mRNA_A-nodosum_M_contig8443.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8443.1.1
Unique NamemRNA_A-nodosum_M_contig8443.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8443.1.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.190e-10
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    1 GSDLHDATEPLDVT----------QRPKLVIVAIDAESRMLKVSTEDNGALDRVINKILHCLHPQGTVAFALPRPWHLHTGRICGE 228
             + LHD T PLD T            PKLVIV+I AE R+LK S   N  L RVI+ +   +HP GT+A  +P PW  H  R+ G+
Sbjct:  386 NATLHD-TVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQGD 470
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BLAST of mRNA_A-nodosum_M_contig8443.1.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.110e-9
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 GSDLHDATEPLDVT----------QRPKLVIVAIDAESRMLKVSTEDNGALDRVINKILHCLHPQGTVAFALPRPWHLHTGRI 219
             + LHD   PLD T            PKLVIV+I AE R+L+ S   N  L RVI+ +   +HP GT+A  +P PW  H  R+
Sbjct:  328 NTTLHDIV-PLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 409
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE1.190e-1043.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE7.110e-940.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8443contigA-nodosum_M_contig8443:2524..2757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size236
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870214.822025-CDS-A-nodosum_M_contig8443:2523..27571680870214.822025-CDS-A-nodosum_M_contig8443:2523..2757Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8443 2524..2757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8443.1.1prot_A-nodosum_M_contig8443.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8443 2524..2757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8443.1.1

>prot_A-nodosum_M_contig8443.1.1 ID=prot_A-nodosum_M_contig8443.1.1|Name=mRNA_A-nodosum_M_contig8443.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
GSDLHDATEPLDVTQRPKLVIVAIDAESRMLKVSTEDNGALDRVINKILH
CLHPQGTVAFALPRPWHLHTGRICGEV*
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mRNA from alignment at A-nodosum_M_contig8443:2524..2757-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8443.1.1 ID=mRNA_A-nodosum_M_contig8443.1.1|Name=mRNA_A-nodosum_M_contig8443.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig8443:2524..2757- (Ascophyllum nodosum dioecious)
GGGTCTGACCTTCACGACGCTACAGAGCCTCTTGACGTCACTCAAAGGCC
GAAGCTCGTCATCGTCGCGATCGACGCTGAAAGCCGTATGTTGAAGGTTT
CAACCGAGGACAACGGCGCACTTGATCGAGTGATCAACAAGATACTCCAT
TGCTTACATCCTCAAGGAACAGTCGCATTTGCGTTGCCTCGCCCGTGGCA
TCTCCACACTGGGAGAATTTGCGGTGAGGTGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8443:2524..2757-

>mRNA_A-nodosum_M_contig8443.1.1 ID=mRNA_A-nodosum_M_contig8443.1.1|Name=mRNA_A-nodosum_M_contig8443.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig8443:2524..2757- (Ascophyllum nodosum dioecious)
GGGTCTGACCTTCACGACGCTACAGAGCCTCTTGACGTCACTCAAAGGCC
GAAGCTCGTCATCGTCGCGATCGACGCTGAAAGCCGTATGTTGAAGGTTT
CAACCGAGGACAACGGCGCACTTGATCGAGTGATCAACAAGATACTCCAT
TGCTTACATCCTCAAGGAACAGTCGCATTTGCGTTGCCTCGCCCGTGGCA
TCTCCACACTGGGAGAATTTGCGGTGAGGTGTAA
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