prot_A-nodosum_M_contig8261.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig8261.3.1
Unique Name	prot_A-nodosum_M_contig8261.3.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	86

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A1Z1MV82_9FLOR (Photosystem II CP47 chlorophyll apoprotein n=1 Tax=Polysiphonia teges TaxID=2007110 RepID=A0A1Z1MV82_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 4.990e-50
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV+V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:   30 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVSVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 115

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A8CCR8_9STRA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=A8CCR8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.450e-49
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+K+ARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  240 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKYARKAQLGEVFEFDRTSLESDGVFR 325

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A6G6D7A3_ECTSI (Photosystem II CP47 reaction center protein n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7A3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.670e-48
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVILIDKDGIIRADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  360 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 445

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7U0QGP2_OLILU (Photosystem II CP47 reaction center protein n=13 Tax=Ochrophyta TaxID=2696291 RepID=A0A7U0QGP2_OLILU)

HSP 1 Score: 166 bits (421), Expect = 1.710e-47
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV VSFYGGKLNGQSFKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  358 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQSFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 443

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.780e-47
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV VSFYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: K9ZW94_9STRA (Photosystem II CP47 reaction center protein n=19 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZW94_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.310e-46
Identity = 79/86 (91.86%), Postives = 85/86 (98.84%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPV+L+DKDGIIRADIPFRRAESKYSI QVGVNV+FYGGKLNGQ+FKDAPTV+K+ARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVLLLDKDGIIRADIPFRRAESKYSIEQVGVNVNFYGGKLNGQTFKDAPTVKKYARKAQLGEVFEFDRTSLESDGVFR 444

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=85 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV)

HSP 1 Score: 164 bits (414), Expect = 1.840e-46
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A2U9NM32_9STRA (Photosystem II CP47 reaction center protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A2U9NM32_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.840e-46
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7S2V2W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.840e-46
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+D DG++RADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+K+ARKAQLGEVFEFD+TSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDSDGVVRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKYARKAQLGEVFEFDKTSLESDGVFR 444

[Close]

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7S1TCG8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCG8_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 4.750e-46
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 86
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV+V+FYGGKLNGQSF DAPTV+K+ARK+QLGEVFEFDRT+LESDGVFR
Sbjct:  246 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVSVNFYGGKLNGQSFNDAPTVKKYARKSQLGEVFEFDRTTLESDGVFR 331

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Z1MV82_9FLOR	4.990e-50	93.02	Photosystem II CP47 chlorophyll apoprotein n=1 Tax...	[more]
A8CCR8_9STRA	1.450e-49	95.35	Photosystem II P680 chlorophyll A apoprotein (Frag...	[more]
A0A6G6D7A3_ECTSI	1.670e-48	97.67	Photosystem II CP47 reaction center protein n=55 T...	[more]
A0A7U0QGP2_OLILU	1.710e-47	95.35	Photosystem II CP47 reaction center protein n=13 T...	[more]
A0A3G2QYB8_9STRA	4.780e-47	94.19	Photosystem II CP47 reaction center protein n=14 T...	[more]
K9ZW94_9STRA	1.310e-46	91.86	Photosystem II CP47 reaction center protein n=19 T...	[more]
PSBB_TRICV	1.840e-46	93.02	Photosystem II CP47 reaction center protein n=85 T...	[more]
A0A2U9NM32_9STRA	1.840e-46	93.02	Photosystem II CP47 reaction center protein n=2 Ta...	[more]
A0A7S2V2W1_9STRA	1.840e-46	90.70	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S1TCG8_9RHOD	4.750e-46	89.53	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..86 e-value: 1.3E-34 score: 119.8
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..86
None	No IPR available	GENE3D	3.10.680.10	Photosystem II CP47 reaction center protein	coord: 1..86 e-value: 1.9E-44 score: 153.4
None	No IPR available	PANTHER	PTHR33180:SF17	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 1..86
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..86

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig8261	contig	A-nodosum_M_contig8261:13526..13783 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig8261.3.1	mRNA_A-nodosum_M_contig8261.3.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig8261 13526..14001 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig8261.3.1 ID=prot_A-nodosum_M_contig8261.3.1|Name=mRNA_A-nodosum_M_contig8261.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNG
QSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000932	PS_antenna-like
IPR036001	PS_II_antenna-like_sf