mRNA_A-nodosum_M_contig8261.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8261.3.1
Unique NamemRNA_A-nodosum_M_contig8261.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A1Z1MV82_9FLOR (Photosystem II CP47 chlorophyll apoprotein n=1 Tax=Polysiphonia teges TaxID=2007110 RepID=A0A1Z1MV82_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 8.670e-49
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV+V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:   30 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVSVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 115
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A8CCR8_9STRA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=A8CCR8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.540e-48
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+K+ARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  240 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKYARKAQLGEVFEFDRTSLESDGVFR 325
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A6G6D7A3_ECTSI (Photosystem II CP47 reaction center protein n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7A3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.940e-47
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVILIDKDGIIRADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  360 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 445
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7U0QGP2_OLILU (Photosystem II CP47 reaction center protein n=13 Tax=Ochrophyta TaxID=2696291 RepID=A0A7U0QGP2_OLILU)

HSP 1 Score: 166 bits (421), Expect = 3.000e-46
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV VSFYGGKLNGQSFKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  358 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQSFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 443
[Close]
BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.350e-46
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV VSFYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: K9ZW94_9STRA (Photosystem II CP47 reaction center protein n=19 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZW94_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.290e-45
Identity = 79/86 (91.86%), Postives = 85/86 (98.84%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPV+L+DKDGIIRADIPFRRAESKYSI QVGVNV+FYGGKLNGQ+FKDAPTV+K+ARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVLLLDKDGIIRADIPFRRAESKYSIEQVGVNVNFYGGKLNGQTFKDAPTVKKYARKAQLGEVFEFDRTSLESDGVFR 444
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=85 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV)

HSP 1 Score: 164 bits (414), Expect = 3.200e-45
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444
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BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A2U9NM32_9STRA (Photosystem II CP47 reaction center protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A2U9NM32_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.200e-45
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV V FYGGKLNGQ+FKDAPTV+KFARKAQLGEVFEFDRTSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFR 444
[Close]
BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7S2V2W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.200e-45
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+D DG++RADIPFRRAESKYSI QVGVNVSFYGGKLNGQSFKDAPTV+K+ARKAQLGEVFEFD+TSLESDGVFR
Sbjct:  359 MPAFFETFPVILVDSDGVVRADIPFRRAESKYSIEQVGVNVSFYGGKLNGQSFKDAPTVKKYARKAQLGEVFEFDKTSLESDGVFR 444
[Close]
BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Match: A0A7S1TCG8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCG8_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 8.200e-45
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  219 MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNGQSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR 476
            MPAFFETFPVIL+DKDGIIRADIPFRRAESKYSI QVGV+V+FYGGKLNGQSF DAPTV+K+ARK+QLGEVFEFDRT+LESDGVFR
Sbjct:  246 MPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVSVNFYGGKLNGQSFNDAPTVKKYARKSQLGEVFEFDRTTLESDGVFR 331
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8261.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z1MV82_9FLOR8.670e-4993.02Photosystem II CP47 chlorophyll apoprotein n=1 Tax... [more]
A8CCR8_9STRA2.540e-4895.35Photosystem II P680 chlorophyll A apoprotein (Frag... [more]
A0A6G6D7A3_ECTSI2.940e-4797.67Photosystem II CP47 reaction center protein n=55 T... [more]
A0A7U0QGP2_OLILU3.000e-4695.35Photosystem II CP47 reaction center protein n=13 T... [more]
A0A3G2QYB8_9STRA8.350e-4694.19Photosystem II CP47 reaction center protein n=14 T... [more]
K9ZW94_9STRA2.290e-4591.86Photosystem II CP47 reaction center protein n=19 T... [more]
PSBB_TRICV3.200e-4593.02Photosystem II CP47 reaction center protein n=85 T... [more]
A0A2U9NM32_9STRA3.200e-4593.02Photosystem II CP47 reaction center protein n=2 Ta... [more]
A0A7S2V2W1_9STRA3.200e-4590.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TCG8_9RHOD8.200e-4589.53Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8261contigA-nodosum_M_contig8261:13526..14001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D1J718
Preferred namepsbB
PFAMsPSII
Model size476
Max annot lvl2759|Eukaryota
KEGG koko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010207,GO:0010287,GO:0015979,GO:0016020,GO:0016043,GO:0019684,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
Exons1
Evalue2.74e-49
EggNOG OGs28JG1@1|root,2QRV6@2759|Eukaryota
Descriptionphotosynthetic electron transport in photosystem II
Cds size258
COG categoryS
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.7010624-CDS-A-nodosum_M_contig8261:13525..137831680870161.7010624-CDS-A-nodosum_M_contig8261:13525..13783Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8261 13526..13783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.719576-UTR-A-nodosum_M_contig8261:13783..140011680870161.719576-UTR-A-nodosum_M_contig8261:13783..14001Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8261 13784..14001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8261.3.1prot_A-nodosum_M_contig8261.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8261 13526..13783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8261.3.1

>prot_A-nodosum_M_contig8261.3.1 ID=prot_A-nodosum_M_contig8261.3.1|Name=mRNA_A-nodosum_M_contig8261.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MPAFFETFPVILIDKDGIIRADIPFRRAESKYSIGQVGVNVSFYGGKLNG
QSFKDAPTVEKFARKAQLGEVFEFDRTSLESDGVFR
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mRNA from alignment at A-nodosum_M_contig8261:13526..14001-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8261.3.1 ID=mRNA_A-nodosum_M_contig8261.3.1|Name=mRNA_A-nodosum_M_contig8261.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=476bp|location=Sequence derived from alignment at A-nodosum_M_contig8261:13526..14001- (Ascophyllum nodosum dioecious)
GTTGAAATATCTCTAAATGACGACTTATCAAAAACTGAAGCATGGTCAAG
TCTTCCAGATAAATTAGCATTTTATGATTATATCGGTAATAACCCAGCAA
AAGGTGGTTTATTTAGATCAGGTCCTACTATGAATAAAGGTGATGGAATT
GCTGAAGCTTGGTTAGGTCATCCAATCTTTAGAGATCGTGAGGGTCGAGA
ATTAACTGTACGTCGTATATGCCTGCTTTCTTTGAAACATTCCCTGTTAT
CTTAATTGATAAAGACGGTATTATTCGTGCAGATATACCATTTAGACGTG
CAGAATCAAAATATAGTATTGGACAAGTTGGTGTAAATGTTAGTTTTTAT
GGTGGTAAACTAAACGGTCAATCATTCAAAGATGCACCGACTGTGGAAAA
ATTTGCTCGTAAAGCTCAACTTGGTGAAGTTTTCGAGTTTGATAGAACAA
GTTTAGAATCTGATGGTGTATTTAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8261:13526..14001-

>mRNA_A-nodosum_M_contig8261.3.1 ID=mRNA_A-nodosum_M_contig8261.3.1|Name=mRNA_A-nodosum_M_contig8261.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig8261:13526..14001- (Ascophyllum nodosum dioecious)
ATGCCTGCTTTCTTTGAAACATTCCCTGTTATCTTAATTGATAAAGACGG
TATTATTCGTGCAGATATACCATTTAGACGTGCAGAATCAAAATATAGTA
TTGGACAAGTTGGTGTAAATGTTAGTTTTTATGGTGGTAAACTAAACGGT
CAATCATTCAAAGATGCACCGACTGTGGAAAAATTTGCTCGTAAAGCTCA
ACTTGGTGAAGTTTTCGAGTTTGATAGAACAAGTTTAGAATCTGATGGTG
TATTTAGG
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