prot_A-nodosum_M_contig12083.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig12083.6.1
Unique Nameprot_A-nodosum_M_contig12083.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length73
Homology
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BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.310e-25
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 LRQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLDYEWGCYERVSQLKALHTWLDRRGARERVLKV 70
            +R+LG ++VRLKPLG DRDRRRYWL   GEDHR+F + +  WGCY RVSQLKALH WLDRRG RER LK 
Sbjct: 1106 VRELGSVKVRLKPLGLDRDRRRYWLFATGEDHRLFVEHNEVWGCYARVSQLKALHKWLDRRGVRERTLKA 1175
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BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Match: UPI001FB0EC64 (DDT domain-containing protein DDB_G0282237 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0EC64)

HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 0 
Query:    2 RQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLD--YEWGCYERVSQLKALHTWLDRRGARERVLKV 70
            R++  + +R  PLG DRD  RYW   +  D R+F +     +WG Y    +L+AL   L+R+G RER LK+
Sbjct:  559 REMEKIIIRTTPLGKDRDYNRYWFFRR--DGRLFVESSDSKQWGYYSTKDELEALMGSLNRKGERERALKL 627
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6R7_ECTSI1.310e-2570.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001FB0EC643.680e-539.44DDT domain-containing protein DDB_G0282237 n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028941WHIM2 domainPFAMPF15613WSDcoord: 39..69
e-value: 3.8E-6
score: 27.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:9016..9730 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.6.1mRNA_A-nodosum_M_contig12083.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig12083 9016..9730 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig12083.6.1 ID=prot_A-nodosum_M_contig12083.6.1|Name=mRNA_A-nodosum_M_contig12083.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
LRQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLDYEWGCYERVSQ
LKALHTWLDRRGARERVLKVTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028941WHIM2_dom