +R+K+      G   LQR ++ +   D   +  +   +FK+AV  + + I D  ++ +F  +D +  G IDY  FL++I    T     PR A+ + A      DG+G  D +++
Sbjct:   21 EESLKQKLSQKCQANQSEEQFLIKSFKFFDFSNSGEVDFPTFQRAIAKMGVVVDEEDLEVFFRAYDSNGNGKLDYKEFSDIV------------FNRAQASGS--------GNASQGRQQASTYR-------------GLRDPKPYIEAIRDKIKQRGARGIIGLQRVFKIM---DDNNSKSLDKQEFKKAVRDFKIDIPDEYIDIIFAAFDLNRDGTIDYDEFLRIIRGDLTA----PRLALVKKAYAKLDKDGSGSVDIEDI 244          
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A7S1C5P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.180e-5
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 0
Query:  495 YRSLHRGDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNFLKLIV 555
            YR  +R  G P G I +  FK+ +   G+ ITD+ + +LFRRYD +DSG+ID+   ++ ++
Sbjct:    1 YREAYRLFGAPNGEIDMELFKDRMRNLGLVITDDDLGKLFRRYDDNDSGHIDFHEMIRNVM 61          
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Match: A0A836C9J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-5
Identity = 51/213 (23.94%), Postives = 93/213 (43.66%), Query Frame = 0
Query:  203 MKGIGDDTHEPPRAFRKIH---RGRGTIITLGDFREAVRKLGLGFTEPEIVSIFQSFEANKRGGIDFREVCNWLDGIEKEQEEQQGKTGSVFQPESESSDIAGSKRR----MLEAQAKAKAALERVLKRTMAESEELLREKILGSIGGGAFELLRAFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGIDFKEFCEWV 408
            ++ +    +E  RAFR      +GR  ++   DF  ++++LG+  ++ E  ++FQ F+ +  G IDF E  +W+             TG + +    +   A  +R     ++ +   +        +  +AE    LR +I  S+  G  E+LRAFRR+ R +   I   D R A+    L   + +    F  +D    G + F+E  E +
Sbjct:  698 LRRVSGGQYEVLRAFRNFKVGMKGRAALLNEQDFNTSIKQLGIKLSDAESKALFQKFDEDGSGMIDFAEFRSWVTASAT------ANTGLLVEGADHAKIAAAQERSARGCVIVSGGCSGXXXXXXXQSALAELHTRLRARIAASMKAGPHEMLRAFRRVTRKQTADIVAPDLRDALVSLRLSATDEQARQLFARYDRRARGAVSFQELIETI 904          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig85.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWU7_ECTSI2.570e-15240.97EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
A0A6H5KCV0_9PHAE4.940e-658.14EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A078AAI2_STYLE5.020e-623.48Ef hand family protein n=1 Tax=Stylonychia lemnae ... [more]
A0A7S1C5P4_9STRA1.180e-539.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A836C9J2_9STRA1.270e-523.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..335
NoneNo IPR availableGENE3D1.10.238.10coord: 296..412
e-value: 7.0E-11
score: 44.0
coord: 135..295
e-value: 4.6E-8
score: 34.8
NoneNo IPR availableGENE3D1.10.238.10coord: 496..783
e-value: 1.4E-13
score: 52.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..84
NoneNo IPR availablePANTHERPTHR20875EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATEDcoord: 223..407
coord: 665..772
coord: 472..563
IPR002048EF-hand domainSMARTSM00054efh_1coord: 529..557
e-value: 4.0
score: 12.9
coord: 383..411
e-value: 0.0031
score: 26.7
coord: 248..276
e-value: 8.4
score: 10.3
coord: 347..375
e-value: 48.0
score: 4.2
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 367..406
e-value: 2.4E-6
score: 27.2
coord: 506..553
e-value: 2.7E-5
score: 23.8
coord: 227..271
e-value: 2.6E-4
score: 20.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 244..279
score: 8.320626
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 379..414
score: 12.700205
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 525..560
score: 10.914899
IPR002048EF-hand domainCDDcd00051EFhcoord: 501..554
e-value: 2.3169E-8
score: 49.4685
IPR002048EF-hand domainCDDcd00051EFhcoord: 347..408
e-value: 1.11744E-10
score: 56.0169
IPR002048EF-hand domainCDDcd00051EFhcoord: 215..273
e-value: 1.06013E-6
score: 44.8461
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 502..773
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 215..408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig85contigA-nodosum_M_contig85:234778..308412 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig85.10.1mRNA_A-nodosum_M_contig85.10.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig85 234483..309057 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig85.10.1 ID=prot_A-nodosum_M_contig85.10.1|Name=mRNA_A-nodosum_M_contig85.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1061bp
MSQATVAATSRAGGLAASSSLTSCRGNFSKRHLGGNPNKPSLARLPSLNS
GSPRNDGGGSLGDEGSLLSPARNKHGARKMGAASSRKKLALIPDKKGFRL
SSTWAGDDADLSRNNDCNSGDCGDKKSNNVLHPAKDNLSDESDDDAFMRD
LTACNGLQFRFSGREDEVTRHRRAVKRRIEQQERMVRRPSLGEFKTLLKT
EIMKGIGDDTHEPPRAFRKIHRGRGTIITLGDFREAVRKLGLGFTEPEIV
SIFQSFEANKRGGIDFREVCNWLDGIEKEQEEQQGKTGSVFQPESESSDI
AGSKRRMLEAQAKAKAALERVLKRTMAESEELLREKILGSIGGGAFELLR
AFRRMHRGRGTLINLNDFRKAVSLFNLGLDENEVEVFFKGFDVDGSGGID
FKEFCEWVGGVDARGGCGSSLHLGNAGGSDEQGEDTSGDCRAGLKKSPAE
RAQERVTQAFHKQAGQMTPEELHVILRNKLLSTVKPGGATLQRTYRSLHR
GDGYPAGGISLSDFKEAVHRYGMGITDNQVERLFRRYDSDDSGYIDYRNF
LKLIVYSETLKPEDPRQAVARGADGAGVGDADNLFPGLADTAHGRSDALF
RSGAICTENSSETSAREGGEVEGDIESEGGIGGATDGGNYGGVLFGGESA
RDKEKPGRWGGEDLAERASEGTLPLSKECRSTSLLSCSAVIGARAENKIR
GCLHNRWRPMLAAFRRRDESFSGVITRAEFWQVLSENNATQVLADGDMEA
LAVKHALPGGRVDYQRFMKHLLLSGQDGKYRSRAASVHGIERVSGAPGAN
AGAGSQQGLANRPSSMTAVSLDKMKLGLAGSKSTGALGPCSSVRQPDFSR
RCQNNGKMSPINIDIDFDAYNTGKSKEKWREESDDGRLRARAITLCRKLQ
PHVSHVWKPLWKDLKDADASATKSNAIIRRNKQYRGYSYNCNTVGCNAKR
RASNGTWCGDSSNAGITTSASRGISRSTATGEVETHVFSKVLARHGLELN
SRDLQTLEHLPSVLVRGCWALGEPAARAGAAAESGQRDGGGAGRIPYGAF
LDCCLTKLAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair