mRNA_A-nodosum_M_contig842.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig842.17.1
Unique NamemRNA_A-nodosum_M_contig842.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig842.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig842contigA-nodosum_M_contig842:206799..209024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1302
Hectar predicted targeting categoryother localisation
Exons2
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870205.2231987-UTR-A-nodosum_M_contig842:206798..2070001680870205.2231987-UTR-A-nodosum_M_contig842:206798..207000Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig842 206799..207000 -
1680870205.2643962-UTR-A-nodosum_M_contig842:208986..2090241680870205.2643962-UTR-A-nodosum_M_contig842:208986..209024Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig842 208987..209024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870205.234329-CDS-A-nodosum_M_contig842:207000..2077891680870205.234329-CDS-A-nodosum_M_contig842:207000..207789Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 207001..207789 -
1680870205.2455227-CDS-A-nodosum_M_contig842:208713..2089861680870205.2455227-CDS-A-nodosum_M_contig842:208713..208986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 208714..208986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig842.17.1prot_A-nodosum_M_contig842.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig842 207001..208986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig842.17.1

>prot_A-nodosum_M_contig842.17.1 ID=prot_A-nodosum_M_contig842.17.1|Name=mRNA_A-nodosum_M_contig842.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=354bp
MPKMSRAQKQEPKSCRGTRQRRRRKPVANDLGVSGEPDNLLSSTSASSTD
DSYLAAQGDGQCSAIYGYNPPYMDIRTVKNNLTVDQAAKLEGQSHCLLLV
EPVILPDLGHTGVRREMLPDDHPIFYMDGHKSCGLSATVHKALYESTCNR
KQKELGDRDQQLPLEQSDSSVCTTPFDYPSRMGSEDEVGAITKGHQGGKF
PSDVSEETRPGVRDTRKHRSGMISTNKTSSSTLGHVECEEGGGQRSLSEN
TAARLQRSGTLLIKSQQQQQQPVTHSEGDTSTLAFGAETSRARTTSHKKS
SAPGWRKQGELRGGGRDSEWSKERRAADQEAREVLSAVRQNSLMMSFLVG
GGI*
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mRNA from alignment at A-nodosum_M_contig842:206799..209024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig842.17.1 ID=mRNA_A-nodosum_M_contig842.17.1|Name=mRNA_A-nodosum_M_contig842.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2226bp|location=Sequence derived from alignment at A-nodosum_M_contig842:206799..209024- (Ascophyllum nodosum dioecious)
GTTCCCATCCCGGACAGAGTCTTCGGGTTAGCTGGGTGATGCCAAAAATG
TCCAGAGCGCAAAAGCAGGAACCGAAGTCTTGTCGAGGAACAAGACAAAG
GAGGAGAAGGAAACCGGTGGCAAACGACCTCGGTGTTTCTGGGGAGCCAG
ACAATTTGCTTTCTTCGACTTCGGCTAGTTCCACCGACGACTCTTACTTG
GCCGCTCAGGGTGACGGACAATGTTCCGCGATCTACGGGTACAACCCCCC
CTACATGGACATACGGACGGTCAAGAACAACCTGACCGTCGATCAGGCGG
CCAAACTCGAGGTGGGGTACACATGAGCACGCCACCTCCCCGCCTCAATA
ATTATTGCTGATTATATACTACATTTATGTATAAGTATTCAGATCGTGTG
TCATCATTGCCCACGCTGAAGATGTTACATTAAGTTGTTGTGTAGGGCTA
TACGTACGAGCGCTTGTGTTCGTGCGAGTAACAGGATCTCGGAGATTCAT
ACATGCAGATTGATGCTTACGAATAGAACTAGCATTAGTTTGTTTGCATA
CAAGCATTGGCTTTCCATTTTTGAGGCGATCACCCCTAGGCTTCTCAGTC
ACACGACTCGGTACCTTAGGAGTAATTGCCTTGAATACGGATAACCTTTC
TTAAGCTACCGAGTCACGTGACAAAGTTGCTAAGGGGTGATCACCTTGAA
AAGGGACAAAACAGTCGCGAGTTCAAACCTCGCCGCGAATACTATTTGTC
AAGGGAGCTGCCTAAGTACCAGACCGTGGCGAGGGTAAAGCCCCAAAGAG
TAGTGTCCGCGGCGGGTTTGTTCTAGCCCACAAAACACACTTGTTATCCG
TTTTCAAGGCGATCACCCCTAGGCACTCAGTCACGCAACTCGATAGCTTA
GGGGTGATCGCCTTGAAAACGGATATTGACATCTTGGGTATCGATGATGA
TGTGGCTGGCGTAACTGGGATCACGTCTATCAAAGCATCGACTTACCATG
GGCAAAGACGCGCCTAAGTTTTCCTTCGTACTAAGTAAGAAGCTTAGCCT
TAGCTCATGCTGCAAGAAAAATGTGTAATCTAAGCTAGATCGTTCGTGTT
TATGAACGGCCGAACAAGTGCCAATCCTCAGTGTTCACAGGGTCAGTTCG
AATCATGCTAAAAGGGATCCCAACAACCTGTTCAGCAAGCCGTTGATTTC
CCGCCTTCCTCCTTTCCACAATCCATAATGCCCAGGGGCAGTCACACTGT
CTTCTCCTCGTGGAGCCCGTCATACTCCCCGACCTTGGCCACACAGGCGT
GCGGAGGGAAATGTTGCCGGACGATCACCCTATATTCTACATGGATGGAC
ACAAAAGTTGTGGCCTAAGTGCCACGGTTCATAAGGCTCTCTATGAGTCC
ACCTGCAACCGTAAACAGAAGGAGCTGGGTGATCGGGATCAACAGCTCCC
ATTGGAGCAGAGTGACAGTAGCGTGTGTACTACCCCGTTCGATTATCCTT
CTAGGATGGGTTCTGAAGACGAAGTCGGAGCGATCACAAAGGGGCATCAA
GGCGGTAAATTCCCAAGCGATGTCTCGGAAGAAACTCGACCGGGGGTGCG
CGATACAAGGAAGCACAGATCAGGGATGATCTCGACAAACAAGACAAGCT
CATCTACGCTGGGGCATGTCGAGTGTGAAGAAGGTGGCGGGCAGAGAAGC
TTATCCGAAAATACCGCGGCGAGGCTACAGCGGAGCGGGACCCTTCTCAT
CAAGTCTCAGCAGCAACAGCAACAGCCCGTAACGCATAGCGAGGGTGACA
CCAGCACGCTGGCCTTCGGGGCAGAGACTTCAAGGGCAAGGACCACCAGC
CACAAGAAGTCCTCGGCCCCCGGTTGGAGGAAACAAGGCGAGCTCCGCGG
GGGCGGACGGGATTCCGAGTGGTCAAAGGAGCGACGAGCTGCAGACCAGG
AAGCGCGGGAGGTTTTGAGCGCCGTGCGGCAAAACAGCTTGATGATGTCA
TTCTTGGTAGGAGGTGGTATTTGACACACCCGCTACCCCTTACCGAGGAA
TCCTTACAACATTTGCTTGGGGCTTCTTATCGCGACGTAGTTAGCATATC
ATGTCCAGACTCCTTGAGACCTCCAATTATGAAGAAGGGGGACAAGTTAC
CTCCCAAGCGCTTGATTCAGTCGAGTTCTGGAGCTATACACATATAACCT
CGATTCAGCTCCGGCAGAGTCCAGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig842:206799..209024-

>mRNA_A-nodosum_M_contig842.17.1 ID=mRNA_A-nodosum_M_contig842.17.1|Name=mRNA_A-nodosum_M_contig842.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at A-nodosum_M_contig842:206799..209024- (Ascophyllum nodosum dioecious)
ATGCCAAAAATGTCCAGAGCGCAAAAGCAGGAACCGAAGTCTTGTCGAGG
AACAAGACAAAGGAGGAGAAGGAAACCGGTGGCAAACGACCTCGGTGTTT
CTGGGGAGCCAGACAATTTGCTTTCTTCGACTTCGGCTAGTTCCACCGAC
GACTCTTACTTGGCCGCTCAGGGTGACGGACAATGTTCCGCGATCTACGG
GTACAACCCCCCCTACATGGACATACGGACGGTCAAGAACAACCTGACCG
TCGATCAGGCGGCCAAACTCGAGGGGCAGTCACACTGTCTTCTCCTCGTG
GAGCCCGTCATACTCCCCGACCTTGGCCACACAGGCGTGCGGAGGGAAAT
GTTGCCGGACGATCACCCTATATTCTACATGGATGGACACAAAAGTTGTG
GCCTAAGTGCCACGGTTCATAAGGCTCTCTATGAGTCCACCTGCAACCGT
AAACAGAAGGAGCTGGGTGATCGGGATCAACAGCTCCCATTGGAGCAGAG
TGACAGTAGCGTGTGTACTACCCCGTTCGATTATCCTTCTAGGATGGGTT
CTGAAGACGAAGTCGGAGCGATCACAAAGGGGCATCAAGGCGGTAAATTC
CCAAGCGATGTCTCGGAAGAAACTCGACCGGGGGTGCGCGATACAAGGAA
GCACAGATCAGGGATGATCTCGACAAACAAGACAAGCTCATCTACGCTGG
GGCATGTCGAGTGTGAAGAAGGTGGCGGGCAGAGAAGCTTATCCGAAAAT
ACCGCGGCGAGGCTACAGCGGAGCGGGACCCTTCTCATCAAGTCTCAGCA
GCAACAGCAACAGCCCGTAACGCATAGCGAGGGTGACACCAGCACGCTGG
CCTTCGGGGCAGAGACTTCAAGGGCAAGGACCACCAGCCACAAGAAGTCC
TCGGCCCCCGGTTGGAGGAAACAAGGCGAGCTCCGCGGGGGCGGACGGGA
TTCCGAGTGGTCAAAGGAGCGACGAGCTGCAGACCAGGAAGCGCGGGAGG
TTTTGAGCGCCGTGCGGCAAAACAGCTTGATGATGTCATTCTTGGTAGGA
GGTGGTATTTGA
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