mRNA_A-nodosum_M_contig8476.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8476.1.1
Unique NamemRNA_A-nodosum_M_contig8476.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: D7G783_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G783_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.120e-37
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEGTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA+YSI FYLP+AL +EG LF GWT +A IL+VLGSAGG+LVAL  K+ DA+LKTFATSGAI+VT V GH  L  PL+IPI +GAGCTVLSL+NY
Sbjct:   96 QLAMYSIVFYLPMALWDEGPLFQGWTVSAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNY 191
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A6H5JE24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE24_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.860e-37
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEGTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA+YSI FYLP+AL EEG LF GWT NA IL+VLGSAGG+LVAL  K+ DA+LKTFATSGAI+VT V GH  L  PL+IPI +GAGCTVLSL+NY
Sbjct:  261 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNY 356
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S0RKE7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKE7_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-19
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLE-EGTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA+YSI+ YLP+A +E +G L  GWTW    +A+L ++GG+LVAL   + +++ KT A  GA+V+TTV GHVL   PLN PI +G    +LS+  Y
Sbjct:  253 QLAVYSIAIYLPMAWVETDGHLLEGWTWLVWCIAMLHASGGILVALSVLYSNSVTKTVAVCGALVLTTVLGHVLFGAPLNGPILLGCAVVILSIFGY 349
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S3AS17_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AS17_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 3.310e-17
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEGTL-FHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +S + YLP+   +     F GWTW     A +G+ GG+LVAL  KH D+++KT AT+GAIV+TT+   V LD PL++PI  GA   V+S+ NY
Sbjct:  258 QLAFWSSAIYLPIMCYDNPEHPFTGWTWVTGGCAAVGALGGVLVALSIKHADSIMKTIATTGAIVLTTILNVVFLDGPLSLPIFSGALVVVVSVFNY 354
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S3S1P2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S1P2_9SPIT)

HSP 1 Score: 79.0 bits (193), Expect = 5.080e-16
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEGTL-FHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +SI  Y P+ L +     F GWT  A + A +G  GG+LVAL  K+ D+++KT AT+GAIV TT+     LD P  +PI  GA   ++S+ NY
Sbjct:  106 QLAFWSIIIYTPIMLYDNPRRPFQGWTAMAGVCAFVGGVGGVLVALSIKYADSIMKTIATTGAIVFTTILNAAFLDGPFTLPIMAGAVIVMVSVCNY 202
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S0EIZ6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EIZ6_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 8.420e-16
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEE-GTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +S+  YLP+ + +     F GW+    + A +G+ GG+LVAL  K  D+++KT AT+GAIV+TT    V LD P ++PIA GA   V+S+ NY
Sbjct:  265 QLAFWSMVIYLPIMIYDNPNNPFAGWSGTTAVCAAVGALGGVLVALSIKLADSIMKTIATTGAIVLTTALNAVFLDGPYSLPIASGALVVVVSVFNY 361
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A482SUX6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX6_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 2.470e-15
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLE----------EGTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QL +YS+  Y  + + E          +   +  W+   V++AVLG+AGGLLVA   K+ D++LKT A +GAIV++TV GH LL  PL++ I+IGA  T++++ NY
Sbjct:  223 QLGLYSLLMYGGIIMYESIFADDEAWDKRAAWSNWSVITVLVAVLGAAGGLLVAATLKYADSILKTLAAAGAIVLSTVLGHYLLTGPLDVVISIGAIVTIIAIANY 328
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: R1DFE3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DFE3_EMIHU)

HSP 1 Score: 78.6 bits (192), Expect = 4.590e-15
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEE-GTLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +SI  Y P+ L +  G  F GWT  A   A +G+AGG+LVAL  K+ D++LKT ATSGAIV+TT     LLD P  + I  GA   V ++ +Y
Sbjct:  264 QLAFWSILIYTPIMLHDRPGDPFGGWTPMAAACAAIGAAGGVLVALSIKYADSILKTIATSGAIVLTTALNAALLDGPWGLSIIAGAIVVVTAVFDY 360
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S3RKY8_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RKY8_EMIHU)

HSP 1 Score: 78.2 bits (191), Expect = 6.480e-15
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEGTL-FHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +SI  Y P+ + +     F GWT  A + A +G  GG+LVAL  K+ D+++KT AT+GAIV TT+     LD P  +PI  GA   ++S+ NY
Sbjct:  286 QLAFWSILIYTPIMIHDNPRQPFAGWTPMAAVCAAVGGTGGVLVALSIKYADSIMKTIATTGAIVFTTILNAAFLDGPFTLPIVAGAVVVMVSVCNY 382
[Close]
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Match: A0A7S4IBD2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IBD2_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 2.140e-14
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 QLAIYSISFYLPVALLEEG-TLFHGWTWNAVILAVLGSAGGLLVALITKHLDALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY 288
            QLA +S   Y P+   +     F GWTW       +G+ GG+LVAL  KH D+++KT AT+GAIV+TTV     ++ P  +PI  GA   V+S+ NY
Sbjct:  130 QLAFWSSIMYTPLMFYDNPENPFAGWTWVTAGCGFVGALGGVLVALSIKHADSIMKTIATTGAIVLTTVLNAAFMNGPCTLPIISGALVVVVSVFNY 226
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8476.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G783_ECTSI3.120e-3770.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE24_9PHAE6.860e-3772.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0RKE7_9CHLO1.430e-1948.45Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3AS17_9EUKA3.310e-1747.42Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3S1P2_9SPIT5.080e-1644.33Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0EIZ6_9EUKA8.420e-1644.33Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A482SUX6_9ARCH2.470e-1541.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
R1DFE3_EMIHU4.590e-1547.42Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3RKY8_EMIHU6.480e-1543.30Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S4IBD2_9EUKA2.140e-1442.27Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8476contigA-nodosum_M_contig8476:24282..24569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G783
PFAMsNuc_sug_transp
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K15272
KEGG TC2.A.7.12
Hectar predicted targeting categorysignal anchor
Exons1
Evalue5.11e-38
EggNOG OGsCOG0697@1|root,KOG2234@2759|Eukaryota
Descriptionpyrimidine nucleotide-sugar transmembrane transporter activity
Cds size288
COG categoryEG
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870221.4340706-CDS-A-nodosum_M_contig8476:24281..245691680870221.4340706-CDS-A-nodosum_M_contig8476:24281..24569Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8476 24282..24569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8476.1.1prot_A-nodosum_M_contig8476.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8476 24282..24569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8476.1.1

>prot_A-nodosum_M_contig8476.1.1 ID=prot_A-nodosum_M_contig8476.1.1|Name=mRNA_A-nodosum_M_contig8476.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
QLAIYSISFYLPVALLEEGTLFHGWTWNAVILAVLGSAGGLLVALITKHL
DALLKTFATSGAIVVTTVAGHVLLDDPLNIPIAIGAGCTVLSLMNY
back to top

mRNA from alignment at A-nodosum_M_contig8476:24282..24569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8476.1.1 ID=mRNA_A-nodosum_M_contig8476.1.1|Name=mRNA_A-nodosum_M_contig8476.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig8476:24282..24569- (Ascophyllum nodosum dioecious)
CAGCTGGCCATATACTCGATTTCGTTCTACCTCCCCGTAGCGCTGCTCGA
AGAAGGGACGCTGTTCCACGGCTGGACATGGAACGCGGTCATCCTCGCGG
TCCTGGGTAGCGCGGGGGGCCTGCTTGTGGCCCTGATCACGAAGCACCTA
GACGCGCTGCTTAAGACCTTCGCCACCTCCGGGGCGATCGTCGTCACCAC
GGTGGCCGGCCACGTGCTGCTCGACGACCCCCTCAACATCCCCATCGCGA
TAGGCGCCGGCTGCACCGTCCTCTCCCTGATGAACTAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8476:24282..24569-

>mRNA_A-nodosum_M_contig8476.1.1 ID=mRNA_A-nodosum_M_contig8476.1.1|Name=mRNA_A-nodosum_M_contig8476.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig8476:24282..24569- (Ascophyllum nodosum dioecious)
CAGCTGGCCATATACTCGATTTCGTTCTACCTCCCCGTAGCGCTGCTCGA
AGAAGGGACGCTGTTCCACGGCTGGACATGGAACGCGGTCATCCTCGCGG
TCCTGGGTAGCGCGGGGGGCCTGCTTGTGGCCCTGATCACGAAGCACCTA
GACGCGCTGCTTAAGACCTTCGCCACCTCCGGGGCGATCGTCGTCACCAC
GGTGGCCGGCCACGTGCTGCTCGACGACCCCCTCAACATCCCCATCGCGA
TAGGCGCCGGCTGCACCGTCCTCTCCCTGATGAACTAC
back to top