mRNA_A-nodosum_M_contig101.52.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig101.52.1
Unique NamemRNA_A-nodosum_M_contig101.52.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig101contigA-nodosum_M_contig101:901255..903276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size201
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.9755886-UTR-A-nodosum_M_contig101:901254..9012771680866367.9755886-UTR-A-nodosum_M_contig101:901254..901277Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig101 901255..901277 +
1680866368.0086796-UTR-A-nodosum_M_contig101:903215..9032761680866368.0086796-UTR-A-nodosum_M_contig101:903215..903276Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig101 903216..903276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.9860451-CDS-A-nodosum_M_contig101:901277..9013281680866367.9860451-CDS-A-nodosum_M_contig101:901277..901328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 901278..901328 +
1680866367.998977-CDS-A-nodosum_M_contig101:903149..9032151680866367.998977-CDS-A-nodosum_M_contig101:903149..903215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 903150..903215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig101.52.1prot_A-nodosum_M_contig101.52.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig101 901278..903215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig101.52.1

>prot_A-nodosum_M_contig101.52.1 ID=prot_A-nodosum_M_contig101.52.1|Name=mRNA_A-nodosum_M_contig101.52.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
MTPHFLIWSLGPKAGSVFEELVKRKKYLVLRVCPTLVQ*
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mRNA from alignment at A-nodosum_M_contig101:901255..903276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig101.52.1 ID=mRNA_A-nodosum_M_contig101.52.1|Name=mRNA_A-nodosum_M_contig101.52.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2022bp|location=Sequence derived from alignment at A-nodosum_M_contig101:901255..903276+ (Ascophyllum nodosum dioecious)
TGACTCTGAGGCGTGACTGTCTTATGACACCGCATTTCCTAATATGGTCG
TTAGGACCCAAAGCAGGATCTGTCGACGGAATGTGTCATCAAACAGATTC
TATGAACAGATTCTATCTGGACGTTAAGACAGGGCCTAACGAGAATGGAA
CCATAAAACTCCCCCGGTATGTAAATATTCACCTCCGAAATGTCCGTATC
AGACAAAAACGTTTTTGGACCATGTTTTTCTGTCTTGTAAAAGTTGCCGT
ATAGAGTCAGTAAAAATTGCTACTCGTAGAAGGCATCAGGGATCCTGCGG
CCATAACAGACTGGCGTGATTCACCCAGATTACAATCCCGCAGGGTATGG
CTCCGTCCTCGCGATCGCGGTAAATCTGCCTGCGCAGGCAGAATTTGAGA
ACCTGCCTGCATAAATAGAACCAGAAAAGCAGAGCAACTTTCTCTGGAAA
CCTACCATTTTTTAATCCAGCACGTGGATATATCTGGACGGCGGTGCAGG
GTATGGCTTCCATCGAAAAAGCGAGTAGTTTCTGTGGTCACGGAATCCCT
TCGTTTGTGTTTCAACACCGGTTGGCCAATCCGACCCTAACGCTATCCCT
GACGCTAACCCAGACCCCCTTTCCTCAGCTGACCGCGAGGTCCCAGTTCA
TGGCTGGCGCTTGGTCATAGAACCCTGTGGGCTGGTTTTGTCCCTCCGTC
TGTGTTTCAGTTCAGGGTGGCAAACCCGACCCTACCGCCATCGTTAACGC
TAACCCAGAACTACTCCAGATGGCCGCGAGGTCCCAATTCATGGCTGGCG
CTTGATCATAGCACCCAGAGGGTTGGTTTTGTATGCGTGCCGCACGCGCG
CTGCTGTATGTGTGTGGTGCTGGATTAAACAATGGTGAGTTTTCACAGCA
AACCGCTCTGCTTTTCTGGATCTTTTTATGCAGGCAGGTTCTTAAATTCT
GTCTGCGCAGGCAGATAAACGCCGTCTGCCGTTCTCGTTCAGGCTGTCGC
TGTTGATTTTAAATGGTGTCAAAACTCTCTAAATGGTAGTCATGAGAAAT
CCGGGGCTTTTTGGGACTTATACGGGTGTGCTTGGAATGTGGATAAAGTA
AAAACGAACACACAATGTTTGTTGAGAGAGCTTGAACGAGGTAGGTTGGT
ACGGGGGAATATAACGCTGAATCTCCTGCGTATGACGACTGAAGACAACT
CCTGTACTCCAATGACCGTTTCGATATCTATCCGCAGATGTAACGATTTT
ACATGCAAACTCACATCCTCCCTGCTTTTCGAATCGTAAACATTGCAACT
TCACTAATATCAAAGTCATGCCCTCCCTGCTTTTTTGACGCAGCTCCCAA
AGCTGCAAATCATTCAAAAACTGATGTACTGTTCTGTCTTCGCTGTTTTT
CTGGTGTCCCTGCATGGCGGTTAAGGGCCTGTATTAACGTCTTGATAGAA
TCTGTTCATAAAATCTATCGACAGAATCTGTCGAAAATAAAGCTCTGTGA
TTGGCCAAATAAGCTCGACGCTACTAGTTGGCAAGTTCTGAACACGACAG
AATCTGTCGGAATGGACAGATTCTAATAATTGTTTTGGCATTTATTTTTT
GCTGTCAGTAAGCTGAATCTGTCGGGCGGACCCCAAAACATCAGAAGAAA
AGACACAAGCTGCTACATGCTGGAAACAGTACAACTGAAACCGATAAAAA
AAAAGAAACAGTATAACTGATACCCCGAGTAGTTGATTTTCTTGTGTACT
TCTTTAAGTACGCGCCGCTAACGCTGGGTCTGGACAACAGCAGTTGCGAG
CCCGACGAGTACACCGACTTTGATGTATTCTAGACGCCCCCAAACAACGC
GCGAGGTACCATGCACTACACGAGGTGTTGGGCTTTCATATATCGTTTGA
GGAGCTTGTGAAACGCAAAAAATATCTGGTGCTCCGTGTATGTCCTACTT
TGGTACAGTAAGTAGTTTGTTGCAGTCTGTTGACAGTCGTCACGGTTTAT
GGGGAGGCTTGACTGTCGGCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig101:901255..903276+

>mRNA_A-nodosum_M_contig101.52.1 ID=mRNA_A-nodosum_M_contig101.52.1|Name=mRNA_A-nodosum_M_contig101.52.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig101:901255..903276+ (Ascophyllum nodosum dioecious)
ATGACACCGCATTTCCTAATATGGTCGTTAGGACCCAAAGCAGGATCTGT
CTTTGAGGAGCTTGTGAAACGCAAAAAATATCTGGTGCTCCGTGTATGTC
CTACTTTGGTACAGTAA
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