mRNA_A-nodosum_M_contig8234.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8234.1.1
Unique NamemRNA_A-nodosum_M_contig8234.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A6H5JLI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI1_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.630e-50
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPLA 342
            LKYRGLGDITVFLLFGPMLMQVA+++ICG  Q W+LP+GVPAALLCEAILHANNMRDIEQDRSAGI+TLAT IGFR+SQ  Y S++ +AY  AG LA   +RGSAL+FLTLPLA
Sbjct:  231 LKYRGLGDITVFLLFGPMLMQVAAMLICGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLATAIGFRSSQVLYFSLLGMAYVVAGCLASTGNRGSALSFLTLPLA 344
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: D7FHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.500e-47
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPLA 342
            LKYRGLGDITVFLLFGPMLMQVA++++CG  Q W+LP+GVPAALLCEAILHANNMRDIEQDRSAGI+TLA  IGFR+SQ  Y  ++ +AY  AG LA    RGSAL+FLTLPLA
Sbjct:  142 LKYRGLGDITVFLLFGPMLMQVAAMLVCGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLA--IGFRSSQVLYFGLLGMAYVVAGCLAATGSRGSALSFLTLPLA 253
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A836CHJ2_9STRA (UbiA prenyltransferase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.280e-23
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPLA 342
            LKYR +GD  +F+ FGP+ M  A++++ G  Q W+LPY +P  LL EAILHANN RDI++D   GI T+A  +G++ S+  Y +MV  AY  A  L++ ++ G  L  L++PLA
Sbjct:  137 LKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSM-QYVGCCLVLLSVPLA 249
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7S4DAV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV0_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 1.060e-22
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPL 339
            LKY  LGD+ +FL FGP+LM   S+++ G+ +  +LPY +P  LL EAILHANNMRDI+ D  AGI TLA+ +GF  ++  Y  MV  A+  A  +A+    G AL    LPL
Sbjct:  140 LKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAFLVALAMAVTHSLGCALVLPALPL 252
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7S2UT65_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT65_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.190e-22
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPLA 342
            LKY  LGD+ +FL FGP+LMQ  +L++ G  Q  ++ Y +P  LL EAILHANN RDI+ D  AG  TLAT +G++ S      M++ AY  A  +      G+ + FL+LP+A
Sbjct:  142 LKYHCLGDLAIFLAFGPLLMQFTALLLTGSVQWQLMSYTLPVGLLTEAILHANNTRDIKTDSKAGANTLATVMGYQVSVVLLAVMIIGAYVAAAWITWAESCGAGITFLSLPVA 255
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7S3Y1J0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1J0_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 5.600e-21
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAY 270
            LKY  LGD+ +FL FGP+LM   S+++ G+ +  +LPY +P  LL EAILHANNMRDI+ D  AGI TLA+ +GF  ++  Y  MV  A+
Sbjct:  140 LKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAF 229
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7S0SXL2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXL2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-19
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPLA 342
            LKY+ LGD+T+FL FGP+LMQ  S+++ G     +  Y +P  LL E ILH NN RDI+ D  +G  TLAT +G   S   + ++++ +Y    ++ L+ H G   A  T+PLA
Sbjct:  137 LKYKALGDVTIFLCFGPLLMQCTSILLVGSTTDDLYLYSIPVGLLTEEILHVNNARDIKADSLSGAITLATIVGPDISYLIFLALLIGSYLSIIIIGLIYHWGCLAALFTIPLA 250
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A482SRC3_9ARCH (Prenyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRC3_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 1.560e-17
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHRGSALAFLTLPL 339
            LKY  LGDIT+FL FGP+LMQV+++++  +    +  Y +P  LL E+ILHANN RDI+ D + G  TLA+ +G   S   +  +++ AY     +A   H G  L+ LTLPL
Sbjct:  136 LKYIALGDITIFLCFGPLLMQVSAIIMTQKMSYEMYIYTIPIGLLTESILHANNARDIKNDTANGAITLASIMGLTMSYNFFIFLIVGAYLSVLGIAAYFHYGCLLSLLTLPL 248
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7S1DL28_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DL28_HEMAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.680e-16
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:    1 LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGW------ILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLRHR-GSALAFLTLPLA 342
            LKY  LGD+ +FL FGP+L +  +L+I   A         +L   VP  L+CE ILHANN RDI +D   G+ TLAT +GF  ++  + +M++ AYA     A  R   G    FL+LPLA
Sbjct:  119 LKYYALGDLAIFLAFGPLLTRCTTLLISSGAAAREDVTTDVLLLTVPVQLICECILHANNGRDIGEDSKNGLRTLATLLGFDKARTLFLAMMVGAYACVSAFAYRRRSPGMLCVFLSLPLA 239
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BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Match: A0A7V8DF33_9BACT (1 4-dihydroxy-2-naphthoate octaprenyltransferase n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7V8DF33_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 5.200e-16
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    4 KYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAILHANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVL 261
            KYR LG+I +FL FGP++    +L+  G    W     VP  LL  AILHANNMRD   DR+AGI+TLA   G  A+ A YR++VL
Sbjct:  160 KYRALGEIGIFLAFGPLITGGTALIQSGRLDAWPFLLSVPVGLLIVAILHANNMRDAAGDRAAGISTLAMKAGPAAALAVYRALVL 245
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLI1_9PHAE3.630e-5077.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN3_ECTSI1.500e-4774.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHJ2_9STRA4.280e-2345.61UbiA prenyltransferase family n=1 Tax=Tribonema mi... [more]
A0A7S4DAV0_HETAK1.060e-2247.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UT65_9STRA5.190e-2244.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y1J0_HETAK5.600e-2151.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0SXL2_9STRA2.150e-1941.23Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A482SRC3_9ARCH1.560e-1743.36Prenyltransferase n=1 Tax=archaeon TaxID=1906665 R... [more]
A0A7S1DL28_HEMAN2.680e-1642.15Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7V8DF33_9BACT5.200e-1650.001 4-dihydroxy-2-naphthoate octaprenyltransferase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8234contigA-nodosum_M_contig8234:5864..7122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHN3
Preferred nameUBIAD1
PFAMsUbiA
Model size342
Max annot lvl2759|Eukaryota
KEGG koko:K20824
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0001885,GO:0001932,GO:0001933,GO:0002064,GO:0002164,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003158,GO:0003674,GO:0003824,GO:0004497,GO:0004517,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0005794,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006766,GO:0006775,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0008592,GO:0009058,GO:0009108,GO:0009110,GO:0009233,GO:0009234,GO:0009636,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016209,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016765,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030173,GO:0030855,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031966,GO:0031967,GO:0031975,GO:0031984,GO:0032194,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033554,GO:0034405,GO:0035166,GO:0035167,GO:0035203,GO:0035204,GO:0035206,GO:0035207,GO:0042127,GO:0042175,GO:0042180,GO:0042181,GO:0042221,GO:0042325,GO:0042326,GO:0042362,GO:0042371,GO:0042373,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043409,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045446,GO:0045595,GO:0045596,GO:0045610,GO:0045611,GO:0045613,GO:0045614,GO:0045751,GO:0045936,GO:0046578,GO:0046580,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051188,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051716,GO:0055114,GO:0060255,GO:0060429,GO:0065007,GO:0070584,GO:0070887,GO:0071498,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0097237,GO:0098588,GO:0098754,GO:0098791,GO:0098827,GO:0098869,GO:1901576,GO:1901661,GO:1901663,GO:1902531,GO:1902532,GO:1903706,GO:1903707,GO:1990748,GO:2000026
Exons3
Evalue2.46e-48
EggNOG OGsCOG1575@1|root,KOG4581@2759|Eukaryota
Descriptionvitamin K biosynthetic process
Cds size342
COG categoryH
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870156.6904125-CDS-A-nodosum_M_contig8234:5863..59261680870156.6904125-CDS-A-nodosum_M_contig8234:5863..5926Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8234 5864..5926 +
1680870156.721767-CDS-A-nodosum_M_contig8234:6421..65711680870156.721767-CDS-A-nodosum_M_contig8234:6421..6571Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8234 6422..6571 +
1680870156.7315829-CDS-A-nodosum_M_contig8234:6993..71221680870156.7315829-CDS-A-nodosum_M_contig8234:6993..7122Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8234 6994..7122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8234.1.1prot_A-nodosum_M_contig8234.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8234 5864..7122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8234.1.1

>prot_A-nodosum_M_contig8234.1.1 ID=prot_A-nodosum_M_contig8234.1.1|Name=mRNA_A-nodosum_M_contig8234.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
LKYRGLGDITVFLLFGPMLMQVASLMICGEAQGWILPYGVPAALLCEAIL
HANNMRDIEQDRSAGITTLATTIGFRASQAHYRSMVLLAYAFAGVLALLR
HRGSALAFLTLPLA
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mRNA from alignment at A-nodosum_M_contig8234:5864..7122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8234.1.1 ID=mRNA_A-nodosum_M_contig8234.1.1|Name=mRNA_A-nodosum_M_contig8234.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1259bp|location=Sequence derived from alignment at A-nodosum_M_contig8234:5864..7122+ (Ascophyllum nodosum dioecious)
TTGAAATATCGCGGGCTGGGGGATATTACGGTTTTCCTCCTCTTCGGTCC
TATGTTAATGCAGGTAACACAATCGTATTGGTTAAAGTGTTGAGACTATT
GTATACTGTTAAAAAATACTATTGAAGCGAAAAAGGGCAACTTGACTAGC
TTGCAAGCTTCTAGCTGGGGCATCGATCGTAGTTTCCGCCGCTGCAAGGG
CGTGGTAAATCCACGAACGCGAGCGTCATCGTGGAAGTTCAGGCATCATG
CGATCACCTCAGGGATCTTATCTTTTTATTATTACAGTTCAAATAGTCCA
GTGTGGGGCAGCGGTGGAACTCGAAATTCGATTGGATTCATAGGGAAACC
CTAACCCTGATGTAGAGGTTACCAAGGTCACCGAGAATCCGATAGCTGCG
TTTTTTTACTGTACTCCCTACCAATCGGCTTGAAAACAGAGCATCGAGAG
CAAGTCGTCATCAACATCAATTCACAGATGATGACTGGCGACTGGCTGTT
GTTAGCTTCCTCCTCTTCTTTTCACGTGCTCGCCGACATCCCCGGGGTTT
CCACACAGGTGGCGTCCCTCATGATTTGCGGCGAGGCACAGGGCTGGATC
TTGCCTTACGGAGTGCCGGCGGCCTTGCTGTGTGAGGCTATCCTCCACGC
AAACAACATGCGCGACATCGAGCAAGACCGAAGTGCAGGCATCACTACCC
TCGCCACGGTGAGAGCTGCCGATAGTTAAAGTAATGGTTAGTTATCAACA
GAATGGCTGAGTCGATCCGGAAGATTCGTGTCACTTGCATCGTTATACGA
TATGCATACGATATACATACGTGAAGCATTCTAGGCTATAGTCCTGAAGC
TAGGCGAAAGCTAGACTCACTGCGTTACCGATTTTCCCAAGACTCTGAGT
GGTTTGGAGGACATAACGTGGCTCCAAGAGGCAGTTGCGGATCTGGTCAG
ACCCAAAGTACAGTCCGCGGGGCTTCGACCTCGAGGCCCTGGCCTAGCCT
CCTACGGTATGTAGGATTGAGGGACACATATACGTCATCCTTTCATGTCG
CGGAGATGGGACCGCTTGAACTATTTAACTCACAATGATTCAAATCATGT
CAACCTTCTACTGTTGTTCGCGCGCCACAGACGATTGGCTTCCGTGCCAG
CCAGGCTCATTACCGGAGCATGGTTTTGTTGGCCTACGCGTTTGCAGGAG
TCCTGGCGCTACTTCGCCACAGGGGATCCGCCCTCGCGTTCCTCACTCTA
CCGCTTGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8234:5864..7122+

>mRNA_A-nodosum_M_contig8234.1.1 ID=mRNA_A-nodosum_M_contig8234.1.1|Name=mRNA_A-nodosum_M_contig8234.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig8234:5864..7122+ (Ascophyllum nodosum dioecious)
TTGAAATATCGCGGGCTGGGGGATATTACGGTTTTCCTCCTCTTCGGTCC
TATGTTAATGCAGGTGGCGTCCCTCATGATTTGCGGCGAGGCACAGGGCT
GGATCTTGCCTTACGGAGTGCCGGCGGCCTTGCTGTGTGAGGCTATCCTC
CACGCAAACAACATGCGCGACATCGAGCAAGACCGAAGTGCAGGCATCAC
TACCCTCGCCACGACGATTGGCTTCCGTGCCAGCCAGGCTCATTACCGGA
GCATGGTTTTGTTGGCCTACGCGTTTGCAGGAGTCCTGGCGCTACTTCGC
CACAGGGGATCCGCCCTCGCGTTCCTCACTCTACCGCTTGCT
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