mRNA_A-nodosum_M_contig12004.1.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: D7FRJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ7_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.820e-100 Identity = 155/330 (46.97%), Postives = 214/330 (64.85%), Query Frame = 1
Query: 19 LFWPLQAWKSSGLVVILDDDSIDDHATGTILSNLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQVSRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVENYDFRKIKTK-RTTLSFDEPASSANIPTMFIMKHISDDTPAILSKDLYDVLCVGSDFEAGDCSRANRTR--AYSTTAKRCTGHWSVGNRSWNDTLQNHIEGVRHHSSAFVWRSEVQADKAVVG 999
+FWP+ +WKSSGLVVILD DS DH GT+L N+ L + ++V+YET P T C NWR +GY+RQQ+SNFYADLY DA++ I D +DA F +PV SDLF +GKP +RG + +++W + R+A GG VG FMT +FP+++K+ H +QMR+ IA NLG+ TFE+AF IC ++ YSQF+IM NYLWYY +EY W IA +N DF + + R S D +AN+P +F+MKH+ D L+ D+Y+ +C+GS+ EAG+C R + ++ T K WSVG+ +W DT ++H V SAF WR E D VG
Sbjct: 82 MFWPISSWKSSGLVVILDGDSAFDHRIGTLLQNINLPSKVQVKYETPAPPGTLCNNWRSEGYARQQYSNFYADLYTDADYMGIID-TDAAFISPVVPSDLFDEGKPILRGMNIITQWQSETSRKATGGFPYVGRFMTRIAFPIIIKSEHFSQMRQVIAENLGAETFEEAFKVICSAGKESYSQFEIMINYLWYYHHDEYSWHIADRDNGDFHGLNLQGRARASDDGSVVAANVPAIFVMKHLDDKDVFTLNDDMYENVCLGSNNEAGNCQRRPPAQNDGHAQTLK-----WSVGSTTWGDTYKDHSRRVSRAGSAFQWRGEEDEDWVHVG 405
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A3M7T151_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T151_BRAPC) HSP 1 Score: 202 bits (515), Expect = 1.140e-56 Identity = 111/285 (38.95%), Postives = 171/285 (60.00%), Query Frame = 1
Query: 19 LFWPLQAWKSSGLVVILDDDSIDDHATGTILSNLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQV-SRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVENYDFRKIKTKRTTLSFDEPASSANIPTMFIMKHISD--DTPAILSKDLYDVLCVGSDFEAGDCSRANRTRAYSTTAK 864
+FWP + WK+S +V++LD ++ DH G++L++L +V +E P + T C NWR GYSR Q+SNFY+DLY D E+ AI D SD+ F A V DLFVDGKP++ G++ +RW + ++A+G + +G FM +FP+++K +H Q+R I + + + TFE+AFH IC + YSQFD++ +YLWY+KRNEY W + V + ++ KR T D + N P + + KH + P + K ++D +CV SD +AG C ++ T K
Sbjct: 112 IFWPHKTWKNSDMVIVLDSENELDHRMGSVLAHLYPYP--KVFFEKMPQKATFCSNWRNIGYSRTQYSNFYSDLYTDKEYIAIVD-SDSYFVAQVTPEDLFVDGKPRIIGYNGCCTRWLNSI-KEALGV-DPLGEFMNRGNFPIIIKRNHFKQIRMHITKTMATRTFEEAFHSICSKYKGQYSQFDLLVHYLWYFKRNEYSWHLKDVLEFGHYRMP-KRATNDTDVIQMN-NKPMISVAKHAGSLLNYPNYMFKIMFDYMCVASDNQAGSCGSLFGKELFNQTLK 389
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A6H5K9S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S0_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.700e-46 Identity = 95/233 (40.77%), Postives = 128/233 (54.94%), Query Frame = 1
Query: 292 TAPVFVSDLFVDG-KPKVRGFDQVSRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVENYDFRKIKTKRTTLSFDEPASSANIPTMFIMKHISDDTPAILSKDLYDVLCVGSDFEAGDCSRANRTRAYSTT-AKRCTGHWSVGNRSWNDTLQNHIEGVRHHSSAFVWRSEVQAD 984
T V SDLF D KP ++G + S W ++ ++AIGG E VG FMTP FP+++K+ H MR DI RNLG+ATF +AFH IC + YSQF+IM YLWY K +EY W IA N D + + D+ + N+P + +MKH T + D YD LC+GS+ AG+C ++R S T WSVGN++W T + H + AF WR E D
Sbjct: 16 THAVVPSDLFDDDRKPFIKGVNCGSPWRSEVTKRAIGGVESVGRFMTPMIFPVIVKSDHFDDMRRDITRNLGAATFAEAFHMICSEGANSYSQFEIMVTYLWYNKHDEYSWHIADPANMDAKSLNIGDKRYYEDDRVVATNVPVIVVMKHSKIRTS--IDSDTYDYLCLGSNNLAGNC----QSRVPSPLDGSAQTVQWSVGNQTWMHTYEEHSTKLSRAGKAFRWRRETAQD 242
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A3P3YPH4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPH4_PLABS) HSP 1 Score: 172 bits (435), Expect = 1.220e-45 Identity = 105/271 (38.75%), Postives = 150/271 (55.35%), Query Frame = 1
Query: 16 QLFWPLQAWKSSGLVVILDDDSIDDHATGTILSNLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQV-SRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVENYD-FRKIKTKRTTLSFDEPASSANIPTMFIMKHISDDTPAILSKDLYDVLCVGSDFEAGDC 822
QLFWP +AW +S +VV+LD +S D ++LS L + +E KP C ++R +GY RQ +SNF+AD +A+F F DSD +F PV V DLFV GKP+V ++ + W ++R AIGG+ V FMT SFP ++ H A MR IAR LG+ATF+ AFH IC + YSQ+D+M +YLWY R++Y W +D F+ ++ D A+ P + +MK I L D +CV +++ A C
Sbjct: 77 QLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSRLPPFPAVV--FEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVG-FVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGGKP-VAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTICAEYGEQYSQYDLMGHYLWYAHRDDYAWHFRAPRGHDAFQAAQSDDA----DVLAAMQTRPAVSLMKMIGHSDFGSLLTVWSDYVCVAANWTAPGC 337
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A0G4J7L3_PLABS (Uncharacterized protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7L3_PLABS) HSP 1 Score: 160 bits (405), Expect = 6.600e-43 Identity = 91/212 (42.92%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 16 QLFWPLQAWKSSGLVVILDDDSIDDHATGTILSNLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQV-SRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVENYD 648
QLFWP +AW +S +VV+LD +S D ++LS L + +E KP C ++R +GY RQ +SNF+AD +A+F F DSD +F PV V DLFV GKP+V ++ + W ++R AIGG+ V FMT SFP ++ H A MR IAR LG+ATF+ AFH IC +H Q+D+M +YLWY R++Y W +D
Sbjct: 18 QLFWP-RAWTNSDVVVVLDAESAHDWRVASVLSRLPPFPAVV--FEAKPGPGVLCASFRSEGYCRQMYSNFFADRQTEADFVG-FVDSDTMFITPVAVGDLFVGGKPRVSAYNGCCTGWNSPIER-AIGGKP-VAEFMTSSSFPFIVHRGHFAPMRAHIARTLGAATFDDAFHTICAEYGEH--QYDLMGHYLWYAHRDDYAWHFRAPRGHD 221
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A6H5JZ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ07_9PHAE) HSP 1 Score: 108 bits (271), Expect = 5.170e-24 Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 13 AQLFWPLQAWKSSGLVVILDDDSIDDHATGTILSNLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAP 300
+QLFWP+ +W SSG+VVILD ++ DH GTIL ++ +V+YE P T CG+WR++GY+RQQ+SNFY +LY DAE+ AI D +D AP
Sbjct: 83 SQLFWPISSWTSSGVVVILDGENALDHEAGTILQHMNFPFVFQVKYEAPAPNGTLCGDWRKEGYARQQYSNFYGNLYTDAEYVAIID-TDTKIIAP 177
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A482QXN1_9EURY (Uncharacterized protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482QXN1_9EURY) HSP 1 Score: 97.1 bits (240), Expect = 2.840e-18 Identity = 79/211 (37.44%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 28 PLQAWKSSGLVVILDDDSIDDHATGTILSN-LQLVT-PIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVD-GKPKVR---GFDQVSRWTGDLQRQAIG-GREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVE 639
PLQ +V+LDD+S DH G L++ LQ P ++RYE PE + +G++RQQ S F+AD ++ +F A F DSD +FT + DLF D G+P++ G Q S W A+ G+ V M+ FP+++KT HLA +RE I+ LG F+ F + H YSQF+IM NY WY+ ++EY W + E
Sbjct: 84 PLQM---QSFMVVLDDESPADHNLGAQLNHSLQAWNFPAQIRYER--PEQY----YGDRGHNRQQWSMFWADRHVSGKFVA-FVDSDTIFTTQIHAGDLFDDVGRPRIIANVGAPQNSFWHDAPAATALALGKPEVLRCMS--YFPVILKTQHLAALREHISSTLGG-DFDTVFQR--HIVTRTYSQFNIMCNYAWYFHKDEYSWHMQERE 279
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A1E7EJM5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJM5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.380e-9 Identity = 67/223 (30.04%), Postives = 97/223 (43.50%), Query Frame = 1
Query: 16 QLFWPLQAWKSSGLVVILDDDSID-------DHATGTILS--NLQLVTPIRVRYETKPPENTTCGNWRRKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVD-GKPKV-----------RGFDQVSRWTGDLQRQAIGGREGVGSFMTPFSFPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFW 621
Q FWP + ++ L ++LDD D T+ S N L I V Y + G GY+ QQ F+AD + DA + I DD D +F+ V DLF + G+P +G+ + W A+G R + M+ FP+++ HL +R++I R F K +D YSQF IMF YLW + RN+Y W
Sbjct: 111 QFFWPTEYFR---LTLVLDDTVYQNNNLTERDQMNDTVRSFFNFDLRDHIDVVYNPRSDPEEFHG-----GYNIQQLIGFWADNFTDAAYIGIMDD-DTIFSKAVQPEDLFDERGRPHAIVKYPTGPKFPKGWYNGTNW-------ALG-RSAYTNAMS--YFPVILHRKHLPMIRQEILRVHPEFDTFDDFFKFLSREKDAYSQFCIMFEYLWMHHRNDYNW 314
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Match: A0A482SNW7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNW7_9ARCH) HSP 1 Score: 69.7 bits (169), Expect = 2.020e-9 Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query: 193 RKGYSRQQHSNFYADLYMDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQVSRWTGDLQRQAIGGREGVGSFMTPFS-FPLVMKTSHLAQMREDIARNLGSATFEQAFHKICHGSEDHYSQFDIMFNYLWYYKRNEYFWTIARVE 639
R GY R Q F AD Y++ E+ FD SDA D + +GKP + G ++S DL + G M+ S FP+++K SHLA +RE I +TFE+A++ G+ +Q++IM +L+ +R+EY W + +E
Sbjct: 47 RNGYGRMQFLGFMADKYIEEEYIFFFD-SDAFLHTYADREDFWENGKPIISG--RLSYTNHDLFFKKTYDALGKEEIMSCMSYFPILIKRSHLAPIREAIREYRNKSTFEEAYYDFTLGNPG--AQYNIMCTWLFLNRRDEYAWRLKDLE 191 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12004.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig12004.1.2 >prot_A-nodosum_M_contig12004.1.2 ID=prot_A-nodosum_M_contig12004.1.2|Name=mRNA_A-nodosum_M_contig12004.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=254bp MDAEFAAIFDDSDALFTAPVFVSDLFVDGKPKVRGFDQVSRWTGDLQRQAback to top mRNA from alignment at A-nodosum_M_contig12004:2684..4703- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig12004.1.2 ID=mRNA_A-nodosum_M_contig12004.1.2|Name=mRNA_A-nodosum_M_contig12004.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2020bp|location=Sequence derived from alignment at A-nodosum_M_contig12004:2684..4703- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig12004:2684..4703- >mRNA_A-nodosum_M_contig12004.1.2 ID=mRNA_A-nodosum_M_contig12004.1.2|Name=mRNA_A-nodosum_M_contig12004.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at A-nodosum_M_contig12004:2684..4703- (Ascophyllum nodosum dioecious)back to top |