mRNA_A-nodosum_M_contig1011.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1011.29.1
Unique NamemRNA_A-nodosum_M_contig1011.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.290e-25
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 1
Query:   22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVV 522
            +T  P AQF I GLV +P  YYRVP +RM LDLAV L +L  ++ VV +  D  L  P E A  FY +A II E   + R    Y  D WN LD+  L L++ G + R      G++    G ALY L APL+F R+LFFAQ+    G MIQV+  M +++++F VV
Sbjct:  783 LTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPL-TPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRC---ADGDN--SWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVV 943          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.480e-24
Identity = 69/170 (40.59%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   16 NRMTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525
            + +T FP A+FII G ++ P +YY+VP LRMCLDL   + ++ ++   V        ++ LEI    Y    I+ E   +     EY RD WN LDV +L LL  G + R++    G    +   ALY L APL F RILFFAQI  SQG MIQVM  M   + +F ++M
Sbjct: 1097 SSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMY----GQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIM 1262          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.190e-23
Identity = 68/170 (40.00%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   16 NRMTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525
            + +T FP A+FII GL++ P +YY+VP LRMCLDL   ++++ ++   V         + +EI    Y    I+ E   +     EY RD WN LDV +L LL  G + R++    G    Q   ALY L APL F RILFF QI  SQG +IQVM  M   + +F ++M
Sbjct:  852 SSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMY----GQVDDQSSRALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIM 1017          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.000e-21
Identity = 68/168 (40.48%), Postives = 96/168 (57.14%), Query Frame = 1
Query:   22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525
            +T FP A FI  G+VALP +YY+VPL+RM LD  V    LA +T  V  +++K      E+A   Y VAAI+ EA+ + +    Y  D W      AL +  A FLAR   + S       G  LY + +PL++ R+L++AQ+  SQG+ IQV+  M S++ QF VVM
Sbjct:  635 LTFFPGAHFIATGVVALPNSYYKVPLMRMALDATVFTAALAFFTSRVL-LFEKGSLTIAEMAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLARAIDSDS-----SWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVM 796          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.510e-20
Identity = 66/168 (39.29%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525
            +T FP A FI  G+VALP +YY+VPL+RM L+  +    LA +T  V  +++K      E+A   Y VAAI+ EA+ + +    Y  D W      AL +  A FLAR     S       G  LY + +PL++ R+L++AQ+  SQG+ IQV+  M S++ QF VVM
Sbjct:  544 LTFFPGAHFIATGVVALPNSYYKVPLMRMALEAMIFTAALAFFTSRVL-LFEKGQLTIAEVAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLARAIDPDS-----SWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVM 705          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.920e-16
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLL-ILLAVYTLVVAY---------------MYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQ 477
            +T FP AQ I+ GL A P  Y+RVP +RM LDL V + +++A+ T V+ +               +  ++L  P       + V  +  E   + R+   Y  D WN LD+ +L  L+ G + R+    S     Q+G A Y L APLL  R LFF QIH  QG MIQ
Sbjct:  706 LTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKS-----QLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQ 868          
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-14
Identity = 60/167 (35.93%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAV---LLILLAVYTLVVAYMYDKSLANPLEIALGFYAV--------AAIIA-----EASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMI 474
            +T FP AQFI+ GL A    Y+RVP++RM LDL V   +L+ L+ + L  +      +    +  + F  +         A+IA     E   + R+   Y  D WN LD+  L   + GF+AR+   T     +Q+G A Y L APLL  R LFF QIH  QG M+
Sbjct:  527 LTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWT-----QQLGPAFYALSAPLLVSRALFFVQIHPLQGPMV 688          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLB1_ECTSI7.290e-2543.71Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE6.480e-2440.59Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI2.190e-2340.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JMG8_9PHAE3.000e-2140.48Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI3.510e-2039.29Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5KJG3_9PHAE6.920e-1635.71Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE1.080e-1435.93Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1011contigA-nodosum_M_contig1011:218305..219574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMG5
PFAMsIon_trans,WD40
Model size527
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue2.24e-27
EggNOG OGsKOG3676@1|root,KOG3676@2759|Eukaryota
Descriptioncalcium ion transmembrane transport
Cds size504
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.1612818-UTR-A-nodosum_M_contig1011:218304..2183251680866370.1612818-UTR-A-nodosum_M_contig1011:218304..218325Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1011 218305..218325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866370.1753318-CDS-A-nodosum_M_contig1011:218325..2185291680866370.1753318-CDS-A-nodosum_M_contig1011:218325..218529Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1011 218326..218529 +
1680866370.1837876-CDS-A-nodosum_M_contig1011:219002..2192541680866370.1837876-CDS-A-nodosum_M_contig1011:219002..219254Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1011 219003..219254 +
1680866370.1944706-CDS-A-nodosum_M_contig1011:219526..2195741680866370.1944706-CDS-A-nodosum_M_contig1011:219526..219574Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1011 219527..219574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1011.29.1prot_A-nodosum_M_contig1011.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1011 218326..219574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1011.29.1

>prot_A-nodosum_M_contig1011.29.1 ID=prot_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp
MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYM
YDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFL
LSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAM
IQVMVLMVSKVLQFAVVM
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mRNA from alignment at A-nodosum_M_contig1011:218305..219574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1011.29.1 ID=mRNA_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1270bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:218305..219574+ (Ascophyllum nodosum dioecious)
GTAGATCTACAACGGAATCGAATGACGCTGTTTCCTGATGCGCAGTTCAT TATCGTGGGGCTAGTAGCCTTACCCTTCACATACTACCGCGTGCCCCTTC TCCGAATGTGCCTGGACCTCGCCGTGCTCCTGATTTTGCTCGCTGTTTAC ACCTTGGTCGTGGCCTACATGTACGACAAATCTTTGGCGAATCCGCTCGA GATCGCGCTCGGGTTCTATGCCGTCGTGAGTGTGTTGCACTACATGTTGC GGCAACCTAGCCAGCAGGGTCGTTCGCTTTATTAAGGGCAAAACAGGTAT TGCTGTTCAAGTATGCCCCACAGCTCCCCCGAAAAAATATGCTTCGAACT ACAGAGAAAAATATCGTCATGCCCCTAATAAAATGTATACGTGTCGTGAG CGGGTCGTCACCGATCGAACGCTTGGGCTAGAGATCCAGGTTCGACGAAG GCGTGTAGGCAGAGCCACGCCGTATCAAAGATCGCTAAGACAGAAAGGAT GAAGTGCAACATCGCACAAATGTGTGCCCACAGGAGGCACCATTCGTTCG GCACGAGAGCGGGTTCCGCTTTTAACATAGCGGGCTTTCGGCGCTAAACA TGCGTAGATTACGGTGCTCCCGGAGGCTGTGGAGCCTTCCATTGACCCTG CGACGTACTCGATTAATGATTCGTCACCTTGCGGCTGTCCTTCGCCAGGC CGCGATCATCGCAGAGGCTAGCGCACTAGGAAGGAGTAACCGTGAGTACT TCAGGGATAGCTGGAACTGGCTAGACGTGCCCGCCCTTTTTCTACTCTCT GCGGGGTTCCTCGCCCGCCTCTGGAGCACGACGAGCGGAAACGATTTGAA GCAAGTAGGGGAAGCCCTCTACCTCCTCGTTGCTCCGCTTTTGTTCCCTC GCATCCTTTTTTTCGCTCAGATTCACTCTTCCCAGGGAGCTATGATACAG GTGAGACCAGTCCCGAAATAAGTGACCTAGAAGCATTCGCCCATTCCTCA TTTCATGCCGGGCCGGGCGTCGCCGACGCGACCTTGAATCTCGACAAACA CCTTCTGTTGGAAATAGCCAGCAACTTGTGTTCACGTTGTCTTCGAGACC TTCTGCAGGGCGACGAAGCCATGAAAAGAAACATCGACGCCTAAATCCTC TGTGCGAGATAACTCAGCGCTGCACAGATTCCCAATATTCTGACCTGTAT TTGTGTGTACGCCACCGGCCAGGTGATGGTCCTCATGGTAAGCAAGGTGC TGCAATTCGCCGTTGTGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1011:218305..219574+

>mRNA_A-nodosum_M_contig1011.29.1 ID=mRNA_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:218305..219574+ (Ascophyllum nodosum dioecious)
ATGACGCTGTTTCCTGATGCGCAGTTCATTATCGTGGGGCTAGTAGCCTT
ACCCTTCACATACTACCGCGTGCCCCTTCTCCGAATGTGCCTGGACCTCG
CCGTGCTCCTGATTTTGCTCGCTGTTTACACCTTGGTCGTGGCCTACATG
TACGACAAATCTTTGGCGAATCCGCTCGAGATCGCGCTCGGGTTCTATGC
CGTCGCCGCGATCATCGCAGAGGCTAGCGCACTAGGAAGGAGTAACCGTG
AGTACTTCAGGGATAGCTGGAACTGGCTAGACGTGCCCGCCCTTTTTCTA
CTCTCTGCGGGGTTCCTCGCCCGCCTCTGGAGCACGACGAGCGGAAACGA
TTTGAAGCAAGTAGGGGAAGCCCTCTACCTCCTCGTTGCTCCGCTTTTGT
TCCCTCGCATCCTTTTTTTCGCTCAGATTCACTCTTCCCAGGGAGCTATG
ATACAGGTGATGGTCCTCATGGTAAGCAAGGTGCTGCAATTCGCCGTTGT
GATG
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