mRNA_A-nodosum_M_contig1197.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1197.15.1
Unique NamemRNA_A-nodosum_M_contig1197.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1197.15.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.090e-82
Identity = 151/253 (59.68%), Postives = 169/253 (66.80%), Query Frame = 1 
Query:    1 PMVASTADKLSHPVTEKEAMRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEETKSQRAVLVFAEAQGAQAALQANGRDILGSNCSVGLASSMPPLHEGLGRENVSDQPDVGAGNSENRKMTYAEWVGSFLAQGMVYTRLFDEKLGVSQTAKVFAGKVQK----FDETHKVSGTVTAAAMTAAEQARIVDARLKVSETAFKWAQKTKESTGRAIESNPRVKAGVKQAGDAFTKVVTDVSEFAQLSL 747
            PM  S    L HPVT+ EA+RSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEE+++QRAVLVFA+  GA +ALQANGRDILG+NCSV LASSMP L++GL R+NVSDQP    G  E R +T AEW+    AQGMVYTRLFDEKLGVS TAK  A KVQ                                     ETA KWA   KEST +A+ESNPRV AGV QAGDA   +V  VS  A  ++
Sbjct:   11 PMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQP-AAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAM 262
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BLAST of mRNA_A-nodosum_M_contig1197.15.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.570e-25
Identity = 63/132 (47.73%), Postives = 90/132 (68.18%), Query Frame = 1 
Query:    7 VASTADKLSHPVTEKEAMRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEETKSQRAVLVFAEAQGAQAALQANGRDILGSNCSVGLASSMPPLHEGLGRENVSDQPDVGAGNSENRKMTYAEWV 402
            + + +D+L   VTE+EA RS+LVQGLP+LD + TE+++V+VFS YG  SKLLLQT  ++++QR V+VF ++ GA AALQ NGRDILG+ CSV L+S++   +E L +  V    +        R  T AEW+
Sbjct:  294 IIAESDELPE-VTEQEAARSVLVQGLPVLDLQPTEAALVEVFSVYGRASKLLLQTIHQSQTQRVVVVFKQSAGATAALQQNGRDILGARCSVSLSSTLAASNESLDQNGVRWLAERAENALNGRTPTTAEWI 424
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BLAST of mRNA_A-nodosum_M_contig1197.15.1 vs. uniprot
Match: A0A8J5LCI6_ZINOF (RRM domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LCI6_ZINOF)

HSP 1 Score: 63.5 bits (153), Expect = 4.510e-8
Identity = 67/234 (28.63%), Postives = 111/234 (47.44%), Query Frame = 1 
Query:   64 SILVQGLPLLDQELTES--SIVQVFSAYGEISKLLLQTNEETKSQRAVLVFAEAQGAQAALQANGRDILGSNCSVGLASSMPPLHEGLGRENVSDQPDVGAGNSENRKMTYAEWVGSFLAQGMVY-------TRLFDEKLGVSQTAKVFAGKVQKFDETHKVSGTVTAAAMTAAEQARIVDARLKVSET---AFKWAQKTKESTGRAIESNPRVKAGVKQAGDAFTKVVTDVSE 729
            S+ V+ + + +  L+ S   I + FS  G+I  + LQ+ +E  SQ A + F ++QGA+ AL  +G  I+  +  V  A            E+   +   G+G+   +     + V S LA+G +         + FDEK  ++ TA   + +V  FD+   ++  ++       E+ ++VD RLKVSET   AF  A++T  + G AI  N  V  G      AF+KV    S+
Sbjct:    2 SVTVRSVKISNVSLSASVQDIKEFFSFSGDIEHVELQSADEW-SQIAYVTFRDSQGAETALLLSGATIVDLSVIVTPAPEYQVPTVVSAPEHNEAKATSGSGSVVQKA---EDVVTSMLAKGFILGKDAVNKAKTFDEKHSLTSTA---SSRVASFDKKIGLTEKISMGTSAVNERVKVVDERLKVSETTKSAFTAAEQTISNAGSAIMKNRYVFTGASWVTGAFSKVAKAASD 228
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1197.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI1.090e-8259.68RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE1.570e-2547.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A8J5LCI6_ZINOF4.510e-828.63RRM domain-containing protein n=1 Tax=Zingiber off... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1197contigA-nodosum_M_contig1197:200424..204441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3885.XP_007158267.1
PFAMsRRM_1
Model size927
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0097159,GO:1901363
Exons8
Evalue2.72e-12
EggNOG OGs28J7W@1|root,2QRKA@2759|Eukaryota,37IMH@33090|Viridiplantae,3GAKQ@35493|Streptophyta,4JN2J@91835|fabids
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_009520.1
DescriptionRNA binding
Cds size861
COG categoryA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1197.15.1prot_A-nodosum_M_contig1197.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1197 200427..204378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866615.3905616-UTR-A-nodosum_M_contig1197:200423..2004261680866615.3905616-UTR-A-nodosum_M_contig1197:200423..200426Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 200424..200426 +
1680866615.559101-UTR-A-nodosum_M_contig1197:204378..2044411680866615.559101-UTR-A-nodosum_M_contig1197:204378..204441Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 204379..204441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866615.4768891-CDS-A-nodosum_M_contig1197:200426..2005491680866615.4768891-CDS-A-nodosum_M_contig1197:200426..200549Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 200427..200549 +
1680866615.485879-CDS-A-nodosum_M_contig1197:201463..2015181680866615.485879-CDS-A-nodosum_M_contig1197:201463..201518Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 201464..201518 +
1680866615.4944625-CDS-A-nodosum_M_contig1197:201803..2018651680866615.4944625-CDS-A-nodosum_M_contig1197:201803..201865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 201804..201865 +
1680866615.5060441-CDS-A-nodosum_M_contig1197:202171..2022861680866615.5060441-CDS-A-nodosum_M_contig1197:202171..202286Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 202172..202286 +
1680866615.5146174-CDS-A-nodosum_M_contig1197:202641..2027751680866615.5146174-CDS-A-nodosum_M_contig1197:202641..202775Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 202642..202775 +
1680866615.525282-CDS-A-nodosum_M_contig1197:203071..2031631680866615.525282-CDS-A-nodosum_M_contig1197:203071..203163Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 203072..203163 +
1680866615.5355504-CDS-A-nodosum_M_contig1197:203576..2036371680866615.5355504-CDS-A-nodosum_M_contig1197:203576..203637Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 203577..203637 +
1680866615.5489905-CDS-A-nodosum_M_contig1197:204159..2043781680866615.5489905-CDS-A-nodosum_M_contig1197:204159..204378Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 204160..204378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1197.15.1

>prot_A-nodosum_M_contig1197.15.1 ID=prot_A-nodosum_M_contig1197.15.1|Name=mRNA_A-nodosum_M_contig1197.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=287bp
MVASTADKLSHPVTEKEAMRSILVQGLPLLDQELTESSIVQVFSAYGEIS
KLLLQTNEETKSQRAVLVFAEAQGAQAALQANGRDILGSNCSVGLASSMP
PLHEGLGRENVSDQPDVGAGNSENRKMTYAEWVGSFLAQGMVYTRLFDEK
LGVSQTAKVFAGKVQKFDETHKVSGTVTAAAMTAAEQARIVDARLKVSET
AFKWAQKTKESTGRAIESNPRVKAGVKQAGDAFTKVVTDVSEFAQLSLRG
LEPQQQPQQQGEAQEGFQPANPTNGSFKMGPGKSNP*
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mRNA from alignment at A-nodosum_M_contig1197:200424..204441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1197.15.1 ID=mRNA_A-nodosum_M_contig1197.15.1|Name=mRNA_A-nodosum_M_contig1197.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4018bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:200424..204441+ (Ascophyllum nodosum dioecious)
CCCATGGTAGCAAGCACGGCAGACAAATTGTCGCACCCTGTGACGGAGAA
GGAGGCCATGCGCTCCATTCTGGTACAGGGACTGCCGCTGCTCGACCAGG
AGCTAACGGAGTCTTCAATCGTCCAGGTGAGTGCCATGGGTTAATCTTGT
ATGCACGATCACTTTTACTGTAGAGTTAAATATAGAAGATGAGTTCCATC
TCGCAATCCTCCGACTTGGAGCTGCTAAACGTATGACACGAAGACACGCC
AATTAAACGATATCAGAGGGAAGGAAAGGAAAGGAAGGCTCCATCCGATT
CTTTTCACACTTCGTAAAGGCCATCGTCTAGAGCAGGAGTCAAGTATAGT
CTTTGATGTCATGTGATGATGATGATAACAAAAGAGACGTGCGTCACTGC
ATGTAAGGCACAAGACAAAGAAGACGCACAAGACGCGATATAACAGAACA
GTGCTATCCACGATTTCAATACAGTATTTGTACTCTTAGAGTTATGCTCT
ACTGTTTTGTTTTCTATAGTATCCTGCCAATAGTCTCTATAATAGTACGA
ATAATAGTCAAAATGATAACGGTTGCTGCTATCAAAAGCGCGTTTTCTGA
AGTATTGATAGTATTAGTGTTAGTGGGGGGTGTATTAATAGTAATAATAT
TGGTATTAATAGTACAGTAGCTCTTGTTCCAGGTAGTTTAGTATAAGCTG
CACTACAGTTTTATACCATACATATTAGTGTTGATTATACATTGTTGTTG
CACGCCCCTTGCAATCTCATCTATTAATGCTGCAGCAATAGCTTGCCTGT
GGAGAAACGAAGGCACCGTTATTTATAAATTTCTATCACAACAACTACAG
TGAAGTATCTGCGAATAGCCGTTCGCGCAGTAACCTACTTCAATGAAAAA
TACAAACTCACTGTTAGTACAACGGCCTTCGTTTCCCTCTTTGCTTCTTA
ATACTTGTACTATTGATGTTAATATTAATATGAATAGCACCTTTTAATAC
TTTATTTGTACTTCAATACTCGTATACGTATTTGGTCCAGGTCTTCTCGG
CATACGGAGAGATCTCTAAACTGCTGCTGCAAACCAACGAAGAGAGTGAG
TTATTTGAATAATAGACAGATTTATACACAACCTCTTATAGAAAGCAGCA
AAGCTCTCAAGCACTGATATTAATACCCGGTAGTTGTTTCGGTTCCAGGC
GTTCTTGATATATCAGTCATACACATTAGTTCCGAAGGAGGCCAGATGGC
CATGAGAGTGAGCACGCGCTTTGTTTCAGGTGATCAGTTGACCACTAACG
ATTATTTAATCTTGTTACGCAAATGGATGCTTTTCGACGTTGGCGCTGTT
TTCGTCCGCTGCCTTTTGTTTCGTTCCCAGCTAAGTCGCAGAGGGCTGTG
CTCGTGTTCGCTGAAGCGCAAGGGGCCCAGGCTGCTCTGCAGGTGCTGGC
ACAACTTTTCTCTCTATACTTGGAGGTTTTGTCCTCTCGACGTGAAGAGC
AGTAGCACATTGTGTAAAAGTCAGCACTTCTACCCCTCCCCAAACAAGGG
TTGAAGCTTTTTTTTCTCACAAGCCCTAACGCTTTCCGCCGATACGTTTT
TGGCGTAGATCAAGATAGTTCATACTTCGTAGCTCGAAGCGCCTCCGACA
GATCCGTATGTGACATAAAAATAAAGAGAGACGGTATCTCCATGATCATG
TACGCATCGTGAACATCCCGTTTACGGATGGCGCTTGTGTGTACTCAGGC
AAACGGGCGTGACATCCTGGGGTCTAACTGCTCCGTTGGGCTTGCGTCGT
CGATGCCGCCGTTGCACGAAGGCCTGGGGCGTGAAAATGTTAGCGACCAG
CCGGATGTAGGGGGTAAGTCTGGCGGTAACGACGGCGGAGTCTACACTCC
GGGGTTGGCGCAGCGCACAGGGTCCACAGGACGTTGTACGTGTATAAGAG
TAGAAAAGGTAGCTTCGACTTTGGCAACCATGGTACCCTTAGTCGAATGG
TGAGTTTATTACTCATGTATATGGCCTTGGGTACCGAAAAATTCAATCGC
ATCTCATTTTCATCACGTATCAGGCATCCAGTCCTAAAACCAGCTACGCC
GTGAACGGTACATCCCATCTTGCAGCGTGACCGACCTCTACCGCTCTTGC
TTTCGCGGTTGCCTGTTTCTTGTCGTGTCCTTTGTGTCTGTGTGTCTTAT
GTATCTGTGTGTCTGAAGCAGGTAACTCTGAAAATCGCAAAATGACTTAT
GCTGAATGGGTCGGGAGCTTCCTGGCTCAGGGCATGGTGTACACGCGCCT
CTTCGACGAGAAGCTTGGTGTATCGCAGACGGCCAAGGTTTTTGCGGGGA
AGGTGACCTCTGCTTAATCCGCTCTCTTGGCACCCCGTCTGTTTGACTTT
CCCGTGAATCCCCGTGGAGCTAGTTCTGCGTGCACGCTGCTGCAGGCATG
GCGATCGAGCTCGTAGGCGCCGTCGGACTTATCGCTTTCTCTGGTTTACA
CCGGGGCGATCATGGTGTGGGCATTTCTAAAGTAGGGATATTAGTTACCC
CCTGACGTGCCATCATACAGAAACCTAAAACGCCCACGCCCCTTTCATCT
CTTTGGGGTGCGCTTACATGCGGTCGAAACGTAAAACTGTGTTTTCAGGT
CCAGAAGTTCGACGAAACGCACAAAGTTAGCGGCACCGTAACTGCCGCCG
CCATGACGGCCGCCGAACAGGCTCGCATAGTTGACGCCAGGTAAAAGTCA
GTTGTTAGAGCTGTTCGTTTTTCACCACCGCCTCGTGAAACCTCATGAAA
CCTCATGAAACACCGCCTCCTGAAAGGCCTTTGTTATTAATAGTGTAAGC
GTAAGTGTACACTGGTGGTAACTGGGGTCGGATTGATAACTTGTTTGTTC
AACGCCTCACAAATTGGAGAAAATACGTACAAGCACGTGCCGAACCGATG
TTTGTATGGGTTTCCTATTAATAGTAGTTTGCCAGCGTTGACGCCGCGCT
GCGGCTTATAAAGTTGTATACTGAATTCCTACTCCTGTGCAAATGCTGGC
AAGTTGATAGCTCTAGATATCGATATCGAATTCCCGTCAAAAGTGTACTG
GTACAGAGCTATTTATAATAGTAGTCTTTGACGGCTTGACTTCAACGGCA
CAGGCTAAAGGTGTCGGAAACTGCGTTTAAGTGGGCGCAGAAGACCAAGG
AGTCCACAGGAAGGGTGAGTAAGAGGTATCAGGGCCAGGGTACCACAGAA
TTGTCTTTTCATCGTTGCGGGTTTCTTCACGGCAACATGTACCAATGCTT
AATGTTTCCAGTTAGATACCTGATATTGAAGTTGCGGACACGTACTACGT
AAAACTAATAATATTATAATAGTAAGGTCCTTCCCGCGATGATATTTTGC
CATTTCAAAGCTCGTGAATGCACATGTTCAAAGCACCCAAAACTTAGATT
TGATTAATCTCGTTGAGGCAGCGCCGACGCATCTGGCGAGCGCCTTCGCA
AATTGCCGCGTGGAATATGGTGGCACCCGCTAAGGGCGGAATACCTCTAT
TAATAGAGTAGCATTGCAATCCAGTCACTTTGCGTTTGTGACTAATGATT
GTGTTTGGTGTTTGTGGAGAGGTACGACTACGGTAGAGTCGAACATTGAA
CATTGTAACAAATTTAACATTTCCCAGCCATTTGTTTCGTGCTCTCTCTC
TACACTACTACAATACCACCCTGCCGTGGGCCGTAGGCGATAGAGAGCAA
TCCACGTGTTAAAGCCGGGGTGAAACAAGCAGGCGACGCCTTCACCAAGG
TCGTGACCGACGTCAGCGAATTCGCGCAGCTGTCCCTCCGGGGCCTGGAG
CCGCAGCAACAGCCGCAGCAGCAGGGGGAGGCGCAGGAGGGTTTCCAGCC
CGCCAATCCCACGAACGGAAGTTTCAAAATGGGACCCGGGAAATCCAACC
CCTAAACAACCCAAGCATCTTTCCTCGAGCGTCTATCTGAGATGGCAACG
TGGCCACTCCAATTTCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1197:200424..204441+

>mRNA_A-nodosum_M_contig1197.15.1 ID=mRNA_A-nodosum_M_contig1197.15.1|Name=mRNA_A-nodosum_M_contig1197.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=861bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:200424..204441+ (Ascophyllum nodosum dioecious)
ATGGTAGCAAGCACGGCAGACAAATTGTCGCACCCTGTGACGGAGAAGGA
GGCCATGCGCTCCATTCTGGTACAGGGACTGCCGCTGCTCGACCAGGAGC
TAACGGAGTCTTCAATCGTCCAGGTCTTCTCGGCATACGGAGAGATCTCT
AAACTGCTGCTGCAAACCAACGAAGAGACTAAGTCGCAGAGGGCTGTGCT
CGTGTTCGCTGAAGCGCAAGGGGCCCAGGCTGCTCTGCAGGCAAACGGGC
GTGACATCCTGGGGTCTAACTGCTCCGTTGGGCTTGCGTCGTCGATGCCG
CCGTTGCACGAAGGCCTGGGGCGTGAAAATGTTAGCGACCAGCCGGATGT
AGGGGCAGGTAACTCTGAAAATCGCAAAATGACTTATGCTGAATGGGTCG
GGAGCTTCCTGGCTCAGGGCATGGTGTACACGCGCCTCTTCGACGAGAAG
CTTGGTGTATCGCAGACGGCCAAGGTTTTTGCGGGGAAGGTCCAGAAGTT
CGACGAAACGCACAAAGTTAGCGGCACCGTAACTGCCGCCGCCATGACGG
CCGCCGAACAGGCTCGCATAGTTGACGCCAGGCTAAAGGTGTCGGAAACT
GCGTTTAAGTGGGCGCAGAAGACCAAGGAGTCCACAGGAAGGGCGATAGA
GAGCAATCCACGTGTTAAAGCCGGGGTGAAACAAGCAGGCGACGCCTTCA
CCAAGGTCGTGACCGACGTCAGCGAATTCGCGCAGCTGTCCCTCCGGGGC
CTGGAGCCGCAGCAACAGCCGCAGCAGCAGGGGGAGGCGCAGGAGGGTTT
CCAGCCCGCCAATCCCACGAACGGAAGTTTCAAAATGGGACCCGGGAAAT
CCAACCCCTAA
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