mRNA_A-nodosum_M_contig10108.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10108.1.1
Unique NamemRNA_A-nodosum_M_contig10108.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151TGU0_CAJCA (Copia protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGU0_CAJCA)

HSP 1 Score: 47.4 bits (111), Expect = 4.450e-6
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K  SDG + K KARLVARGF QQ G+D+
Sbjct:   33 KWLFKLKLNSDGTVAKYKARLVARGFTQQYGLDF 66
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BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SM08_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWVF  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:  710 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 743
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BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5N6MMS5_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMS5_9ASTR)

HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  K  SDG I + KARLVARGF QQLG+DY
Sbjct:  594 KWVYKLKFKSDGSIDRYKARLVARGFNQQLGLDY 627
[Close]
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151UDQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDQ7_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.230e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWVF  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:   29 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 62
[Close]
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5B7BX31_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BX31_DAVIN)

HSP 1 Score: 48.1 bits (113), Expect = 9.580e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW++  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:   45 KWIYKIKTRSDGSIERYKARLVARGFTQEYGIDY 78
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BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A1R3K8M3_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3K8M3_COCAP)

HSP 1 Score: 48.9 bits (115), Expect = 1.250e-5
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT  DG I + KARLVARGF QQ GVDY
Sbjct:  901 KWVYKVKTRPDGAIERYKARLVARGFSQQYGVDY 934
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BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2P6P7L4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P7L4_ROSCH)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K  SDG I++ KARLVARGF Q+ G+DY
Sbjct:   72 KWIFKVKKNSDGSISRQKARLVARGFSQEEGIDY 105
[Close]
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9GF65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GF65_FAGSY)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT +DG++ + KARLVARGF Q+ G+DY
Sbjct:   92 KWVYKIKTRADGFVERYKARLVARGFTQEYGIDY 125
[Close]
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: UPI000901C7C2 (uncharacterized protein LOC109126311 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901C7C2)

HSP 1 Score: 48.9 bits (115), Expect = 1.270e-5
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K   DG I + KARLVARGF QQ GVDY
Sbjct:   42 KWIFTLKYNPDGSIARYKARLVARGFNQQYGVDY 75
[Close]
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9ETQ8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ETQ8_FAGSY)

HSP 1 Score: 48.5 bits (114), Expect = 1.710e-5
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT +DG I + KARLVARGF QQ G+DY
Sbjct: 1249 KWVYKVKTRADGSIERYKARLVARGFSQQYGLDY 1282
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151TGU0_CAJCA4.450e-661.76Copia protein (Fragment) n=1 Tax=Cajanus cajan Tax... [more]
A0A151SM08_CAJCA9.140e-667.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6MMS5_9ASTR9.140e-667.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A151UDQ7_CAJCA9.230e-667.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B7BX31_DAVIN9.580e-661.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1R3K8M3_COCAP1.250e-567.65Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A2P6P7L4_ROSCH1.260e-561.76Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9GF65_FAGSY1.260e-558.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI000901C7C21.270e-564.71uncharacterized protein LOC109126311 n=1 Tax=Camel... [more]
A0A2N9ETQ8_FAGSY1.710e-564.71Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10108contigA-nodosum_M_contig10108:8056..8157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15712908
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size102
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.85e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa
DescriptionEncoded by
Cds size102
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866369.771429-CDS-A-nodosum_M_contig10108:8055..81571680866369.771429-CDS-A-nodosum_M_contig10108:8055..8157Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10108 8056..8157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10108.1.1prot_A-nodosum_M_contig10108.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10108 8056..8157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10108.1.1

>prot_A-nodosum_M_contig10108.1.1 ID=prot_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp
KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY
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mRNA from alignment at A-nodosum_M_contig10108:8056..8157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)
AAATGGGTGTTTGCTTGGAAGACTGGTTCTGACGGTTATATCACGAAGGC
TAAGGCGAGGTTGGTAGCACGTGGTTTTGGACAGCAGCTTGGCGTGGACT
AT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10108:8056..8157+

>mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)
AAATGGGTGTTTGCTTGGAAGACTGGTTCTGACGGTTATATCACGAAGGC
TAAGGCGAGGTTGGTAGCACGTGGTTTTGGACAGCAGCTTGGCGTGGACT
AT
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