mRNA_A-nodosum_M_contig12083.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12083.6.1
Unique NamemRNA_A-nodosum_M_contig12083.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.310e-25
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 LRQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLDYEWGCYERVSQLKALHTWLDRRGARERVLKV 210
            +R+LG ++VRLKPLG DRDRRRYWL   GEDHR+F + +  WGCY RVSQLKALH WLDRRG RER LK 
Sbjct: 1106 VRELGSVKVRLKPLGLDRDRRRYWLFATGEDHRLFVEHNEVWGCYARVSQLKALHKWLDRRGVRERTLKA 1175
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BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Match: UPI001FB0EC64 (DDT domain-containing protein DDB_G0282237 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0EC64)

HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    4 RQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLD--YEWGCYERVSQLKALHTWLDRRGARERVLKV 210
            R++  + +R  PLG DRD  RYW   +  D R+F +     +WG Y    +L+AL   L+R+G RER LK+
Sbjct:  559 REMEKIIIRTTPLGKDRDYNRYWFFRR--DGRLFVESSDSKQWGYYSTKDELEALMGSLNRKGERERALKL 627
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6R7_ECTSI1.310e-2570.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001FB0EC643.680e-539.44DDT domain-containing protein DDB_G0282237 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:9016..9730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.15e-26
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size219
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866634.5899463-CDS-A-nodosum_M_contig12083:9015..91441680866634.5899463-CDS-A-nodosum_M_contig12083:9015..9144Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 9016..9144 -
1680866634.608312-CDS-A-nodosum_M_contig12083:9640..97301680866634.608312-CDS-A-nodosum_M_contig12083:9640..9730Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 9641..9730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.6.1prot_A-nodosum_M_contig12083.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12083 9016..9730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12083.6.1

>prot_A-nodosum_M_contig12083.6.1 ID=prot_A-nodosum_M_contig12083.6.1|Name=mRNA_A-nodosum_M_contig12083.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
LRQLGHLRVRLKPLGTDRDRRRYWLLTQGEDHRVFTQLDYEWGCYERVSQ
LKALHTWLDRRGARERVLKVTD*
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mRNA from alignment at A-nodosum_M_contig12083:9016..9730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12083.6.1 ID=mRNA_A-nodosum_M_contig12083.6.1|Name=mRNA_A-nodosum_M_contig12083.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:9016..9730- (Ascophyllum nodosum dioecious)
CTTAGGCAACTGGGGCATCTGAGGGTTCGGTTAAAGCCTCTCGGCACTGA
CCGCGACCGTCGCCGCTACTGGCTGCTAACTCAGGGAGAGGTGGGCACTC
GCGAGCGAACGTGAACCTGTGGCAATATTGTTCACTCTAGTGAAGTCTTG
CTTCGCCCTTTTGGCGTAGTTTTTGCGCCGAGTTCTTGGAAGTCAATTCT
TGGTATGTGTCTTGTCGTGAACGATCGTTCCAAGTACAACAGTGGCTCTT
AGAGCGATCGTAGATGCATGTGGTGGTGGTCACAATGGCTCAACCGTCCT
GTTTTGTATGCCCTCCACGGTCGAAAGTAGTACTGGTACGTATGAACAAC
TACTGATGCCGTGAATAGCTTCATGTTATTAACAAGACAGCTTTTTCTGT
ACATGATGTCCGTCGCGCGTTGTGCCGATCTCACATTTTCTGAGACCGTG
CCACGCCAAAGCACCCGTTTCTTGGCCCTTCATGACAGTTTCCAGGATGT
TTTATGTTTTGTTGAGGCCACGCCACGAAGTCGGCTTTGCCATCGCCGTT
AACCCCGCTTTGCCATCATCGTTGTCGTTGTCGCAGGATCACCGAGTCTT
CACACAACTTGATTATGAGTGGGGCTGCTACGAAAGGGTGTCGCAGCTGA
AGGCCTTGCACACCTGGCTGGATAGGAGAGGGGCCAGGGAGCGCGTGTTG
AAGGTGACGGACTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12083:9016..9730-

>mRNA_A-nodosum_M_contig12083.6.1 ID=mRNA_A-nodosum_M_contig12083.6.1|Name=mRNA_A-nodosum_M_contig12083.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:9016..9730- (Ascophyllum nodosum dioecious)
CTTAGGCAACTGGGGCATCTGAGGGTTCGGTTAAAGCCTCTCGGCACTGA
CCGCGACCGTCGCCGCTACTGGCTGCTAACTCAGGGAGAGGATCACCGAG
TCTTCACACAACTTGATTATGAGTGGGGCTGCTACGAAAGGGTGTCGCAG
CTGAAGGCCTTGCACACCTGGCTGGATAGGAGAGGGGCCAGGGAGCGCGT
GTTGAAGGTGACGGACTAA
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