mRNA_A-nodosum_M_contig829.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig829.6.1
Unique NamemRNA_A-nodosum_M_contig829.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.930e-25
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:   28 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.010e-24
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:   26 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-24
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:   92 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:  199 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.180e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:   26 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.120e-23
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEE 195
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EE
Sbjct:   26 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.310e-23
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D+IV  M FDRIG LG S  ++ R  EEVRL
Sbjct:   23 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.600e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:  373 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.240e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:   90 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157
[Close]
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.410e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIGRLGQSPALQARRVEEVRL 204
            MHKSQGQTLAKAVIDLG +EA TGLTFVCLSRAKR+ D++V  M FDRIG LG SP ++AR  EEVRL
Sbjct:  369 MHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 436
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig829.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE1.930e-2575.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.010e-2475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.030e-2475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE1.000e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.180e-2375.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFN2_9PHAE3.120e-2373.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE4.310e-2373.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE6.600e-2375.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE7.240e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE9.410e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig829contigA-nodosum_M_contig829:275388..275591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.84e-09
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size204
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870168.124386-CDS-A-nodosum_M_contig829:275387..2755911680870168.124386-CDS-A-nodosum_M_contig829:275387..275591Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig829 275388..275591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig829.6.1prot_A-nodosum_M_contig829.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig829 275388..275591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig829.6.1

>prot_A-nodosum_M_contig829.6.1 ID=prot_A-nodosum_M_contig829.6.1|Name=mRNA_A-nodosum_M_contig829.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
MHKSQGQTLAKAVIDLGKREAYTGLTFVCLSRAKRIDDVIVTAMPFDRIG
RLGQSPALQARRVEEVRL
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mRNA from alignment at A-nodosum_M_contig829:275388..275591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig829.6.1 ID=mRNA_A-nodosum_M_contig829.6.1|Name=mRNA_A-nodosum_M_contig829.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig829:275388..275591- (Ascophyllum nodosum dioecious)
ATGCACAAATCGCAGGGGCAGACACTAGCCAAAGCAGTTATTGATCTGGG
CAAAAGAGAGGCGTACACCGGCCTCACCTTCGTTTGTCTTAGCCGGGCCA
AGCGAATCGACGACGTGATCGTCACGGCCATGCCTTTCGATAGAATAGGT
AGACTGGGGCAATCGCCCGCGCTCCAAGCGAGGCGCGTAGAAGAGGTTAG
ACTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig829:275388..275591-

>mRNA_A-nodosum_M_contig829.6.1 ID=mRNA_A-nodosum_M_contig829.6.1|Name=mRNA_A-nodosum_M_contig829.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig829:275388..275591- (Ascophyllum nodosum dioecious)
ATGCACAAATCGCAGGGGCAGACACTAGCCAAAGCAGTTATTGATCTGGG
CAAAAGAGAGGCGTACACCGGCCTCACCTTCGTTTGTCTTAGCCGGGCCA
AGCGAATCGACGACGTGATCGTCACGGCCATGCCTTTCGATAGAATAGGT
AGACTGGGGCAATCGCCCGCGCTCCAAGCGAGGCGCGTAGAAGAGGTTAG
ACTC
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